Ticket #7885: cmds.cxc

open 7PFO
select /N
delete atoms sel
delete bonds sel
hide atoms
show cartoons
set bgColor white
select /C
select /Q
delete atoms (#!1 & sel)
delete bonds (#!1 & sel)
select /M
delete atoms (#!1 & sel)
delete bonds (#!1 & sel)
select /H/I/J
delete atoms sel
delete bonds sel
select /K
delete atoms (#!1 & sel)
delete bonds (#!1 & sel)
select /L
delete atoms sel
delete bonds sel
select /D
select :83/D
select clear
select :83/D
select :83
select /D:83
select clear
select /D:83
show sel atoms
style sel stick
select /D:22
select /D:23
select add /D:22
select add /D:24
style sel stick
show sel atoms
select /D:107
select add /D:106
show sel atoms
show sel cartoons
style sel stick
style sel ball
style sel stick
select /D:83
color sel red
color sel orange
select clear
select /D:83
select add /D:106
select add /D:23
select add /D:24
select add /D:22
color sel byhetero
select /D:83
color sel byhetero
select /5:394
select clear
select /D:83
ui tool show "Change Chain IDs"
ui tool show "Build Structure"
select /D:22
select add /D:24
select add /D:83
select add /D:107
select add /D:106
select ~sel
show sel surfaces
hide sel surfaces
select clear
select /D:83
select /D:152
show sel atoms
style sel stick
color (#!1 & sel) byhetero
color (#!1 & sel) lime
color (#!1 & sel) byhetero
ui tool show Matchmaker
ui mousemode right "pick blobs"
select clear
open 7z13
select #2/L
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/A#2/B
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #1/2
select #2/2
select #2/a
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/b
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/c
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/e
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/f
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/O
delete atoms sel
delete bonds sel
select #2/P
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/J
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/K
delete atoms sel
delete bonds sel
select #2/M
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/Q
select #2/N
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
select #2/d
delete atoms (#!2 & sel)
delete bonds (#!2 & sel)
hide atoms
show cartoons
ui tool show Matchmaker
matchmaker #!2 to #1
select #1/2#2/2
select #1/D#2/H
select #2/E
ui tool show Matchmaker
select #1/D#2/H
select #1/D#2/H
select ~sel
hide (#!1-2 & sel) target a
cartoon hide (#!1-2 & sel)
select /D:84
select /H:84
select #1/F#2/C
show sel cartoons
select /H:84
select clear
select /H:164
select /H:161-164
ui dockable false "Side View"
ui dockable true "Side View"
show sel surfaces
hide sel surfaces
style sel sphere
show sel atoms
style sel ball
style sel stick
nucleotides sel atoms
style nucleic & sel stick
nucleotides sel fill
style nucleic & sel stick
nucleotides sel fill
style nucleic & sel stick
nucleotides sel ladder
nucleotides sel tube/slab shape box
nucleotides sel atoms
style nucleic & sel stick
style sel sphere
style sel stick
hide sel atoms
select #2/F
select #2/F
show sel cartoons
hide sel cartoons
select #2/E
show sel cartoons
select /H:161-164
select #1/C
show sel cartoons
select #2/F
show sel cartoons
select /H:161-164
show sel atoms
select #1/D:152
select #2/H:166
select #2/H:167
select #1/D:152
select #2/H:167
show sel atoms
style sel stick
select clear
select /H:161-164
select #1/D:152
select add #1/D:153
select add #1/D:154
select add #1/D:171
style sel stick
show sel atoms
select add #1/D:155
select subtract #1/D:155
select add #1/D:156
select add #1/D:155
show sel atoms
style sel stick
style sel sphere
style sel stick
select #1/D#2/H
coulombic sel
select /H:161-164
select /H:152
select /H:167
mlp sel
select #1/D#2/H
mlp sel
select /H:167
hide sel cartoons
surface style #!2.4 mesh
surface style #2 dot
surface style #2 mesh
transparency (#!2 & sel) 50
hide sel surfaces
show sel surfaces
surface hidePatches (#!2 & sel)
select #1/D#2/H
surface style #2#!1.13 mesh
surface style #2#1.13 dot
surface style #2#1.13 mesh
transparency (#!1-2 & sel) 50
show sel cartoons
select /H:167
select /H:161-164
select #1/D#2/H
surface style #2#1.13 solid
transparency (#!1-2 & sel) 30
transparency (#!1-2 & sel) 70
transparency (#!1-2 & sel) 60
select /H:161-164
select #1/E#2/I
show sel cartoons
select /H:161-164
select /H:164
select #1/D
hide sel surfaces
hide sel cartoons
hide sel atoms
select #1/E
hide sel surfaces
hide sel cartoons
hide sel atoms
hide sel surfaces
select #1/C
hide sel surfaces
hide sel cartoons
hide sel atoms
select #1/A
hide sel surfaces
hide sel cartoons
hide sel atoms
select /H:164
coulombic sel
select /H:207
coulombic sel
select /H:207,164
select /H:207,164
select /E:50
select /H:207,164
select #2/E:50
select /H:207,164
select add #2/E:50
coulombic sel
transparency (#!2 & sel) 50
show sel atoms
style sel stick
style sel sphere
style sel ball
style sel stick
style sel ball
select /F
hide (#!1-2 & sel) target a
hide sel cartoons
show sel cartoons
select #1/A
select #1/F
hide sel cartoons
select #2/F:19
select add #2/H:176
ui tool show Distances
show sel atoms
style sel stick
select #2/H:176
select #2/H:176
select #2/H:176
select #2/F:34
select add #2/H:174
style sel stick
style sel stick
show sel atoms
select clear
select #2/H:176
select add #2/H:175
select add #2/H:174
select add #2/H:173
show sel atoms
style sel stick
select #2/F:35
select add #2/F:31
select add #2/F:26
style sel stick
show sel atoms
select #2/H:173@CA
select #2/H:174
select add #2/H:173
select add #2/H:175
select add #2/F:35
select add #2/F:34
select add #2/F:33
select add #2/F:32
select add #2/F:31
show sel surfaces
hide sel surfaces
hbonds sel reveal true
select /H:207,164
select #2/E:50@CE
select /H:207,164
select add #2/E:50@CE
hbonds sel reveal true
hide sel surfaces
hide sel cartoons
show sel cartoons
select add #2/E:50@CG
hide sel surfaces
select subtract #2/E:50
select add #2/E:50
hide sel surfaces
hbonds sel reveal true
select /H:167
hbonds sel reveal true
mlp sel
coulombic sel
ui tool show "Show Sequence Viewer"
sequence chain #2/H
select #2/H:162-167,173-176,179-182,188-192,205-206
select #2/H:165
select #2/H:165-171
select #2/H:172
select #2/H:172-173
select #2/H:108-109
select #2/H:108-111
select #2/H:160
select #2/H:160-161
select #2/H:155
select #2/H:155
select #2/H:161
select #2/H:161
select sel @< 5
select #2/H:162
select #2/H:162
select #2/H:161
select #2/H:161
select sel @< 5
select #2/H:156
select #2/H:156
select sel @< 3
select sel @< 3
select sel @< 3
select sel @< 3
select sel @< 3
select #2/H:156
select #2/H:156-157
select #2/H:156
select #2/H:156
select clear
select #2/H:156-157
select #2/H:156
select #2/H:167
select #2/H:167
select sel @< 3
select #2/H:167
select #2/H:167
select sel @< 5
select #2/H:167
select #2/H:167
select sel :< 5
select #2/H:167
select #2/H:167
select sel :< 0
select #2/H:167
select #2/H:167