[chimerax-users] quality of life imporovement suggestion for view matrix output

Tom Goddard goddard at sonic.net
Wed Jun 22 11:37:51 PDT 2022


Hi Pranav,

  Ok, the view matrix command will produce the more useful output in tomorrow's daily builds.  Thanks for the suggestion.

	Tom


> On Jun 22, 2022, at 10:28 AM, Pranav Shah via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Thats correct Tom!
> The second option would be a dream!
> Best,
> Pranav
> --
> Pranav Shah
> Postdoctoral Research Fellow.
> 
> Division of Structural Biology,
> Wellcome Trust Centre for Human Genetics,
> University of Oxford,
> Roosevelt Drive, Oxford OX3 7BN,
> UK
> 
> On Wed, Jun 22, 2022 at 6:25 PM Tom Goddard <goddard at sonic.net> wrote:
>> 
>> Hi Pranav,
>> 
>>  The view matrix command output looks like this
>> 
>>> view matrix
>> camera position: 1,0,0,-1.5597,0,1,0,-9.1553e-05,0,0,1,324.03
>> model positions: #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,0.90168,-0.43227,-0.010709,39.384,0.4324,0.90129,0.026728,18.933,-0.0019015,-0.028731,0.99959,-0.075059,#2.1,1,0,0,0,0,1,0,0,0,0,1,0
>> 
>> Then to position the models (and not the camera) you would use command
>> 
>> view matrix models #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,0.90168,-0.43227,-0.010709,39.384,0.4324,0.90129,0.026728,18.933,-0.0019015,-0.028731,0.99959,-0.075059,#2.1,1,0,0,0,0,1,0,0,0,0,1,0
>> 
>> Do you mean you want the view matrix command to output that command, so a single copy and paste lets you put it in a script?  I guess I could change the view matrix output so it looks like
>> 
>>> view matrix
>> view matrix camera 1,0,0,-1.5597,0,1,0,-9.1553e-05,0,0,1,324.03
>> view matrix models #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,0.90168,-0.43227,-0.010709,39.384,0.4324,0.90129,0.026728,18.933,-0.0019015,-0.028731,0.99959,-0.075059,#2.1,1,0,0,0,0,1,0,0,0,0,1,0
>> 
>> Is that what you are suggesting?
>> 
>>        Tom
>> 
>>> On Jun 22, 2022, at 9:18 AM, Pranav Shah via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
>>> 
>>> Hi Team,
>>> 
>>> I use the view matrix command regularly to save orientation of the
>>> maps/models in a command file. As it currently stands, the output
>>> needs to be formatted appropriately so that the command can be run. As
>>> a one off, it is trivial to format the output from the log window into
>>> an appropriate format but, when it has to be done repeatedly as is my
>>> case it becomes quite annoying. Therefore, I was wondering if you
>>> would agree to format the output so that it can be directly copy
>>> pasted in a ready to use format?
>>> 
>>> Best,
>>> Pranav
>>> --
>>> Pranav Shah
>>> Postdoctoral Research Fellow.
>>> 
>>> Division of Structural Biology,
>>> Wellcome Trust Centre for Human Genetics,
>>> University of Oxford,
>>> Roosevelt Drive, Oxford OX3 7BN,
>>> UK
>>> _______________________________________________
>>> ChimeraX-users mailing list
>>> ChimeraX-users at cgl.ucsf.edu
>>> Manage subscription:
>>> https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
>>> 
>> 
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