| 1 | REMARK --------------------- added by autoBUSTER -------------------------------
|
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| 2 | REMARK run at = Wed Aug 29 15:29:15 CEST 2018
|
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| 3 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
|
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| 4 | REMARK user = vincent
|
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| 5 | REMARK cmd = \
|
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| 6 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20180515/autoBUS
|
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| 7 | REMARK -p Refine26/refine26-coot-39-isolde6-noH.pdb -m \
|
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| 8 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS \
|
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| 9 | REMARK tls-TMD-NBD.dat -nthreads 16 -R 30 3.95 \
|
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| 10 | REMARK StopOnGellySanityCheckError=no -d Refine31 -nbig 20 -nsmall \
|
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| 11 | REMARK 500
|
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| 12 | REMARK Files used:
|
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| 13 | REMARK PDB = Refine31/pdbchk.pdb
|
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| 14 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
|
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| 15 | REMARK output written to subdirectory = Refine31
|
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| 16 | REMARK best refinement for F,SIGF with R/Rfree 0.2640/0.2985
|
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| 17 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
|
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| 18 | REMARK --------------------- added by autoBUSTER -------------------------------
|
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| 19 | REMARK --------------------- added by autoBUSTER -------------------------------
|
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| 20 | REMARK run at = Fri Jun 15 13:47:22 CEST 2018
|
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| 21 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
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| 22 | REMARK user = vincent
|
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| 23 | REMARK cmd = \
|
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| 24 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20180515/autoBUS
|
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| 25 | REMARK -p Refine23/ISOLDE-03-13-coot-3_modified2.pdb -m \
|
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| 26 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS \
|
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| 27 | REMARK tls-TMD-NBD.dat -nthreads 16 -R 30 3.95 \
|
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| 28 | REMARK StopOnGellySanityCheckError=no -d Refine26 -nbig 20 -nsmall \
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| 29 | REMARK 500
|
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| 30 | REMARK Files used:
|
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| 31 | REMARK PDB = Refine26/pdbchk.pdb
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| 32 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
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| 33 | REMARK output written to subdirectory = Refine26
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| 34 | REMARK best refinement for F,SIGF with R/Rfree 0.2737/0.3059
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| 35 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 36 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 37 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 38 | REMARK run at = Wed May 2 16:06:29 CEST 2018
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| 39 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
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| 40 | REMARK user = vincent
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| 41 | REMARK cmd = \
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| 42 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20170920/autoBUS
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| 43 | REMARK -p Refine20/refine20-coot-4.pdb -m \
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| 44 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS -nthreads \
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| 45 | REMARK 16 -R 30 3.95 StopOnGellySanityCheckError=no -d Refine21 \
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| 46 | REMARK -nbig 20 -nsmall 500
|
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| 47 | REMARK Files used:
|
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| 48 | REMARK PDB = Refine21/pdbchk.pdb
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| 49 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
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| 50 | REMARK output written to subdirectory = Refine21
|
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| 51 | REMARK best refinement for F,SIGF with R/Rfree 0.3029/0.3303
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| 52 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 53 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 54 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 55 | REMARK run at = Mon Apr 30 12:00:55 CEST 2018
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| 56 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
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| 57 | REMARK user = vincent
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| 58 | REMARK cmd = \
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| 59 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20170920/autoBUS
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| 60 | REMARK -p Refine19/refine19-coot-6.pdb -m \
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| 61 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS -nthreads \
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| 62 | REMARK 16 -R 30 3.95 StopOnGellySanityCheckError=no -d Refine20 \
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| 63 | REMARK -nbig 10 -nsmall 500
|
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| 64 | REMARK Files used:
|
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| 65 | REMARK PDB = Refine20/pdbchk.pdb
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| 66 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
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| 67 | REMARK output written to subdirectory = Refine20
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| 68 | REMARK best refinement for F,SIGF with R/Rfree 0.3303/0.3386
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| 69 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 70 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 71 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 72 | REMARK run at = Thu Apr 26 10:57:34 CEST 2018
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| 73 | REMARK in = /xray/veronica/Y-SOLEIL-20180208/BUSTER
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| 74 | REMARK user = veronica
|
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| 75 | REMARK cmd = \
|
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| 76 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20170920/autoBUS
|
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| 77 | REMARK -p Refine12/refine12-coot-18.pdb -m \
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| 78 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS -nthreads \
|
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| 79 | REMARK 16 -R 30 3.95 XrayWeight_max=6 StopOnGellySanityCheckError=no
|
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| 80 | REMARK -d Refine19 -nbig 1 -nsmall 500
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| 81 | REMARK Files used:
|
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| 82 | REMARK PDB = Refine19/pdbchk.pdb
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| 83 | REMARK MTZ = /xray/veronica/Y-SOLEIL-20180208/BUSTER/staraniso_al
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| 84 | REMARK output written to subdirectory = Refine19
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| 85 | REMARK best refinement for F,SIGF with R/Rfree 0.3479/0.3557
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| 86 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 87 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 88 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 89 | REMARK run at = Tue Apr 17 11:05:02 CEST 2018
