[chimerax-users] Map "Blobs" tool - Generate objects?

[Alexis Rohou]

Great!! Thanks Ricardo!

On Fri, May 20, 2022 at 7:46 AM Ricardo Righetto <ricardorighetto at gmail.com>
wrote:

> Hi again,
>
> Pardon for resurrecting another old thread:
> https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2020-May/001139.html
>
> I have needed to extract selected blobs as separate surfaces (and also
> separate volumes) recently and found a way to do it within ChimeraX version
> 1.3 (2021-12-08), here's how:
>
> 1. Right mouse → Blob → right click desired blob to color it (any color
> different from the rest of the volume)
>
> 2. Split the surface based on colors:
> sop splitbycolor #1.2
>
> 3. Use the desired split surface to mask the original volume data:
> vol mask #1 surf #2.2 fullMap true
>
> 4. Save as a new volume:
> save my_segmented_piece.mrc #3
>
> Hope this helps :-)
>
> Best wishes,
>
> --
> Ricardo Diogo Righetto
>
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