| 1 | # PDB 5ego (HOXB13-MEIS1 heterodimer bound to methylated DNA)
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| 2 | # protein shown as ribbons, DNA shown as molecular surface; braced for 3D print
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| 3 | # with pseudobonds, some defined manually, more added with the struts command
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| 4 | open 5ego
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| 5 | hide atoms
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| 6 | show @ca
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| 7 | show nucleic
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| 8 | cartoon protein
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| 9 | car style sides 24
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| 10 | ~cartoon nucleic
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| 11 | color /a 90,90,30
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| 12 | color /b salmon
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| 13 | surf nucleic enclose nucleic probe 1.1
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| 14 | color nucleic light sea green
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| 15 | # open pbond file: protein-nucleic pseudobonds based on H-bonds, but edited to
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| 16 | # go to CA instead of sidechain atoms and pruned to 1 pbond per residue pair
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| 17 | open 5ego.pb
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| 18 | style dashes 0
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| 19 | color blue targ p
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| 20 | # supplement with calculated struts
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| 21 | struts @ca,p color silver
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| 22 | light gentle
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| 23 | set bg white
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| 24 | windowsize 800 600
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