[chimerax-users] Reasign secondary structure for back-bone trace

[Enrico Martinez]

I gotcha, indeed It corresponds to the main-chain atom subset. With it
everything is OK!
Cheers
Enrico

Il giorno gio 19 gen 2023 alle ore 01:11 Eric Pettersen <pett at cgl.ucsf.edu>
ha scritto:

> I'm talking about the oxygen connected to the non-α–carbon backbone carbon
> of every amino acid.  If it is missing, dssp will not compute secondary
> structure.
>
> --Eric
>
> On Jan 18, 2023, at 1:10 AM, Enrico Martinez <jmsstarlight at gmail.com>
> wrote:
>
> Hey Eric,
> actually I am using a backbone subset defined by Gromacs during the
> computing. Are you talking about backbone or main-chain sub-space?
> I am using the latest version of ChimeraX but also I do have a ChimeraX
> daily installed on the same machine..
> Cheers,
> Enrico
>
> Il giorno mar 17 gen 2023 alle ore 19:19 Eric Pettersen <pett at cgl.ucsf.edu>
> ha scritto:
>
>> Hi Enrico,
>>         Do you have all the backbone atoms, including the backbone
>> oxygen?  What version of ChimeraX are you using?
>>
>> --Eric
>>
>>         Eric Pettersen
>>         UCSF Computer Graphics Lab
>>
>>
>> > On Jan 17, 2023, at 7:26 AM, Enrico Martinez via ChimeraX-users <
>> chimerax-users at cgl.ucsf.edu> wrote:
>> >
>> > Dear Chimera-X users!
>> > I am working on the visualization of a trajectory containing only
>> back-bone atoms of the protein obtained from the PCA. When I load this
>> multi-pdb ensemble to Chimera-X I can see only back-bone traces without any
>> secondary structure information. I've tried to use dssp command to
>> re-assign the secondary structure but it did not change the visualization
>> state. Would it be possible to do it in some automatic fashion via some
>> built-in command?
>> > Many thanks in advance
>> > Cheers
>> > Enrico
>> > _______________________________________________
>> > ChimeraX-users mailing list
>> > ChimeraX-users at cgl.ucsf.edu
>> > Manage subscription:
>> > https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.rbvi.ucsf.edu/pipermail/chimerax-users/attachments/20230119/4e75013d/attachment.html>