[chimerax-users] Questions on job status

[Will Grubbe]

Thank you for the response Elaine. It was a Modeller online job to fill in
some missing residues of a protein complex. I kept ChimeraX open the whole
time on my computer but can't find anything updated, either on the desktop,
in the downloads, or in the results folder I specified. I don't see
anything in the log list either - perhaps I am doing something wrong. I do
have job IDs if that helps -
Webservices job id: EZ1QP7XJZLIY0BVI
Webservices job id: 488559BRXJ20I5U4
Webservices job id: L4AM4PK7N293HQ1L

On Thu, Aug 25, 2022 at 6:59 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> HI WIll,
> It would help if you would say what kind of job you submitted.  Modeller?
> AlphaFold prediction? In either case you would normally keep the same
> ChimeraX session open and results would automatically open in ChimeraX when
> they return. If you quit out of ChimeraX while Modeller is still running,
> currently you can't get the results later.  If it seems to take a really
> long time, maybe it just failed and you should look in the Log to see if
> there was a message.
>
> AlphaFold prediction is different since it doesn't run on our website but
> instead on Google Colab.  If there were any results returned before you
> quit from ChimeraX, they should be in folders under
> ~/Downloads/ChimeraX/AlphaFold/ on your machine.  Maybe the Colab timed out
> before returning any results, however.  Even if you were trying to fill in
> just a few residues, if you were predicting the whole complex it is
> potentially a very long job.
>
> For Alphafold predict, make sure you are using a recent ChimeraX daily
> build -- in mid-July we improved it to use ColabFold which is a much faster
> version.  Also in the last day or two, a new option to specify the results
> folder location was added.
> <https://rbvi.ucsf.edu/chimerax/docs/user/tools/alphafold.html#predict>
> <https://www.rbvi.ucsf.edu/trac/ChimeraX/wiki/ChangeLog>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Aug 25, 2022, at 3:29 PM, Will Grubbe via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > Hello, I've submitted a few jobs using ChimeraX and am wondering how to
> check the status of them. I just need to fill in a few residues in a
> protein complex with known sequence - where can I find the results when
> they are done?
> > Thank you for your help,
> > Will
>
>
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