[chimerax-users] Bundle dependency

Anthony James Schaefer tony.schaefer at uga.edu
Mon Feb 21 09:57:15 PST 2022


Katie,

It looks like PDB objects on PyPI is called pdb-objects, not pdb_objects. For dependencies, ChimeraX looks for the package name and not the import name.

Best,

Tony
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From: ChimeraX-users <chimerax-users-bounces at cgl.ucsf.edu> on behalf of Zeng, Katie via ChimeraX-users <chimerax-users at cgl.ucsf.edu>
Sent: Monday, February 21, 2022 11:50 AM
To: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
Subject: [chimerax-users] Bundle dependency

[EXTERNAL SENDER - PROCEED CAUTIOUSLY]

Hi,

I'm currently working on building a membrane builder bundle and it requires the use of a python library called 'pdb_objects'.

Following the tutorial on the website, I'm adding the following line to my bundle_info.xml file under the dependencies tag:

<Dependency name="pdb_objects"/>

It still gives me an error of <No module named 'pdb_objects'> when I load my bundle in ChimeraX. How can I allow the use of this library in my bundle?

Thanks for your help!

Best Regards,
Katie
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