[chimerax-users] Identifying residues based on PAE plot?

mailman-bounces at cgl.ucsf.edu mailman-bounces at cgl.ucsf.edu
Wed Apr 27 03:08:20 PDT 2022


From: "Jan Gebauer" <jan.gebauer at uni-koeln.de <mailto:jan.gebauer at uni-koeln.de>>
Subject: Identifying residues based on PAE plot?
Date: April 27, 2022 at 3:04:30 AM PDT
To: ChimeraX-users <chimerax-users-bounces at cgl.ucsf.edu <mailto:chimerax-users-bounces at cgl.ucsf.edu>>
Reply-To: "Jan Gebauer" <jan.gebauer at uni-koeln.de <mailto:jan.gebauer at uni-koeln.de>>


Hi everyone,

love the "new" work in the dailys for ChimeraX and visualising the PAE and pLDTT scores. As I calculate my AF structures on my own, this helps a lot to analyses the structures.

I have one question/suggestion however: If I select a region in the PAE plot, it gets coloured in the the "3D-view", however, I found no way to actually get the residues number or a proper selection for the coloured residues. Is there a way? I'd like to colour multiple selections differently...
Another nice feature would be a pLDTT plot, as this enables easier detection of unordered stretches...

As always: Many thanks for all the good work!

Best
Jan

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