[chimerax-users] How to update the bonding status in a molecular trajectory?

[Eric Pettersen]

Hi Ran,
	There is no need to send the same question to the mailing list three times within minutes of one another.
	It looks like the bonds are between the wrong pairs of atoms.  Assuming your trajectory is model #1, these commands should fix it: "~bond; bond #1".

--Eric

	Eric Pettersen
	UCSF Computer Graphics Lab


> On Sep 8, 2022, at 6:03 PM, 洪冉 via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear ChimeraX developers and users,
> I tried to use ChimeraX to visualize my MD trajectory and I found some bonds were stretched very long and weird, see below
> In VMD, I could fix this phenomenon using updatebond features, could anybody tell me how to enable this feature in ChimeraX? Many thanks in advance.
> <image.png>
> 
> 
> Ran hong
> hongran at ahpu.edu.cn <mailto:hongran at ahpu.edu.cn>
> Anhui polytechnic university
> Wuhu, China, 241000
> 
> 
> 
> 
> 
> 
> 
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