[chimerax-users] where can I find the mesh option in chimeraX?

Elaine Meng meng at cgl.ucsf.edu
Thu Jun 23 09:14:36 PDT 2022


Sorry, my mail display did not make it clear that those files you attached were images.  

These volume display options are not in a GUI currently, but they are all in the "volume" command, e.g. see

<https://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#dispsurf>

I hope this helps,
Elaine

> On Jun 23, 2022, at 9:10 AM, 王超 via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear Dr.Elaine
>       Thanks for reply!
>       But that is actrually not my point. I mean where to find the options like subdivide surface/surface smoothing iterations factor...(fig in the chimera)
>  <2FFE1C7A at 3E6FA006.6690B462>
> ------------------ Original ------------------
> From:  "Elaine Meng"<meng at cgl.ucsf.edu>;
> Date:  Fri, Jun 24, 2022 00:02 AM
> To:  "王超"<wangc at henu.edu.cn>; 
> Cc:  "chimerax-users"<chimerax-users at cgl.ucsf.edu>; 
> Subject:  Re: [chimerax-users] where can I find the mesh option in chimeraX?
>  
> Hello,
> When you are showing volume data there is automatically a Volume Viewer panel included in the window.  Near the right end of it above the histogram is a menu, probably says "surface" if the map is currently shown as a surface -- click on that to show menu and choose "mesh" instead.
> 
> <E7CA1B6C at F6E5EE7A.6690B462.png>
> 
> See ChimeraX Volume Viewer help
> <https://rbvi.ucsf.edu/chimerax/docs/user/tools/volumeviewer.html>
> 
> Or you can use a command, e.g.
> 
> volume all style mesh
> 
> There are lots of options in the "volume" command
> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#general>
> 
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
> 
>> On Jun 22, 2022, at 7:29 PM, 王超 via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
>> 
>> Dear All,
>> I want to setting the mesh option in ChimeraX like "Chimera way".
>> Like "open Volume Viewer of a map, and click features-data display option".
>> but I cannot find toolbar of Volume Viewer, I am puzzle where to find it?<2BF92685 at ECAE6D2D.01D0B362>
>> <2EFD1F7D at 22C8076A.01D0B362>
> 
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