Changes between Initial Version and Version 1 of Ticket #19908


Ignore:
Timestamp:
Feb 27, 2026, 8:43:42 AM (17 hours ago)
Author:
Eric Pettersen
Comment:

Reported by Zac Campbell

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #19908

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → glClear: invalid framebuffer operation on statusbar expose

  • Ticket #19908 – Description

    initial v1  
    29412941> #51,-0.97091,-0.2123,-0.11078,494.57,0.13165,-0.086774,-0.98749,235.03,0.20003,-0.97334,0.1122,457.06,#52,-0.97462,-0.2048,-0.090447,489.54,0.11033,-0.087832,-0.99001,241.09,0.19481,-0.97486,0.1082,458.9,#53,-0.96844,-0.22878,-0.098881,490.63,0.12558,-0.10523,-0.98649,241.34,0.21528,-0.96777,0.13063,447.4,#54,-0.97829,-0.18803,-0.087125,480.75,0.11548,-0.14554,-0.98259,252.92,0.17207,-0.97132,0.1641,448.53,#55,-0.96391,-0.24294,-0.10889,498.18,0.12844,-0.066083,-0.98951,228.39,0.2332,-0.96779,0.094901,452.9,#56,-0.97366,-0.19773,-0.11349,486.82,0.14408,-0.14788,-0.97846,245.46,0.17669,-0.96904,0.17247,447.12,#57,-0.97024,-0.22488,-0.08973,487.8,0.12083,-0.12856,-0.98431,247.38,0.20982,-0.96587,0.15191,442.13
    29422942
    2943 > view matrix models
    2944 > #51,-0.97393,-0.1819,-0.13551,493.9,0.14991,-0.067849,-0.98637,227.14,0.17023,-0.98097,0.09335,468.55,#52,-0.97793,-0.17438,-0.11512,488.93,0.12876,-0.069049,-0.98927,233.29,0.16456,-0.98225,0.089978,470.31,#53,-0.97211,-0.19895,-0.12421,490.41,0.14357,-0.086015,-0.98589,233.68,0.18546,-0.97623,0.11218,458.86,#54,-0.98074,-0.15897,-0.11348,480.75,0.13432,-0.12716,-0.98274,245.45,0.1418,-0.97906,0.14606,459.85,#55,-0.96811,-0.21226,-0.1331,497.5,0.14607,-0.046576,-0.98818,220.49,0.20355,-0.9761,0.076095,464.41,#56,-0.97566,-0.1688,-0.14001,486.7,0.16274,-0.12931,-0.97816,237.89,0.14701,-0.97713,0.15363,458.53,#57,-0.97383,-0.19562,-0.11572,487.88,0.13894,-0.10945,-0.98423,239.86,0.17987,-0.97455,0.13377,453.6
    2945 
    2946 > view matrix models
    2947 > #51,-0.97393,-0.1819,-0.13551,632.17,0.14991,-0.067849,-0.98637,358.05,0.17023,-0.98097,0.09335,365.86,#52,-0.97793,-0.17438,-0.11512,627.2,0.12876,-0.069049,-0.98927,364.2,0.16456,-0.98225,0.089978,367.63,#53,-0.97211,-0.19895,-0.12421,628.68,0.14357,-0.086015,-0.98589,364.59,0.18546,-0.97623,0.11218,356.18,#54,-0.98074,-0.15897,-0.11348,619.02,0.13432,-0.12716,-0.98274,376.37,0.1418,-0.97906,0.14606,357.16,#55,-0.96811,-0.21226,-0.1331,635.77,0.14607,-0.046576,-0.98818,351.4,0.20355,-0.9761,0.076095,361.73,#56,-0.97566,-0.1688,-0.14001,624.97,0.16274,-0.12931,-0.97816,368.8,0.14701,-0.97713,0.15363,355.84,#57,-0.97383,-0.19562,-0.11572,626.15,0.13894,-0.10945,-0.98423,370.77,0.17987,-0.97455,0.13377,350.92
    2948 
    2949 > view matrix models
