[chimerax-users] exporting crosslinks histogram

Tom Goddard goddard at sonic.net
Tue May 17 20:59:11 PDT 2022


Hi Pim,

  I added a Save Plot As... menu entry to the crosslinks histogram, can save as svg or pdf or png.  I also added bins, maxLength, minLength and height options to the command to control how many bins, the x scale and height of y scale (in counts per bin).  These changes will be in tomorrow's ChimeraX daily build which will become ChimeraX 1.5 eventually.  Too late to make it into ChimeraX 1.4.

	Tom

> Dear ChimeraX team,
> 
> I am analysing multiple datasets generated using crosslinking-ms, loaded as separate pseudobond files on my model. The crosslinks histogram plots works just fine and I’d now like to put some plots neatly side-by-side. My questions:
> 
> - can the histogram be saved or exported? Ideally as an svg or pdf file. But png or jpg would also already be useful. 
> I could export the .pb files and plot them elsewhere, but that seems like a workaround.
> 
> - is it possible to specify the x and the y axis of the generated histograms, as well as the bin size? This would be helpful to show them side-by-side.
> 
> Many thanks in advance,
> 
> Pim
> -running v1.2.5 on mac os catalina 10.15-

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