[chimerax-users] correct format for attribute information file (.defattr)

Rangarajan, Amith Amith.Rangarajan at ucsf.edu
Thu Feb 24 09:51:44 PST 2022


Dear All,

I am sorry , i hit send before completely explain the issue. I think it is a formatting issue on the defattr input file, which i am not able to identify.

I have attached the input file as attachment.

Kindly review and suggest what could be done to fix the same.

thanks again for your support.,

best
amith
________________________________
From: ChimeraX-users <chimerax-users-bounces at cgl.ucsf.edu> on behalf of Rangarajan, Amith via ChimeraX-users <chimerax-users at cgl.ucsf.edu>
Sent: Thursday, February 24, 2022 9:47 AM
To: ChimeraX Users Help <ChimeraX-users at cgl.ucsf.edu>
Subject: Re: [chimerax-users] correct format for attribute information file (.defattr)

Hello everyone, I am trying to add mutation counts as a attribute and use it to generate a map of hotspots on the protein . I followed the format provided on chimerax documentation and i am getting this error : ‍ ‍ ‍ ‍ ‍ ZjQcmQRYFpfptBannerStart
This Message Is From an External Sender
This message came from outside your organization.
ZjQcmQRYFpfptBannerEnd
Hello everyone, I am trying to add mutation counts as a attribute and use it to generate a map of hotspots on the protein . I followed the format provided on chimerax documentation and i am getting this error : ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ZjQcmQRYFpfptBannerStart
This Message Is From an External Sender
This message came from outside your organization.
ZjQcmQRYFpfptBannerEnd
Hello everyone,

I am trying to add mutation counts as a attribute and use it to generate a map of hotspots on the protein .

I followed the format provided on chimerax documentation and i am getting this error :


SyntaxError: Line 12 in KIT-mutations-count.defattr is either not of the form 'name: value' or is missing initial tab

File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\std_commands\defattr.py", line 107, in defattr
raise SyntaxError("Line %d in %s is either not of the form 'name: value'"

i am on windows 11 using chimerax 1.3.

thanks
amith
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.rbvi.ucsf.edu/pipermail/chimerax-users/attachments/20220224/99dff438/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: KIT-mutations-count.defattr
Type: application/octet-stream
Size: 490 bytes
Desc: KIT-mutations-count.defattr
URL: <http://www.rbvi.ucsf.edu/pipermail/chimerax-users/attachments/20220224/99dff438/attachment.obj>


More information about the ChimeraX-users mailing list