    2950 > #51,-0.97393,-0.1819,-0.13551,572.63,0.14991,-0.067849,-0.98637,460.15,0.17023,-0.98097,0.09335,398.29,#52,-0.97793,-0.17438,-0.11512,567.66,0.12876,-0.069049,-0.98927,466.3,0.16456,-0.98225,0.089978,400.06,#53,-0.97211,-0.19895,-0.12421,569.15,0.14357,-0.086015,-0.98589,466.69,0.18546,-0.97623,0.11218,388.61,#54,-0.98074,-0.15897,-0.11348,559.48,0.13432,-0.12716,-0.98274,478.46,0.1418,-0.97906,0.14606,389.59,#55,-0.96811,-0.21226,-0.1331,576.23,0.14607,-0.046576,-0.98818,453.5,0.20355,-0.9761,0.076095,394.16,#56,-0.97566,-0.1688,-0.14001,565.43,0.16274,-0.12931,-0.97816,470.9,0.14701,-0.97713,0.15363,388.27,#57,-0.97383,-0.19562,-0.11572,566.61,0.13894,-0.10945,-0.98423,472.87,0.17987,-0.97455,0.13377,383.35
    2951 
    2952 > view matrix models
    2953 > #51,-0.97393,-0.1819,-0.13551,564.96,0.14991,-0.067849,-0.98637,462.97,0.17023,-0.98097,0.09335,404.17,#52,-0.97793,-0.17438,-0.11512,559.99,0.12876,-0.069049,-0.98927,469.12,0.16456,-0.98225,0.089978,405.93,#53,-0.97211,-0.19895,-0.12421,561.47,0.14357,-0.086015,-0.98589,469.51,0.18546,-0.97623,0.11218,394.48,#54,-0.98074,-0.15897,-0.11348,551.81,0.13432,-0.12716,-0.98274,481.28,0.1418,-0.97906,0.14606,395.47,#55,-0.96811,-0.21226,-0.1331,568.56,0.14607,-0.046576,-0.98818,456.32,0.20355,-0.9761,0.076095,400.03,#56,-0.97566,-0.1688,-0.14001,557.76,0.16274,-0.12931,-0.97816,473.72,0.14701,-0.97713,0.15363,394.15,#57,-0.97383,-0.19562,-0.11572,558.94,0.13894,-0.10945,-0.98423,475.69,0.17987,-0.97455,0.13377,389.22
    2954 
    2955 > view matrix models
    2956 > #51,-0.95604,-0.23125,-0.18031,579.42,0.20307,-0.07852,-0.97601,451.71,0.21154,-0.96972,0.12203,387.62,#52,-0.96135,-0.22387,-0.16026,574.85,0.18204,-0.080129,-0.98002,458.14,0.20655,-0.97132,0.11778,389.47,#53,-0.95382,-0.24894,-0.16812,575.81,0.19695,-0.095688,-0.97573,458.22,0.22681,-0.96378,0.1403,377.96,#54,-0.96496,-0.21126,-0.15565,566.81,0.18727,-0.13888,-0.97244,470.49,0.18383,-0.96751,0.17357,379.12,#55,-0.94884,-0.26024,-0.1788,582.48,0.19961,-0.055625,-0.9783,444.8,0.24464,-0.96394,0.10473,383.48,#56,-0.95821,-0.22108,-0.18153,572.3,0.21549,-0.14048,-0.96635,462.61,0.18814,-0.96508,0.18225,377.7,#57,-0.95603,-0.24672,-0.15854,573.35,0.1923,-0.11923,-0.97407,464.42,0.22142,-0.96172,0.16143,372.68
    2957 
    2958 > view matrix models
    2959 > #51,-0.95604,-0.23125,-0.18031,561.64,0.20307,-0.07852,-0.97601,440.77,0.21154,-0.96972,0.12203,385.13,#52,-0.96135,-0.22387,-0.16026,557.07,0.18204,-0.080129,-0.98002,447.2,0.20655,-0.97132,0.11778,386.99,#53,-0.95382,-0.24894,-0.16812,558.03,0.19695,-0.095688,-0.97573,447.28,0.22681,-0.96378,0.1403,375.47,#54,-0.96496,-0.21126,-0.15565,549.03,0.18727,-0.13888,-0.97244,459.55,0.18383,-0.96751,0.17357,376.63,#55,-0.94884,-0.26024,-0.1788,564.7,0.19961,-0.055625,-0.9783,433.85,0.24464,-0.96394,0.10473,380.99,#56,-0.95821,-0.22108,-0.18153,554.52,0.21549,-0.14048,-0.96635,451.66,0.18814,-0.96508,0.18225,375.21,#57,-0.95603,-0.24672,-0.15854,555.57,0.1923,-0.11923,-0.97407,453.47,0.22142,-0.96172,0.16143,370.2
    2960 
    2961 > view matrix models
