[chimerax-users] calculate volume of voxels

Elaine Meng meng at cgl.ucsf.edu
Wed Sep 21 13:10:53 PDT 2022


If you mean to just find out the voxel size, you can use command "volume settings" or menu: Tools... Volume Data... Map Coordinates.
<https://rbvi.ucsf.edu/chimerax/docs/user/tools/mapcoords.html>

If you mean to measure the volume inside the surface (cubic angstroms) then command "measure volume" or menu: Tools... Volume Data... Measure Volume and Area.
<https://rbvi.ucsf.edu/chimerax/docs/user/tools/measurevolume.html>
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#volume>

See also the general page on measurements:
<https://rbvi.ucsf.edu/chimerax/docs/user/measurements.html>

Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 21, 2022, at 12:18 PM, Tianming Qu via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Thanks for the so quick reply Dr. Elaine.
>  
> One more question, can chimera calculate the volume of voxels for density map?
>  
> Best,
> Tianming




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