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| 90 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
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| 91 | REMARK user = vincent
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| 92 | REMARK cmd = \
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| 93 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20170920/autoBUS
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| 94 | REMARK -p Refine8/refine8-work-polyALA-coot-17.pdb -m \
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| 95 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS -nthreads \
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| 96 | REMARK 16 -R 30 3.95 StopOnGellySanityCheckError=no -d Refine12 \
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| 97 | REMARK -nbig 10
|
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| 98 | REMARK Files used:
|
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| 99 | REMARK PDB = Refine12/pdbchk.pdb
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| 100 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
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| 101 | REMARK output written to subdirectory = Refine12
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| 102 | REMARK best refinement for F,SIGF with R/Rfree 0.3516/0.3563
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| 103 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 104 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 105 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 106 | REMARK run at = Wed Mar 28 09:58:50 CEST 2018
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| 107 | REMARK in = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER
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| 108 | REMARK user = vincent
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| 109 | REMARK cmd = \
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| 110 | REMARK /xray/softxtal/LINUX64/BUSTER/BUSTER_snapshot_20170920/autoBUS
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| 111 | REMARK -p ../phaser_6/Y-SOLEIL-xxl_phaser.1.pdb -m \
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| 112 | REMARK staraniso_alldata-Rfree.mtz -autoncs_noprune -TLS -nthreads 8
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| 113 | REMARK -R 20 3.95 -d Refine8
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| 114 | REMARK Files used:
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| 115 | REMARK PDB = Refine8/pdbchk.pdb
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| 116 | REMARK MTZ = /xray/vincent/Y-SOLEIL-PX1-20180208/BUSTER/staraniso
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| 117 | REMARK output written to subdirectory = Refine8
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| 118 | REMARK best refinement for F,SIGF with R/Rfree 0.3892/0.3949
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| 119 | REMARK header records are copied from input PDB file (apart from REMARK 3!)
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| 120 | REMARK --------------------- added by autoBUSTER -------------------------------
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| 121 | REMARK TITLE [no title set]
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| 122 | REMARK Log-Likelihood Gain: 626.798
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| 123 | REMARK RFZ=6.8 TFZ=7.5 PAK=0 LLG=139 TFZ==10.5 RF++ TFZ=21.3 PAK=1 LLG=448 TFZ=
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| 124 | REMARK ENSEMBLE ense_1 EULER 85.64 26.78 33.91 FRAC 0.638 -0.995 -0.009
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| 125 | REMARK ENSEMBLE ense_1 EULER 209.19 65.83 106.96 FRAC -0.316 1.006 0.032
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| 126 | REMARK 3
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| 127 | REMARK 3 REFINEMENT.
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| 128 | REMARK 3 PROGRAM : BUSTER 2.10.3
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| 129 | REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
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| 130 | REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK;
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| 131 | REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
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| 132 | REMARK 3
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| 133 | REMARK 3 DATA USED IN REFINEMENT.
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| 134 | REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.95
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| 135 | REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.21
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| 136 | REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
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| 137 | REMARK 3 COMPLETENESS FOR RANGE (%) : 57.8
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| 138 | REMARK 3 NUMBER OF REFLECTIONS : 20345
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| 139 | REMARK 3
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| 140 | REMARK 3 FIT TO DATA USED IN REFINEMENT.
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| 141 | REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
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| 142 | REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
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| 143 | REMARK 3 R VALUE (WORKING + TEST SET) : 0.264
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| 144 | REMARK 3 R VALUE (WORKING SET) : 0.261
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| 145 | REMARK 3 FREE R VALUE : 0.303
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| 146 | REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
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| 147 | REMARK 3 FREE R VALUE TEST SET COUNT : 1015
|
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| 148 | REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
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| 149 | REMARK 3
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| 150 | REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
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| 151 | REMARK 3 TOTAL NUMBER OF BINS USED : 50
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| 152 | REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.95
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| 153 | REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.17
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| 154 | REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.68
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| 155 | REMARK 3 REFLECTIONS IN BIN (WORKING+TEST) : 407
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| 156 | REMARK 3 BIN R VALUE (WORKING+TEST) : 0.2265
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| 157 | REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 385
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| 158 | REMARK 3 BIN R VALUE (WORKING SET) : 0.2222
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| 159 | REMARK 3 BIN FREE R VALUE : 0.2995
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| 160 | REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41
|
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| 161 | REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22
|
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| 162 | REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
|
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| 163 | REMARK 3
|
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| 164 | REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
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| 165 | REMARK 3 PROTEIN ATOMS : 17810
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| 166 | REMARK 3 NUCLEIC ACID ATOMS : 0
|
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| 167 | REMARK 3 HETEROGEN ATOMS : 128
|
|---|
| 168 | REMARK 3 SOLVENT ATOMS : 0
|
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| 169 | REMARK 3
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| 170 | REMARK 3 B VALUES.
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| 171 | REMARK 3 FROM WILSON PLOT (A**2) : 178.80
|
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| 172 | REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.39
|
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| 173 | REMARK 3 OVERALL ANISOTROPIC B VALUE.