    2962 > #51,-0.95663,-0.23097,-0.17749,561.18,0.20176,-0.085897,-0.97566,442.44,0.21011,-0.96916,0.12877,384.05,#52,-0.96188,-0.22359,-0.15744,556.59,0.18069,-0.087496,-0.97964,448.87,0.20526,-0.97075,0.12456,385.86,#53,-0.95439,-0.24862,-0.16531,557.55,0.19576,-0.10307,-0.97522,448.88,0.22542,-0.9631,0.14704,374.34,#54,-0.9655,-0.21082,-0.15285,548.51,0.18575,-0.14618,-0.97166,461.13,0.1825,-0.96653,0.18029,375.42,#55,-0.94943,-0.26003,-0.17598,564.26,0.19856,-0.063046,-0.97806,435.51,0.24323,-0.96354,0.11149,379.95,#56,-0.95884,-0.22063,-0.17875,554.03,0.21402,-0.1478,-0.96558,453.25,0.18662,-0.9641,0.18893,374.05,#57,-0.95659,-0.24633,-0.15574,555.07,0.19107,-0.12659,-0.97338,455.03,0.22006,-0.96088,0.16816,369.02
    2963 
    2964 > view matrix models
    2965 > #51,-0.97658,-0.16476,-0.13833,544.88,0.15235,-0.075648,-0.98543,452.87,0.15189,-0.98343,0.098977,405.03,#52,-0.9805,-0.15722,-0.11789,539.89,0.13116,-0.076866,-0.98838,459.04,0.14633,-0.98457,0.095988,406.66,#53,-0.97503,-0.18191,-0.12736,541.58,0.14613,-0.093756,-0.98481,459.34,0.1672,-0.97884,0.118,395.24,#54,-0.98291,-0.14194,-0.11723,531.91,0.13654,-0.13497,-0.9814,471.13,0.12348,-0.98063,0.15204,395.95,#55,-0.97135,-0.19517,-0.13562,548.55,0.14877,-0.054303,-0.98738,446.18,0.18535,-0.97926,0.081783,401.02,#56,-0.97788,-0.1518,-0.14388,537.88,0.16499,-0.13709,-0.97672,463.55,0.12854,-0.97886,0.15911,394.8,#57,-0.97666,-0.17864,-0.11925,539.14,0.14146,-0.11718,-0.98298,465.48,0.16162,-0.97691,0.13972,389.88
    2966 
    2967 > view matrix models
    2968 > #51,-0.97658,-0.16476,-0.13833,532.51,0.15235,-0.075648,-0.98543,455.86,0.15189,-0.98343,0.098977,414.32,#52,-0.9805,-0.15722,-0.11789,527.53,0.13116,-0.076866,-0.98838,462.03,0.14633,-0.98457,0.095988,415.95,#53,-0.97503,-0.18191,-0.12736,529.21,0.14613,-0.093756,-0.98481,462.33,0.1672,-0.97884,0.118,404.53,#54,-0.98291,-0.14194,-0.11723,519.55,0.13654,-0.13497,-0.9814,474.12,0.12348,-0.98063,0.15204,405.24,#55,-0.97135,-0.19517,-0.13562,536.18,0.14877,-0.054303,-0.98738,449.17,0.18535,-0.97926,0.081783,410.31,#56,-0.97788,-0.1518,-0.14388,525.51,0.16499,-0.13709,-0.97672,466.54,0.12854,-0.97886,0.15911,404.09,#57,-0.97666,-0.17864,-0.11925,526.78,0.14146,-0.11718,-0.98298,468.47,0.16162,-0.97691,0.13972,399.17
    2969 
    2970 > view matrix models
    2971 > #51,-0.97658,-0.16476,-0.13833,538.43,0.15235,-0.075648,-0.98543,454.9,0.15189,-0.98343,0.098977,403.7,#52,-0.9805,-0.15722,-0.11789,533.44,0.13116,-0.076866,-0.98838,461.07,0.14633,-0.98457,0.095988,405.33,#53,-0.97503,-0.18191,-0.12736,535.12,0.14613,-0.093756,-0.98481,461.36,0.1672,-0.97884,0.118,393.9,#54,-0.98291,-0.14194,-0.11723,525.46,0.13654,-0.13497,-0.9814,473.15,0.12348,-0.98063,0.15204,394.62,#55,-0.97135,-0.19517,-0.13562,542.1,0.14877,-0.054303,-0.98738,448.21,0.18535,-0.97926,0.081783,399.69,#56,-0.97788,-0.1518,-0.14388,531.42,0.16499,-0.13709,-0.97672,465.57,0.12854,-0.97886,0.15911,393.47,#57,-0.97666,-0.17864,-0.11925,532.69,0.14146,-0.11718,-0.98298,467.5,0.16162,-0.97691,0.13972,388.55
    2972 
    2973 > fitmap #51-57 inMap #50 eachModel true
