[chimerax-users] request for true transparency support in .bild files

Francois Berenger mlists at ligand.eu
Sun Aug 21 23:48:11 PDT 2022


Dear chimera hackers,

In the old Chimera (not X), if I put two transparent spheres in a .bild 
file:
one sphere can completely hide the other (e.g. a small one inside of a 
bigger one).

While, if there was true transparency, no sphere should completely hide 
another.

Is this better handled in ChimeraX?

I _love_ .bild files, because it is so easy to generate them in order to 
annotate
a 3D molecular system then view all of it (molecules + annotations) in 
Chimera.
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/bild.html

Thanks a lot,
F.

PS: here is an example problematic .bild file for the old chimera
---
.color green
.transparency 0.750000
.sphere -0.542700 0.122500 -0.047867 1.500000
.sphere 1.060560 -1.270600 -0.236620 1.500000
.color orange
.transparency 0.750000
.sphere 0.611100 -2.324200 -0.346200 1.250000
.sphere 1.108100 2.092000 0.140700 1.250000
.sphere -3.097400 0.651000 0.062700 1.250000
.color grey
.transparency 0.750000
.sphere -0.542700 0.122500 -0.047867 1.500000
.sphere 1.060560 -1.270600 -0.236620 1.500000
.sphere -1.453700 2.784800 0.269900 1.500000
.sphere 3.272900 0.026100 -0.134900 1.500000
.sphere -2.354000 -1.959600 -0.245900 1.500000
---


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