[chimerax-users] Color atoms by kdHydrophobicity

Daniel Gurnon danielgurnon at depauw.edu
Mon Aug 29 09:20:23 PDT 2022


Hi all,
I use Chimera mostly for teaching purposes, and while Chimera X is
definitely more user friendly for students, there are occasionally things I
like from the legacy version that I can't find on a menu in the new
program. One such feature is "Render by attribute". While the mlp command
can create a lipophilicity surface, when I teach protein folding I like to
have students visualize all atoms, with residues colored by
kdHydrophobicity. Is there a simple way to implement this?

Thanks
Dan
____________________________

Daniel Gurnon, Ph. D.
Associate Professor of Chemistry and Biochemistry
DePauw University
Greencastle, IN 46135
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