    2974 
    2975 Fit map EMD-12059_PRE1.mrc in map Stable_60S.mrc using 92586 points 
    2976 correlation = 0.7934, correlation about mean = 0.2582, overlap = 4659 
    2977 steps = 100, shift = 12.8, angle = 12.4 degrees 
    2978  
    2979 Position of EMD-12059_PRE1.mrc (#51) relative to Stable_60S.mrc (#50)
    2980 coordinates: 
    2981 Matrix rotation and translation 
    2982 -0.98786089 0.05094722 -0.14674891 490.89502808 
    2983 0.14219287 -0.08380227 -0.98628514 453.72786211 
    2984 -0.06254637 -0.99517916 0.07554065 472.94563363 
    2985 Axis -0.07145020 -0.67644147 0.73302237 
    2986 Axis point 258.78938860 455.52119611 -0.00000000 
    2987 Rotation angle (degrees) 176.43164233 
    2988 Shift along axis 4.68483789 
    2989  
    2990 Fit map EMD-12061_PRE2.mrc in map Stable_60S.mrc using 92518 points 
    2991 correlation = 0.8163, correlation about mean = 0.2849, overlap = 4034 
    2992 steps = 100, shift = 12.9, angle = 12.4 degrees 
    2993  
    2994 Position of EMD-12061_PRE2.mrc (#52) relative to Stable_60S.mrc (#50)
    2995 coordinates: 
    2996 Matrix rotation and translation 
    2997 -0.99056686 0.05887950 -0.12373554 485.11040210 
    2998 0.11848848 -0.08553718 -0.98926430 460.65437686 
    2999 -0.06883138 -0.99459368 0.07775375 473.37015044 
    3000 Axis -0.06561948 -0.67602328 0.73395273 
    3001 Axis point 257.30260947 455.04779684 0.00000000 
    3002 Rotation angle (degrees) 177.67268248 
    3003 Shift along axis 4.18554103 
    3004  
    3005 Fit map EMD-12075_PRE3.mrc in map Stable_60S.mrc using 92602 points 
    3006 correlation = 0.8095, correlation about mean = 0.2276, overlap = 3836 
    3007 steps = 100, shift = 14, angle = 13.3 degrees 
    3008  
    3009 Position of EMD-12075_PRE3.mrc (#53) relative to Stable_60S.mrc (#50)
    3010 coordinates: 
    3011 Matrix rotation and translation 
    3012 -0.98927874 0.04910268 -0.13753726 489.96845321 
    3013 0.13318425 -0.08302087 -0.98760796 456.02314912 
    3014 -0.05991266 -0.99533736 0.07559107 471.94840052 
    3015 Axis -0.06739066 -0.67678919 0.73308587 
    3016 Axis point 257.69361734 455.46023553 0.00000000 
    3017 Rotation angle (degrees) 176.71241540 
    3018 Shift along axis 4.32786760 
    3019  
    3020 Fit map EMD-12065_PRE4.mrc in map Stable_60S.mrc using 92599 points 
    3021 correlation = 0.7801, correlation about mean = 0.2357, overlap = 5205 
    3022 steps = 104, shift = 16.3, angle = 15 degrees 
    3023  
    3024 Position of EMD-12065_PRE4.mrc (#54) relative to Stable_60S.mrc (#50)
    3025 coordinates: 
    3026 Matrix rotation and translation 
    3027 -0.98930920 0.10238972 -0.10384436 469.53910373 
    3028 0.09939131 -0.04768741 -0.99390506 457.11657850 
    3029 -0.10671773 -0.99360065 0.03700095 491.26988070 
    3030 Axis 0.07310473 0.69004033 -0.72006947 
    3031 Axis point 260.03995202 463.60986482 0.00000000 
    3032 Rotation angle (degrees) 179.88070824 
