[chimerax-users] Visualization of the carbon - Cl bond in a small molecule

[Enrico Martinez]

Dear ChimeraX users!
I have an issue with the visualization of the small molecule obtained
from the tleap module of the amber tools. First of all in vmd and
pymol everything looks OK. In the ChimeraX there is no bond between
atom CL of the ligand and the aromatic C atom. I've tried to change
atom type for the CL:
setattr :lig at CL1 atoms idatm_type CL
show :lig@*

but the bond is still absent. Would it be possible to rebuild it manually?
Cheers,
Enrico