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| 174 | REMARK 3 B11 (A**2) : -2.45630
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| 175 | REMARK 3 B22 (A**2) : 13.44160
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| 176 | REMARK 3 B33 (A**2) : -10.98530
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| 177 | REMARK 3 B12 (A**2) : 0.00000
|
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| 178 | REMARK 3 B13 (A**2) : 13.44470
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| 179 | REMARK 3 B23 (A**2) : 0.00000
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| 180 | REMARK 3
|
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| 181 | REMARK 3 ESTIMATED COORDINATE ERROR.
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| 182 | REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.81
|
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| 183 | REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 1.290
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| 184 | REMARK 3
|
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| 185 | REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
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| 186 | REMARK 3
|
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| 187 | REMARK 3 CORRELATION COEFFICIENTS.
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| 188 | REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.601
|
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| 189 | REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.587
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| 190 | REMARK 3
|
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| 191 | REMARK 3 X-RAY WEIGHT : 31.66
|
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| 192 | REMARK 3
|
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| 193 | REMARK 3 GEOMETRY FUNCTION.
|
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| 194 | REMARK 3 RESTRAINT LIBRARIES.
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| 195 | REMARK 3 NUMBER OF LIBRARIES USED : 8
|
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| 196 | REMARK 3 LIBRARY 1 : protgeo_eh99.dat (V1.6.4.11) 20171211 STANDARD
|
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| 197 | REMARK 3 AMINO ACID DICTIONARY. BONDS AND ANGLES FROM
|
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| 198 | REMARK 3 ENGH AND HUBER EH99. OTHER VALUES BASED ON
|
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| 199 | REMARK 3 PREVIOUS TNT OR TAKEN FROM CCP4. INCLUDES
|
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| 200 | REMARK 3 HYDROGEN ATOMS.
|
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| 201 | REMARK 3 LIBRARY 2 : exoticaa.dat (V1.3.4.9) 20171211 COLLECTION OF
|
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| 202 | REMARK 3 NON-STANDARD AMINO ACIDS, MAINLY EH91 WITHOUT
|
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| 203 | REMARK 3 IDEAL DISTANCE INFO
|
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| 204 | REMARK 3 LIBRARY 3 : nuclgeo.dat (V1.13.4.5) 20151210
|
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| 205 | REMARK 3 LIBRARY 4 : bcorrel.dat (V1.15) 20080423
|
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| 206 | REMARK 3 LIBRARY 5 : contact.dat (V1.15.12.7) 20121002
|
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| 207 | REMARK 3 LIBRARY 6 : idealdist_contact.dat (V1.3.4.7) 20121011
|
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| 208 | REMARK 3 IDEAL-DISTANCE CONTACT TERM DATA AS USED IN
|
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| 209 | REMARK 3 PROLSQ. VALUES USED HERE ARE BASED ON THE REFMAC
|
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| 210 | REMARK 3 5.5 IMPLEMENTATION.
|
|---|
| 211 | REMARK 3 LIBRARY 7 : restraints for ATP (ADENOSINE-5_-TRIPHOSPHATE)
|
|---|
| 212 | REMARK 3 from cif dictionary ATP.cif; buster
|
|---|
| 213 | REMARK 3 common-compounds v 3.0 (25 Oct 2012) from GRADE
|
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| 214 | REMARK 3 1.2.0
|
|---|
| 215 | REMARK 3 LIBRARY 8 : assume.dat (V1.9.4.1) 20110113
|
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| 216 | REMARK 3
|
|---|
| 217 | REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
|
|---|
| 218 | REMARK 3 TERM COUNT WEIGHT FUNCTION.
|
|---|
| 219 | REMARK 3 BOND LENGTHS : 18206 ; 2.00 ; HARMONIC
|
|---|
| 220 | REMARK 3 BOND ANGLES : 24657 ; 2.00 ; HARMONIC
|
|---|
| 221 | REMARK 3 TORSION ANGLES : 6475 ; 2.00 ; SINUSOIDAL
|
|---|
| 222 | REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
|
|---|
| 223 | REMARK 3 GENERAL PLANES : 3061 ; 5.00 ; HARMONIC
|
|---|
| 224 | REMARK 3 ISOTROPIC THERMAL FACTORS : 18206 ; 20.00 ; HARMONIC
|
|---|
| 225 | REMARK 3 BAD NON-BONDED CONTACTS : 8 ; 5.00 ; SEMIHARMONIC
|
|---|
| 226 | REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
|
|---|
| 227 | REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
|
|---|
| 228 | REMARK 3 CHIRAL IMPROPER TORSION : 2493 ; 5.00 ; SEMIHARMONIC
|
|---|
| 229 | REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
|
|---|
| 230 | REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
|
|---|
| 231 | REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
|
|---|
| 232 | REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
|
|---|
| 233 | REMARK 3 IDEAL-DIST CONTACT TERM : 21908 ; 4.00 ; SEMIHARMONIC
|
|---|
| 234 | REMARK 3
|
|---|
| 235 | REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
|
|---|
| 236 | REMARK 3 BOND LENGTHS (A) : 0.010
|
|---|
| 237 | REMARK 3 BOND ANGLES (DEGREES) : 1.31
|
|---|
| 238 | REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.62
|
|---|
| 239 | REMARK 3 OTHER TORSION ANGLES (DEGREES) : 25.62
|
|---|
| 240 | REMARK 3
|
|---|
| 241 | REMARK 3 SIMILARITY.