    3033 Shift along axis -3.99403992 
    3034  
    3035 Fit map EMD-12074_POST1.mrc in map Stable_60S.mrc using 92601 points 
    3036 correlation = 0.8475, correlation about mean = 0.3496, overlap = 3886 
    3037 steps = 128, shift = 10.2, angle = 14.2 degrees 
    3038  
    3039 Position of EMD-12074_POST1.mrc (#55) relative to Stable_60S.mrc (#50)
    3040 coordinates: 
    3041 Matrix rotation and translation 
    3042 -0.98936524 0.04994739 -0.13660774 489.62449946 
    3043 0.13206850 -0.08504625 -0.98758546 456.85981594 
    3044 -0.06094529 -0.99512431 0.07754533 471.81401672 
    3045 Axis -0.06736079 -0.67605584 0.73376497 
    3046 Axis point 257.69554811 455.13122069 0.00000000 
    3047 Rotation angle (degrees) 176.79212527 
    3048 Shift along axis 4.35635748 
    3049  
    3050 Fit map EMD-12062_POST2.mrc in map Stable_60S.mrc using 92597 points 
    3051 correlation = 0.788, correlation about mean = 0.2194, overlap = 4225 
    3052 steps = 100, shift = 14.3, angle = 11.9 degrees 
    3053  
    3054 Position of EMD-12062_POST2.mrc (#56) relative to Stable_60S.mrc (#50)
    3055 coordinates: 
    3056 Matrix rotation and translation 
    3057 -0.98929292 0.04835436 -0.13770027 490.23828165 
    3058 0.13330474 -0.08468269 -0.98745060 456.38859992 
    3059 -0.05940837 -0.99523399 0.07733012 471.44201648 
    3060 Axis -0.06722129 -0.67616821 0.73367421 
    3061 Axis point 257.64779039 455.12427442 0.00000000 
    3062 Rotation angle (degrees) 176.68107340 
    3063 Shift along axis 4.33493733 
    3064  
    3065 Fit map EMD-12064_POST3.mrc in map Stable_60S.mrc using 92531 points 
    3066 correlation = 0.7863, correlation about mean = 0.2108, overlap = 4146 
    3067 steps = 104, shift = 15, angle = 13.3 degrees 
    3068  
    3069 Position of EMD-12064_POST3.mrc (#57) relative to Stable_60S.mrc (#50)
    3070 coordinates: 
    3071 Matrix rotation and translation 
    3072 -0.98930940 0.04856746 -0.13750675 490.15396056 
    3073 0.13315352 -0.08370541 -0.98755432 456.20564631 
    3074 -0.05947306 -0.99530628 0.07634362 471.68880728 
    3075 Axis -0.06720756 -0.67653233 0.73333972 
    3076 Axis point 257.65674845 455.32829329 0.00000000 
    3077 Rotation angle (degrees) 176.69381433 
    3078 Shift along axis 4.32821991 
    3079  
    3080 
    3081 > select clear
    3082 
    3083 > show #!52 models
    3084 
    3085 > hide #!52 models
    3086 
    3087 > show #!52 models
    3088 
    3089 > hide #!52 models
    3090 
    3091 > show #!52 models
    3092 
    3093 > hide #!51 models
    3094 
    3095 > show #!51 models
    3096 
    3097 > hide #!52 models
    3098 
    3099 > hide #!51 models
    3100 
    3101 > ui tool show "Side View"
    3102 
    3103 > show #!51 models
    3104 
    3105 > show #!52 models
    3106 
    3107 > show #!53 models
    3108 
    3109 > show #!54 models
    3110 
    3111 > show #!55 models
    3112 
    3113 > show #!56 models
