[chimerax-users] Dali server alignment

[JAMES MICHAEL S1JJRUdFUiA=]

I know it’s not a chimerax answer but, we have functionality for doing  
this in ProDy if you want to try that.

Best wishes
James

Quoting HONG ZHAN via ChimeraX-users <chimerax-users at cgl.ucsf.edu>:

> Dear all,
>
> I am trying to align molecules based on Dali server output. However,  
> I can’t download the superposition results from the Dali server  
> webpage (or anyone know?), but I can generate an alignment file with  
> 2D structural alignment from the Dali server. Is there a way to use  
> matchmaker to superpose molecules based on output alignment from  
> Dali server? How to run structure conservation calculation to color  
> the molecule? If I just give Dali’s alignment file, it still  
> calculate conservation based on sequence not structure.
>
> Best,
> Hong
>
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