|
|---|
| 242 | REMARK 3 NCS.
|
|---|
| 243 | REMARK 3 NCS METHOD: RESTRAINT LSSR (-AUTONCS)
|
|---|
| 244 | REMARK 3 TARGET RESTRAINTS.
|
|---|
| 245 | REMARK 3 TARGET REPRESENTATION : NONE
|
|---|
| 246 | REMARK 3 TARGET STRUCTURE : NULL
|
|---|
| 247 | REMARK 3
|
|---|
| 248 | REMARK 3 TLS DETAILS.
|
|---|
| 249 | REMARK 3 NUMBER OF TLS GROUPS : 4
|
|---|
| 250 | REMARK 3
|
|---|
| 251 | REMARK 3 TLS GROUP : 1
|
|---|
| 252 | REMARK 3 SET : { A|1 - A|322 B|1 - B|322 }
|
|---|
| 253 | REMARK 3 ORIGIN FOR THE GROUP (A): 35.9552 24.7790 24.0325
|
|---|
| 254 | REMARK 3 T TENSOR
|
|---|
| 255 | REMARK 3 T11: -0.2870 T22: -0.3039
|
|---|
| 256 | REMARK 3 T33: -0.3189 T12: -0.1432
|
|---|
| 257 | REMARK 3 T13: -0.1499 T23: -0.1603
|
|---|
| 258 | REMARK 3 L TENSOR
|
|---|
| 259 | REMARK 3 L11: 0.1349 L22: 4.9053
|
|---|
| 260 | REMARK 3 L33: -0.1059 L12: 2.7418
|
|---|
| 261 | REMARK 3 L13: -0.9343 L23: 3.0698
|
|---|
| 262 | REMARK 3 S TENSOR
|
|---|
| 263 | REMARK 3 S11: -0.1075 S12: -0.1097 S13: 0.5160
|
|---|
| 264 | REMARK 3 S21: 0.5377 S22: -0.2841 S23: -0.2154
|
|---|
| 265 | REMARK 3 S31: -0.5722 S32: 0.5319 S33: 0.3916
|
|---|
| 266 | REMARK 3
|
|---|
| 267 | REMARK 3 TLS GROUP : 2
|
|---|
| 268 | REMARK 3 SET : { C|1 - C|322 D|1 - D|322 }
|
|---|
| 269 | REMARK 3 ORIGIN FOR THE GROUP (A): -40.5223 -23.1551 53.2564
|
|---|
| 270 | REMARK 3 T TENSOR
|
|---|
| 271 | REMARK 3 T11: -0.1275 T22: -0.1313
|
|---|
| 272 | REMARK 3 T33: -0.2859 T12: -0.1432
|
|---|
| 273 | REMARK 3 T13: 0.1587 T23: -0.1603
|
|---|
| 274 | REMARK 3 L TENSOR
|
|---|
| 275 | REMARK 3 L11: 0.1008 L22: 0.8018
|
|---|
| 276 | REMARK 3 L33: -0.0643 L12: 2.8183
|
|---|
| 277 | REMARK 3 L13: -0.8913 L23: 1.7148
|
|---|
| 278 | REMARK 3 S TENSOR
|
|---|
| 279 | REMARK 3 S11: 0.0483 S12: -0.2697 S13: -0.5156
|
|---|
| 280 | REMARK 3 S21: 0.1809 S22: 0.4096 S23: 0.5420
|
|---|
| 281 | REMARK 3 S31: 0.5591 S32: -0.0821 S33: -0.4580
|
|---|
| 282 | REMARK 3
|
|---|
| 283 | REMARK 3 TLS GROUP : 3
|
|---|
| 284 | REMARK 3 SET : { A|336 - A|600 B|336 - B|600 }
|
|---|
| 285 | REMARK 3 ORIGIN FOR THE GROUP (A): 7.5677 -18.8234 8.3227
|
|---|
| 286 | REMARK 3 T TENSOR
|
|---|
| 287 | REMARK 3 T11: -0.2760 T22: -0.3025
|
|---|
| 288 | REMARK 3 T33: -0.0527 T12: -0.1432
|
|---|
| 289 | REMARK 3 T13: -0.1653 T23: -0.1603
|
|---|
| 290 | REMARK 3 L TENSOR
|
|---|
| 291 | REMARK 3 L11: 0.3343 L22: 0.0000
|
|---|
| 292 | REMARK 3 L33: 1.9000 L12: 2.7418
|
|---|
