[chimerax-users] How to discover hydrophobic between two chains

[McClean, Phillip]

Hi Everyone,

I ran AF2 multimer and have a two-chain complex.  I ran the mlp command on the two chains separately and together.  The two chains seem to interact via hydrophobic residues where chain B fits into a pocket on chain C.  Here are the chain residues:

/b:72-124
/c:1-190

Is there any way to determine which residues (hydrophobic) in each of these two regions are interacting via hydrophobic interactions.

Thanks for any help you can provide.

Phil McClean
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