    3114 
    3115 > show #!57 models
    3116 
    3117 > show #!58 models
    3118 
    3119 > show #!59 models
    3120 
    3121 > show #!60 models
    3122 
    3123 > hide #!60 models
    3124 
    3125 > hide #!59 models
    3126 
    3127 > hide #!58 models
    3128 
    3129 > hide #!57 models
    3130 
    3131 > hide #!56 models
    3132 
    3133 > hide #!55 models
    3134 
    3135 > hide #!54 models
    3136 
    3137 > hide #!53 models
    3138 
    3139 > hide #!52 models
    3140 
    3141 > hide #!51 models
    3142 
    3143 > save
    3144 > /Users/campbell/Desktop/Chimera_sessions/Conformationassignment/RotationPDBsandEMDBsCombined.cxs
    3145 > includeMaps true
    3146 
    3147 ——— End of log from Thu Aug 8 12:51:05 2024 ———
    3148 
    3149 opened ChimeraX session 
    3150 
    3151 > open
    3152 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/1/MultiPostProcessor_PPout_1.mrc
    3153 
    3154 Opened MultiPostProcessor_PPout_1.mrc as #1, grid size 128,128,128, pixel 4,
    3155 shown at level 0.879, step 1, values float32 
    3156 
    3157 > open
    3158 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/2/MultiPostProcessor_PPout_2.mrc
    3159 
    3160 Opened MultiPostProcessor_PPout_2.mrc as #2, grid size 128,128,128, pixel 4,
    3161 shown at level 0.805, step 1, values float32 
    3162 
    3163 > open
    3164 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/3/MultiPostProcessor_PPout_3.mrc
    3165 
    3166 Opened MultiPostProcessor_PPout_3.mrc as #3, grid size 128,128,128, pixel 4,
    3167 shown at level 0.833, step 1, values float32 
    3168 
    3169 > open
    3170 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/4/MultiPostProcessor_PPout_4.mrc
    3171 
    3172 Opened MultiPostProcessor_PPout_4.mrc as #4, grid size 128,128,128, pixel 4,
    3173 shown at level 0.963, step 1, values float32 
    3174 
    3175 > open
    3176 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/5/MultiPostProcessor_PPout_5.mrc
    3177 
    3178 Opened MultiPostProcessor_PPout_5.mrc as #5, grid size 128,128,128, pixel 4,
    3179 shown at level 0.857, step 1, values float32 
    3180 
    3181 > open
    3182 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/6/MultiPostProcessor_PPout_6.mrc
    3183 
    3184 Opened MultiPostProcessor_PPout_6.mrc as #6, grid size 128,128,128, pixel 4,
    3185 shown at level 0.868, step 1, values float32 
    3186 
    3187 > open
    3188 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/7/MultiPostProcessor_PPout_7.mrc
    3189 
    3190 Opened MultiPostProcessor_PPout_7.mrc as #7, grid size 128,128,128, pixel 4,
    3191 shown at level 0.925, step 1, values float32 
    3192 
    3193 > open
    3194 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/8/MultiPostProcessor_PPout_8.mrc
    3195 
    3196 Opened MultiPostProcessor_PPout_8.mrc as #8, grid size 128,128,128, pixel 4,