| 293 | REMARK 3 L13: -3.0157 L23: 3.0698
|
|---|
| 294 | REMARK 3 S TENSOR
|
|---|
| 295 | REMARK 3 S11: 0.1026 S12: -0.3401 S13: -0.5276
|
|---|
| 296 | REMARK 3 S21: -0.3151 S22: -0.2170 S23: 0.5273
|
|---|
| 297 | REMARK 3 S31: 0.5373 S32: -0.3587 S33: 0.1145
|
|---|
| 298 | REMARK 3
|
|---|
| 299 | REMARK 3 TLS GROUP : 4
|
|---|
| 300 | REMARK 3 SET : { C|336 - C|600 D|336 - D|600 }
|
|---|
| 301 | REMARK 3 ORIGIN FOR THE GROUP (A): -12.6948 20.6798 70.0209
|
|---|
| 302 | REMARK 3 T TENSOR
|
|---|
| 303 | REMARK 3 T11: -0.2525 T22: -0.3002
|
|---|
| 304 | REMARK 3 T33: -0.1277 T12: -0.1431
|
|---|
| 305 | REMARK 3 T13: -0.1600 T23: -0.1603
|
|---|
| 306 | REMARK 3 L TENSOR
|
|---|
| 307 | REMARK 3 L11: 0.3913 L22: 0.0000
|
|---|
| 308 | REMARK 3 L33: 2.7087 L12: 2.7418
|
|---|
| 309 | REMARK 3 L13: -2.3786 L23: 3.0698
|
|---|
| 310 | REMARK 3 S TENSOR
|
|---|
| 311 | REMARK 3 S11: -0.0604 S12: -0.5029 S13: 0.4424
|
|---|
| 312 | REMARK 3 S21: 0.4913 S22: 0.0990 S23: -0.2685
|
|---|
| 313 | REMARK 3 S31: -0.3718 S32: 0.1457 S33: -0.0386
|
|---|
| 314 | REMARK 3
|
|---|
| 315 | REMARK 3 REFINEMENT NOTES.
|
|---|
| 316 | REMARK 3 NUMBER OF REFINEMENT NOTES : 1
|
|---|
| 317 | REMARK 3 NOTE 1 : IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE
|
|---|
| 318 | REMARK 3 TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=MG. NUMBER
|
|---|
| 319 | REMARK 3 OF ATOMS WITH PROPER CCP4 ATOM TYPE=17934. NUMBER
|
|---|
| 320 | REMARK 3 WITH APPROX DEFAULT CCP4 ATOM TYPE=0. NUMBER
|
|---|
| 321 | REMARK 3 TREATED BY BAD NON-BONDED CONTACTS=4.
|
|---|
| 322 | REMARK 3
|
|---|
| 323 | REMARK 3 OTHER REFINEMENT REMARKS: NULL
|
|---|
| 324 | REMARK 3
|
|---|
| 325 | REMARK 290
|
|---|
| 326 | REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
|
|---|
| 327 | REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
|
|---|
| 328 | REMARK 290
|
|---|
| 329 | REMARK 290 SYMOP SYMMETRY
|
|---|
| 330 | REMARK 290 NNNMMM OPERATOR
|
|---|
| 331 | REMARK 290 1555 X,Y,Z
|
|---|
| 332 | REMARK 290 2555 -X,1/2+Y,-Z
|
|---|
| 333 | REMARK 290
|
|---|
| 334 | REMARK 290 WHERE NNN -> OPERATOR NUMBER
|
|---|
| 335 | REMARK 290 MMM -> TRANSLATION VECTOR
|
|---|
| 336 | REMARK 290
|
|---|
| 337 | REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
|
|---|
| 338 | REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
|
|---|
| 339 | REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
|
|---|
| 340 | REMARK 290 RELATED MOLECULES.
