[chimerax-users] meshmol in chimeraX

Tom Goddard goddard at sonic.net
Tue Nov 23 21:42:32 PST 2021


Oops!  ChimeraX already had the equivalent of the meshmol command but with a different name "marker fromMesh"

	shape icosahedron radius 50  mesh true divisions 15 spherefactor 1
	marker fromMesh #1 edgeRadius 0.5 color pink

I have removed the meshmol command.  Please use marker fromMesh

	https://www.cgl.ucsf.edu/chimerax/docs/user/commands/marker.html

  Tom

> On Nov 22, 2021, at 3:30 PM, Tom Goddard via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Hi Vijay,
> 
>   I added the meshmol command to ChimeraX.   It will be in tomorrow's daily build, but not in the 1.3 release we expect to make in one week.  For example, to make a marker model with edge radius 1.5 from an icosahedron surface mesh
> 
> 	shape icosahedron radius 50  mesh true divisions 15 spherefactor 1
> 	meshmol #1 1.5
> 
> By the way, the hkcage command in ChimeraX automatically makes the marker models so you may want to use that instead.
> 
> 	https://www.cgl.ucsf.edu/chimerax/docs/user/commands/hkcage.html <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/hkcage.html>
> 
>   Tom
> 
> 
> 
>> On Nov 19, 2021, at 7:50 AM, Vijay Reddy via ChimeraX-users <chimerax-users at cgl.ucsf.edu <mailto:chimerax-users at cgl.ucsf.edu>> wrote:
>> 
>> Many thanks Tom,
>> I created an icosahedron using “shape icosahedron…” command. I would like to get the edges highlighted using the meshmol command that I used before in Chimera.
>> Please drop me an e-mail when it is available in ChimeraX.
>> Best regards,
>> Vijay
>>  
>> -- 
> 
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