[chimerax-users] Error when joining two pdbs
Praveen Ranganath Prabhakar
prprabha at uci.edu
Wed Jun 29 09:23:33 PDT 2022
Hi all,
I am Praveen, a graduate student at UC Irvine. Hope you are doing well. I
am using Chimera X. In my project, I have to join a protein to a peptide
sequence via a peptide bond. I have loaded the PDB files of both the
protein and the peptide sequence & I have identified where (between which
atoms) the peptide bond has to be. After loading the PDBs, I use the
following in the command line "*select #1:12.A at C#2:1.A at N*" (basically
identifying the residue/atoms where the peptide bond has to be formed) to
join but I get the error "*Expected an objects specifier or a keyword*" . I
am sorry if this is a common error and I have missed something, I am new to
Chimera. Also it would be great if someone could tell me if there is a way
to save the final pdb after joining them?
Thank you so much for your time,
Best,
Praveen
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.rbvi.ucsf.edu/pipermail/chimerax-users/attachments/20220629/9b89d654/attachment.html>
More information about the ChimeraX-users
mailing list