[chimerax-users] Importing pdb structures from OPM

[Prathvi Singh]

Thank you very much.

On Wed, Mar 15, 2023 at 9:47 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Prathvi,
> There is no OPM fetch -- instead you go to the OPM database website and
> download the file(s) that you want onto your computer.  Then you use "open"
> to open a local PDB file.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Mar 15, 2023, at 12:33 AM, Prathvi Singh via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > Hi Elaine,
> > I was wondering where it is possible to use the "open" command to import
> PDB structures of membrane proteins from OPM. I see in:
> https://www.cgl.ucsf.edu/chimerax/docs/user/commands/open.html#fetch that
> we can fetch data from various sources but OPM was not listed there. If
> this were possible, we could directly import membrane protein structures
> from OPM which have dummy residues that can be used to define membrane
> boundaries via the define plane command.
> > Thank you
> > --
> > Prathvi Singh,
> > Research Fellow,
> > Department of Biological Sciences & Bioengineering,
> > Indian Institute of Technology, Kanpur-208016
>
>

-- 
Prathvi Singh,
Research Fellow,
Department of Biological Sciences & Bioengineering,
Indian Institute of Technology, Kanpur-208016
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