[chimerax-users] Failure in installing daily build version

Greg Couch gregc at cgl.ucsf.edu
Sat Sep 10 00:11:41 PDT 2022


That will be fixed in the next daily build.   Since the error occurred 
in the in post-installation script, /usr/bin/chimerax-daily was 
successfully installed and is functional.  What's broken is the 
integration with the system menus.

     -- Greg

On 9/9/2022 10:13 PM, jq via ChimeraX-users wrote:
>
> Dear ChimeraX users,
>
> I am trying to install the daily build version on Ubuntu22.04.
>
> After getting the .deb file,
>
> I executed sudo apt-get install 
> /home/fbsb2/apps/ChimeraX/chimerax-daily.deb
>
> Here is the output:
>
> Reading package lists... Done
>
> Building dependency tree.. Done
>
> Reading state information... Done
>
> Note, selecting 'ucsf-chimerax-daily' instead of
>
> '/home/fbsb2/apps/ChimeraX/chimerax-daily.deb'
>
> ucsf-chimerax-daily is already the newest version (2022.09.08ubuntu22.04).
>
> The following packages were automatically installed and are no longer 
> required:
>
> gfortran-11 libfreerdp-server2-2 libgfortran-11-dev libgnome-bg-4-1
>
> libntfs-3g89 libvncserver1
>
> Use 'sudo apt autoremove' to remove them.
>
> 0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
>
> 1 not fully installed or removed.
>
> After this operation, 0 B of additional disk space will be used.
>
> Do you want to continue? [Y/n] y
>
> Setting up ucsf-chimerax-daily (2022.09.08ubuntu22.04) ...
>
> Install desktop menu and associated mime types
>
> Traceback (most recent call last):
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/__main__.py",
>
> line 724, in init
>
> run(sess, cmd)
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/commands/run.py",
>
> line 38, in run
>
> results = command.run(text, log=log, return_json=return_json)
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/commands/cli.py",
>
> line 2897, in run
>
> result = ci.function(session, **kw_args)
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/linux/cmd.py",
>
> line 23, in linux_xdg_install
>
> install(session, verbose=verbose, system=system)
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/linux/_xdg.py",
>
> line 428, in install
>
> generate(session, info, system, verbose)
>
> File 
> "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/linux/_xdg.py",
>
> line 421, in generate
>
> from chimerax.core import localized_app_name
>
> ImportError: cannot import name 'localized_app_name' from
>
> 'chimerax.core'
>
> (/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/__init__.py)
>
> dpkg: error processing package ucsf-chimerax-daily (--configure):
>
> installed ucsf-chimerax-daily package post-installation script
>
> subprocess returned error exit status 70
>
> Errors were encountered while processing:
>
> ucsf-chimerax-daily
>
> E: Sub-process /usr/bin/dpkg returned an error code (1)
>
> I have installed 1.4 version before.
>
> I wonder what might the reason and how to fix it.
>
> Thank you in advance.
>
>
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