[chimerax-users] Model panel for multi-state objects of dimeric protein

Elaine Meng meng at cgl.ucsf.edu
Fri Jul 22 09:08:41 PDT 2022


Hello,
That makes no sense to me.  As far as I can tell, your command should work equally well regardless of which chain IDs are present.  If it really doesn't work, I don't know what other command would work without having an example of the dimer situation to try myself. 
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Jul 22, 2022, at 3:03 AM, Enrico Martinez via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear ChimeraX users!
> 
> I am working on the visualization of protein-ligand interactions
> obtained from docking.
> 
> In the ChimeraX session I have a loaded session with 88 docking poses
> (consisting of each frame receptor and ligand) corresponded to the
> separate objects (1.1 .. to 1.88)
> From this ensemble I need to keep only the X object from these
> multiple states. I have tried to use the following command:
> close #1 & ~ #1.x
> 
> which works perfectly for the monomeric protein. But when I am dealing
> with the analysis of the dimer (with A and B chains) it does not work.
> Only close #1 still can be used to close ALL objects.
> 
> Which command could be used to keep the selected state from the
> ensemble for both monomer and dimer in the same way?
> Many thanks in advance
> Cheers
> Enrico




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