|
|---|
| 341 | REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
|
|---|
| 342 | REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
|
|---|
| 343 | REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
|
|---|
| 344 | REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
|
|---|
| 345 | REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.37700
|
|---|
| 346 | REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
|
|---|
| 347 | REMARK 290
|
|---|
| 348 | REMARK 290 REMARK: NULL
|
|---|
| 349 | HELIX 1 1 THR C 381 PHE C 384 1 4
|
|---|
| 350 | CISPEP 1 LYS A 351 PRO A 352 0 -1.48
|
|---|
| 351 | CISPEP 2 SER A 392 PRO A 393 0 -5.91
|
|---|
| 352 | CISPEP 3 SER B 392 PRO B 393 0 -4.92
|
|---|
| 353 | CISPEP 4 LYS C 351 PRO C 352 0 -2.16
|
|---|
| 354 | CISPEP 5 LYS D 351 PRO D 352 0 -1.51
|
|---|
| 355 | CISPEP 6 SER D 392 PRO D 393 0 -5.41
|
|---|
| 356 | CRYST1 117.805 110.754 155.615 90.00 93.23 90.00 P 1 21 1
|
|---|
| 357 | ATOM 1 N GLY C 374 -11.977 31.264 60.470 1.00 21.35 N
|
|---|
| 358 | ATOM 2 CA GLY C 374 -13.310 31.758 60.119 1.00 22.06 C
|
|---|
| 359 | ATOM 3 C GLY C 374 -14.395 31.383 61.114 1.00 20.12 C
|
|---|
| 360 | ATOM 4 O GLY C 374 -14.506 30.196 61.435 1.00 15.69 O
|
|---|
| 361 | ATOM 5 N PRO C 375 -15.221 32.346 61.636 1.00 45.93 N
|
|---|
| 362 | ATOM 6 CA PRO C 375 -16.263 31.969 62.609 1.00 46.70 C
|
|---|
| 363 | ATOM 7 C PRO C 375 -17.278 30.988 62.031 1.00 41.65 C
|
|---|
| 364 | ATOM 8 O PRO C 375 -17.606 31.082 60.840 1.00 16.23 O
|
|---|
| 365 | ATOM 9 CB PRO C 375 -16.889 33.304 63.008 1.00 54.58 C
|
|---|
| 366 | ATOM 10 CG PRO C 375 -16.608 34.194 61.877 1.00 56.37 C
|
|---|
| 367 | ATOM 11 CD PRO C 375 -15.256 33.796 61.377 1.00 50.13 C
|
|---|
| 368 | ATOM 12 N SER C 376 -17.711 30.013 62.884 1.00 40.38 N
|
|---|
| 369 | ATOM 13 CA SER C 376 -18.638 28.892 62.642 1.00 14.11 C
|
|---|
| 370 | ATOM 14 C SER C 376 -19.614 29.102 61.486 1.00 38.21 C
|
|---|
| 371 | ATOM 15 O SER C 376 -20.283 30.136 61.391 1.00 44.50 O
|
|---|
| 372 | ATOM 16 CB SER C 376 -19.391 28.517 63.918 1.00 13.24 C
|
|---|
| 373 | ATOM 17 OG SER C 376 -20.417 27.567 63.687 1.00 36.39 O
|
|---|
| 374 | ATOM 18 N GLY C 377 -19.671 28.099 60.622 1.00 6.82 N
|
|---|
| 375 | ATOM 19 CA GLY C 377 -20.525 28.107 59.443 1.00 34.78 C
|
|---|
| 376 | ATOM 20 C GLY C 377 -19.929 28.899 58.303 1.00 38.46 C
|
|---|
| 377 | ATOM 21 O GLY C 377 -20.661 29.426 57.459 1.00 39.68 O
|
|---|
| 378 | ATOM 22 N GLY C 378 -18.603 28.968 58.286 1.00 40.48 N
|
|---|
| 379 | ATOM 23 CA GLY C 378 -17.867 29.694 57.270 1.00 44.73 C
|
|---|
| 380 | ATOM 24 C GLY C 378 -17.821 28.939 55.967 1.00 14.87 C
|
|---|
| 381 | ATOM 25 O GLY C 378 -18.674 29.127 55.096 1.00 8.65 O
|
|---|
| 382 | ATOM 26 N GLY C 379 -16.832 28.070 55.861 1.00 6.83 N
|
|---|
| 383 | ATOM 27 CA GLY C 379 -16.584 27.268 54.673 1.00 5.85 C
|
|---|
| 384 | ATOM 28 C GLY C 379 -15.196 26.662 54.676 1.00 5.23 C
|
|---|
| 385 | ATOM 29 O GLY C 379 -14.665 26.292 53.617 1.00 5.29 O
|
|---|
| 386 | ATOM 30 N LYS C 380 -14.608 26.549 55.888 1.00 4.83 N
|
|---|
| 387 | ATOM 31 CA LYS C 380 -13.270 25.988 56.113 1.00 4.34 C
|
|---|
| 388 | ATOM 32 C LYS C 380 -13.266 24.502 55.720 1.00 3.00 C
|
|---|