    3197 shown at level 0.79, step 1, values float32 
    3198 
    3199 > open
    3200 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/9/MultiPostProcessor_PPout_9.mrc
    3201 
    3202 Opened MultiPostProcessor_PPout_9.mrc as #9, grid size 128,128,128, pixel 4,
    3203 shown at level 0.95, step 1, values float32 
    3204 
    3205 > open
    3206 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/10/MultiPostProcessor_PPout_10.mrc
    3207 
    3208 Opened MultiPostProcessor_PPout_10.mrc as #10, grid size 128,128,128, pixel 4,
    3209 shown at level 0.919, step 1, values float32 
    3210 
    3211 > fitmap #1-10 inMap #50 eachModel true
    3212 
    3213 Fit map MultiPostProcessor_PPout_1.mrc in map Stable_60S.mrc using 20970
    3214 points 
    3215 correlation = 0.8232, correlation about mean = 0.2383, overlap = 1.52e+04 
    3216 steps = 148, shift = 2.3, angle = 0.99 degrees 
    3217  
    3218 Position of MultiPostProcessor_PPout_1.mrc (#1) relative to Stable_60S.mrc
    3219 (#50) coordinates: 
    3220 Matrix rotation and translation 
    3221 0.99985148 0.01689255 0.00341564 -3.33682583 
    3222 -0.01689673 0.99985652 0.00119912 5.01446636 
    3223 -0.00339490 -0.00125666 0.99999345 2.30605403 
    3224 Axis -0.07106625 0.19708606 -0.97780707 
    3225 Axis point 307.04216643 204.56292077 0.00000000 
    3226 Rotation angle (degrees) 0.99001079 
    3227 Shift along axis -1.02945885 
    3228  
    3229 Fit map MultiPostProcessor_PPout_2.mrc in map Stable_60S.mrc using 20950
    3230 points 
    3231 correlation = 0.8495, correlation about mean = 0.2183, overlap = 1.345e+04 
    3232 steps = 108, shift = 1.59, angle = 0.735 degrees 
    3233  
    3234 Position of MultiPostProcessor_PPout_2.mrc (#2) relative to Stable_60S.mrc
    3235 (#50) coordinates: 
    3236 Matrix rotation and translation 
    3237 0.99999599 0.00218027 -0.00180747 0.40692268 
    3238 -0.00220269 0.99991944 -0.01250056 2.06700721 
    3239 0.00178007 0.01250449 0.99992023 -3.14881641 
    3240 Axis 0.97529261 -0.13992746 -0.17095211 
    3241 Axis point 0.00000000 244.07494933 171.01055041 
    3242 Rotation angle (degrees) 0.73450957 
    3243 Shift along axis 0.64593444 
    3244  
    3245 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 20949
    3246 points 
    3247 correlation = 0.8113, correlation about mean = 0.1368, overlap = 1.3e+04 
    3248 steps = 60, shift = 1.2, angle = 0.081 degrees 
    3249  
    3250 Position of MultiPostProcessor_PPout_3.mrc (#3) relative to Stable_60S.mrc
    3251 (#50) coordinates: 
    3252 Matrix rotation and translation 
    3253 0.99999928 0.00119593 0.00000657 0.09698330 
    3254 -0.00119593 0.99999900 0.00075424 0.73224955 
    3255 -0.00000567 -0.00075425 0.99999972 1.14099446 
    3256 Axis -0.53344196 0.00433064 -0.84582559 
    3257 Axis point 615.64347975 371.40899032 0.00000000 
    3258 Rotation angle (degrees) 0.08101171 
    3259 Shift along axis -1.01364616 
