[chimerax-users] Fixing the PDB

[Elaine Meng]

Hi Dmitry,
We don't use Pymol so we don't know why it looks like that, sorry.  If the file opens fine in ChimeraX it is probably not corrupted, but Pymol does not like something about how the residues are named.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 23, 2022, at 4:55 AM, Dmitry Semchonok via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear colleagues,
> I tried renaming the residues. When I did so in chimeraX the file opens just fine but in pymol - it looks as a green hedgehog.
> 
> I suppose that the pdb file is corrupted somehow.
> 
> Is there a way to fix it?
> 
> Kind regards,
> Dmitry