| 389 | ATOM 33 O LYS C 380 -12.822 24.184 54.618 1.00 3.00 O
|
|---|
| 390 | ATOM 34 CB LYS C 380 -12.803 26.193 57.575 1.00 4.41 C
|
|---|
| 391 | ATOM 35 CG LYS C 380 -13.111 27.577 58.163 1.00 6.05 C
|
|---|
| 392 | ATOM 36 CD LYS C 380 -12.684 27.700 59.623 1.00 6.44 C
|
|---|
| 393 | ATOM 37 CE LYS C 380 -13.565 26.933 60.584 1.00 5.11 C
|
|---|
| 394 | ATOM 38 NZ LYS C 380 -12.910 26.690 61.895 1.00 5.22 N
|
|---|
| 395 | ATOM 39 N THR C 381 -13.847 23.621 56.566 1.00 3.00 N
|
|---|
| 396 | ATOM 40 CA THR C 381 -13.927 22.185 56.321 1.00 3.00 C
|
|---|
| 397 | ATOM 41 C THR C 381 -14.333 21.868 54.888 1.00 3.00 C
|
|---|
| 398 | ATOM 42 O THR C 381 -13.611 21.109 54.240 1.00 3.00 O
|
|---|
| 399 | ATOM 43 CB THR C 381 -14.960 21.560 57.277 1.00 3.00 C
|
|---|
| 400 | ATOM 44 OG1 THR C 381 -16.239 22.144 57.023 1.00 3.00 O
|
|---|
| 401 | ATOM 45 CG2 THR C 381 -14.551 21.840 58.725 1.00 3.00 C
|
|---|
| 402 | ATOM 46 N THR C 382 -15.431 22.491 54.368 1.00 3.00 N
|
|---|
| 403 | ATOM 47 CA THR C 382 -15.904 22.273 52.986 1.00 3.00 C
|
|---|
| 404 | ATOM 48 C THR C 382 -14.760 22.411 51.995 1.00 3.00 C
|
|---|
| 405 | ATOM 49 O THR C 382 -14.559 21.499 51.193 1.00 3.00 O
|
|---|
| 406 | ATOM 50 CB THR C 382 -17.058 23.201 52.588 1.00 3.00 C
|
|---|
| 407 | ATOM 51 CG2 THR C 382 -18.336 22.921 53.350 1.00 3.00 C
|
|---|
| 408 | ATOM 52 OG1 THR C 382 -16.645 24.555 52.748 1.00 3.00 O
|
|---|
| 409 | ATOM 53 N LEU C 383 -13.960 23.497 52.113 1.00 3.00 N
|
|---|
| 410 | ATOM 54 CA LEU C 383 -12.816 23.746 51.246 1.00 3.57 C
|
|---|
| 411 | ATOM 55 C LEU C 383 -11.803 22.601 51.205 1.00 3.00 C
|
|---|
| 412 | ATOM 56 O LEU C 383 -11.247 22.329 50.145 1.00 3.22 O
|
|---|
| 413 | ATOM 57 CB LEU C 383 -12.139 25.050 51.606 1.00 5.17 C
|
|---|
| 414 | ATOM 58 CG LEU C 383 -11.517 25.744 50.429 1.00 10.05 C
|
|---|
| 415 | ATOM 59 CD1 LEU C 383 -12.104 27.128 50.248 1.00 11.50 C
|
|---|
| 416 | ATOM 60 CD2 LEU C 383 -10.014 25.763 50.546 1.00 15.02 C
|
|---|
| 417 | ATOM 61 N PHE C 384 -11.609 21.900 52.328 1.00 3.00 N
|
|---|
| 418 | ATOM 62 CA PHE C 384 -10.677 20.772 52.428 1.00 3.00 C
|
|---|
| 419 | ATOM 63 C PHE C 384 -11.194 19.515 51.780 1.00 3.00 C
|
|---|
| 420 | ATOM 64 O PHE C 384 -10.404 18.730 51.263 1.00 3.00 O
|
|---|
| 421 | ATOM 65 CB PHE C 384 -10.265 20.533 53.876 1.00 3.00 C
|
|---|
| 422 | ATOM 66 CG PHE C 384 -9.540 21.754 54.363 1.00 3.00 C
|
|---|
| 423 | ATOM 67 CD1 PHE C 384 -8.182 21.913 54.125 1.00 3.00 C
|
|---|
| 424 | ATOM 68 CD2 PHE C 384 -10.236 22.809 54.938 1.00 3.00 C
|
|---|
| 425 | ATOM 69 CE1 PHE C 384 -7.520 23.087 54.505 1.00 6.54 C
|
|---|
| 426 | ATOM 70 CE2 PHE C 384 -9.587 23.996 55.279 1.00 3.53 C
|
|---|
| 427 | ATOM 71 CZ PHE C 384 -8.228 24.125 55.071 1.00 7.35 C
|
|---|
| 428 | TER 72 PHE C 384
|
|---|
| 429 | HETATM 73 PA ATP I 4 -18.274 23.902 57.008 1.00 20.00 P
|
|---|
| 430 | HETATM 74 PB ATP I 4 -16.830 25.474 58.937 1.00 20.00 P
|
|---|
| 431 | HETATM 75 PG ATP I 4 -16.635 25.050 61.855 1.00 20.00 P
|
|---|
| 432 | HETATM 76 C5' ATP I 4 -20.299 25.178 55.866 1.00 20.00 C
|
|---|
| 433 | HETATM 77 O5' ATP I 4 -19.734 23.928 56.304 1.00 20.00 O
|
|---|
| 434 | HETATM 78 C4' ATP I 4 -21.809 25.192 55.867 1.00 20.00 C
|
|---|
| 435 | HETATM 79 O4' ATP I 4 -22.342 24.306 54.867 1.00 20.00 O
