[chimerax-users] Coloring according to the secondary structure

[Enrico Martinez]

Thank you very much Elaine! 😘
Cheers
Enrico


Il giorno ven 6 gen 2023 alle ore 17:19 Elaine Meng <meng at cgl.ucsf.edu> ha
scritto:

> Hello,
> It is very easy, just use the color names you want in commands something
> like the following:
>
> color coil gray
> color helix orange red
> color strand purple
>
> ... the above would color all the representations (cartoon, atoms,
> molecular surface...).  If you specifically want to color cartoon only (not
> atoms, molecular surface...), could be something like:
>
> color coil gray target c
> color helix orange red target c
> color strand purple target c
>
> explanation of command-line specifiers like helix, strand, coil...
> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#builtin>
>
> list of color names
> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/colornames.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jan 6, 2023, at 8:11 AM, Enrico Martinez via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > Dear ChimeraX users!
> > I need to color cartoon representation of a protein according to its
> > secondary structure (e.g. to color helix in red, b-stands in blue and
> > coils in violet etc). I have already seen a built-in plugin in UCSF
> > Chimera (but not in Chimera-X) that could do this job! Could you
> > suggest commands that would be useful in Chimera-X?
> > Many thanks in advance
> > Cheers
> > Enrico
>
>
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