[chimerax-users] Test files for bug report [ChimeraX] #5467: AmiraMesh

[Roden Deng Luo]

Hi Tom,

Many thanks. I am very new to both ChimeraX and Amira. As shown in the
screenshot on the right, it looks to me the data is a segmentation map. I
initiated the original post because I wanted to use the functionality "Fit
in map" in ChimeraX. Will there be a workaround that I can achieve this? As
a first step, I would like to fit only a very small fragment of the
segmentation map.

Best,
Roden


On Mon, Oct 25, 2021 at 10:29 PM Tom Goddard <goddard at sonic.net> wrote:

> Hi Roden,
>
> These 3 Amira files are vertex/edge/point data, not 3D lattices.  The
> ChimeraX reader only handles 3D lattices Amira files.  It does not look
> like our ChimeraX documentation explains this.  I'll try to get this on our
> docs (3d lattice volume data, float, unsigned 16-bit, uncompressed only).
>
>         Tom
>
>
> > On Oct 25, 2021, at 12:20 PM, Roden Deng Luo <deng.luo at kaust.edu.sa>
> wrote:
> >
> > Dear Tom and Andrea,
> >
> > Thanks for the quick responses. Upon the kind approval from Andrea, I
> attached the .am file I received from Andrea (in the format of 2.0), as
> well as the other two that are exported from this file (in the format of
> 3.0, one is in ascii as revealed by the name).
> >
> > Best regards,
> > Roden
>
>

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