|
|---|
| 436 | HETATM 80 C3' ATP I 4 -22.557 24.769 57.124 1.00 20.00 C
|
|---|
| 437 | HETATM 81 O3' ATP I 4 -22.540 25.772 58.131 1.00 20.00 O
|
|---|
| 438 | HETATM 82 C2' ATP I 4 -23.980 24.593 56.586 1.00 20.00 C
|
|---|
| 439 | HETATM 83 O2' ATP I 4 -24.672 25.841 56.585 1.00 20.00 O
|
|---|
| 440 | HETATM 84 C1' ATP I 4 -23.728 24.157 55.130 1.00 20.00 C
|
|---|
| 441 | HETATM 85 N1 ATP I 4 -22.505 19.129 54.991 1.00 20.00 N
|
|---|
| 442 | HETATM 86 O1A ATP I 4 -17.961 22.589 57.606 1.00 20.00 O
|
|---|
| 443 | HETATM 87 O1B ATP I 4 -16.806 26.944 59.106 1.00 20.00 O
|
|---|
| 444 | HETATM 88 O1G ATP I 4 -15.568 24.338 62.593 1.00 20.00 O
|
|---|
| 445 | HETATM 89 C2 ATP I 4 -21.838 20.190 55.460 1.00 20.00 C
|
|---|
| 446 | HETATM 90 O2A ATP I 4 -17.203 24.222 55.980 1.00 20.00 O
|
|---|
| 447 | HETATM 91 O2B ATP I 4 -15.654 25.044 58.111 1.00 20.00 O
|
|---|
| 448 | HETATM 92 O2G ATP I 4 -16.454 26.546 61.895 1.00 20.00 O
|
|---|
| 449 | HETATM 93 N3 ATP I 4 -22.213 21.474 55.476 1.00 20.00 N
|
|---|
| 450 | HETATM 94 O3A ATP I 4 -18.121 25.034 58.117 1.00 20.00 O
|
|---|
| 451 | HETATM 95 O3B ATP I 4 -16.723 24.668 60.309 1.00 20.00 O
|
|---|
| 452 | HETATM 96 O3G ATP I 4 -17.999 24.773 62.461 1.00 20.00 O
|
|---|
| 453 | HETATM 97 C4 ATP I 4 -23.437 21.628 54.943 1.00 20.00 C
|
|---|
| 454 | HETATM 98 C5 ATP I 4 -24.249 20.628 54.432 1.00 20.00 C
|
|---|
| 455 | HETATM 99 C6 ATP I 4 -23.736 19.316 54.456 1.00 20.00 C
|
|---|
| 456 | HETATM 100 N6 ATP I 4 -24.393 18.259 53.980 1.00 20.00 N
|
|---|
| 457 | HETATM 101 N7 ATP I 4 -25.457 21.150 53.997 1.00 20.00 N
|
|---|
| 458 | HETATM 102 C8 ATP I 4 -25.348 22.433 54.244 1.00 20.00 C
|
|---|
| 459 | HETATM 103 N9 ATP I 4 -24.151 22.795 54.806 1.00 20.00 N
|
|---|
| 460 | HETATM 104 MG MG J 4 -15.185 23.572 59.839 1.00 30.00 Mg
|
|---|
| 461 | CONECT 61 62 55
|
|---|
| 462 | CONECT 62 61 65 63
|
|---|
| 463 | CONECT 63 62 64
|
|---|
| 464 | CONECT 64 63
|
|---|
| 465 | CONECT 65 62 66
|
|---|
| 466 | CONECT 66 65 67 68
|
|---|
| 467 | CONECT 67 66 69
|
|---|
| 468 | CONECT 68 66 70
|
|---|
| 469 | CONECT 69 67 71
|
|---|
| 470 | CONECT 70 68 71
|
|---|
| 471 | CONECT 71 69 70
|
|---|
| 472 | CONECT 73 77 86 90 94
|
|---|
| 473 | CONECT 74 87 91 94 95
|
|---|
| 474 | CONECT 75 88 92 95 96
|
|---|
| 475 | CONECT 76 77 78
|
|---|
| 476 | CONECT 77 73 76
|
|---|
| 477 | CONECT 78 76 79 80
|
|---|
| 478 | CONECT 79 78 84
|
|---|
| 479 | CONECT 80 78 81 82
|
|---|
| 480 | CONECT 81 80
|
|---|
| 481 | CONECT 82 80 83 84
|
|---|
| 482 | CONECT 83 82
|
|---|
| 483 | CONECT 84 79 82 103
|
|---|
| 484 | CONECT 85 89 99
|
|---|
| 485 | CONECT 86 73
|
|---|
| 486 | CONECT 87 74
|
|---|
| 487 | CONECT 88 75
|
|---|
| 488 | CONECT 89 85 93
|
|---|
| 489 | CONECT 90 73
|
|---|
| 490 | CONECT 91 74
|
|---|
| 491 | CONECT 92 75
|
|---|
| 492 | CONECT 93 89 97
|
|---|
| 493 | CONECT 94 73 74
|
|---|
| 494 | CONECT 95 74 75
|
|---|
| 495 | CONECT 96 75
|
|---|
| 496 | CONECT 97 93 98 103
|
|---|
| 497 | CONECT 98 97 99 101
|
|---|
| 498 | CONECT 99 85 98 100
|
|---|
| 499 | CONECT 100 99
|
|---|
| 500 | CONECT 101 98 102
|
|---|
| 501 | CONECT 102 101 103
|
|---|
| 502 | CONECT 103 84 97 102
|
|---|
| 503 | END
|
|---|