[chimerax-users] Segment Maps In ChimeraX

[Tom Goddard]

Hi Jonathan,

Sounds like there might be a bug here but you left out so many details there is no way to tell.  How are you segmenting the density?  You would have to explain all the steps.

	Tom


> On Aug 18, 2022, at 2:18 PM, Myers, Jonathan via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear ChimeraX User Group,
> 
> I'm trying to segment a map using an atomic model as a reference. To make my life easier for many of the operations I use in my work, I centered all of my structures to the origin of the session. However, when I want to segment out parts of my density, the original coordinates of the map are used for the various regions. I, therefore, can't use my centered structures as a reference as I had originally planned. I don't know if this is a bug or if this is intentionally programmed, but I am having a difficult time re-aligning the segmentation to my origin-based coordinate system.
> 
> Is there a better way to do what I am trying to do or am I out of luck? Thank you.
> 
> Shosholoza,
> 
> Jonathan Myers
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