[chimerax-users] bonding Question

[Noriega, Heather]

Hello,

I hope you are well. I have a quick question about the bond command. I
attached the pdb file I have been using to try and learn this command. I am
having a hard time figuring out how I should write it on the command line.
If I want to create a bond between residue Lys76 from the antibody and the
Oxygen #2 from my polymer, how would I write it on the command line?

bond :lys76:O2

I have read the section in the manual but I think I am misunderstanding
something, it keeps giving me a mangled atom specifier.

Also, I figured out the problem from my last question/email about the
volume in my viral capsid. :) Thank you for your help on that one Elaine.


Thank you,

Heather Noriega
PhD-Pharmaceutical Science student
Howard University
heather.noriega at bison.howard.edu
520-203-1883
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