    3260  
    3261 Fit map MultiPostProcessor_PPout_4.mrc in map Stable_60S.mrc using 20960
    3262 points 
    3263 correlation = 0.8188, correlation about mean = 0.2091, overlap = 1.682e+04 
    3264 steps = 116, shift = 2.6, angle = 0.312 degrees 
    3265  
    3266 Position of MultiPostProcessor_PPout_4.mrc (#4) relative to Stable_60S.mrc
    3267 (#50) coordinates: 
    3268 Matrix rotation and translation 
    3269 0.99998550 -0.00421016 -0.00335633 3.25936117 
    3270 0.00420754 0.99999084 -0.00078891 0.76712387 
    3271 0.00335962 0.00077477 0.99999406 0.48707566 
    3272 Axis 0.14370120 -0.61719106 0.77357945 
    3273 Axis point -235.18549940 762.28815719 0.00000000 
    3274 Rotation angle (degrees) 0.31173326 
    3275 Shift along axis 0.37170384 
    3276  
    3277 Fit map MultiPostProcessor_PPout_5.mrc in map Stable_60S.mrc using 20966
    3278 points 
    3279 correlation = 0.818, correlation about mean = 0.2113, overlap = 1.441e+04 
    3280 steps = 68, shift = 2.65, angle = 0.436 degrees 
    3281  
    3282 Position of MultiPostProcessor_PPout_5.mrc (#5) relative to Stable_60S.mrc
    3283 (#50) coordinates: 
    3284 Matrix rotation and translation 
    3285 0.99999041 0.00260182 0.00352261 0.01486523 
    3286 -0.00262368 0.99997723 0.00621766 0.98420510 
    3287 -0.00350635 -0.00622684 0.99997447 3.51546630 
    3288 Axis -0.81776603 0.46189442 -0.34338356 
    3289 Axis point 0.00000000 523.27015458 -213.18390223 
    3290 Rotation angle (degrees) 0.43595863 
    3291 Shift along axis -0.76471077 
    3292  
    3293 Fit map MultiPostProcessor_PPout_6.mrc in map Stable_60S.mrc using 20958
    3294 points 
    3295 correlation = 0.8227, correlation about mean = 0.2461, overlap = 1.506e+04 
    3296 steps = 84, shift = 2.21, angle = 1.05 degrees 
    3297  
    3298 Position of MultiPostProcessor_PPout_6.mrc (#6) relative to Stable_60S.mrc
    3299 (#50) coordinates: 
    3300 Matrix rotation and translation 
    3301 0.99989672 -0.00490389 -0.01350962 5.54445758 
    3302 0.00474986 0.99992362 -0.01140997 2.86381998 
    3303 0.01356454 0.01134462 0.99984364 -4.47863636 
    3304 Axis 0.62068782 -0.73851477 0.26332978 
    3305 Axis point 337.65012800 0.00000000 401.07076604 
    3306 Rotation angle (degrees) 1.05029872 
    3307 Shift along axis 0.14704558 
    3308  
    3309 Fit map MultiPostProcessor_PPout_7.mrc in map Stable_60S.mrc using 20961
    3310 points 
    3311 correlation = 0.8125, correlation about mean = 0.2052, overlap = 1.615e+04 
    3312 steps = 120, shift = 2.42, angle = 1.07 degrees 
    3313  
    3314 Position of MultiPostProcessor_PPout_7.mrc (#7) relative to Stable_60S.mrc
    3315 (#50) coordinates: 
    3316 Matrix rotation and translation 
    3317 0.99982781 0.01829639 0.00309618 -3.59801598 
    3318 -0.01830028 0.99983178 0.00123302 5.36311958 
    3319 -0.00307310 -0.00128946 0.99999445 2.45369240 
    3320 Axis -0.06781110 0.16584717 -0.98381725 
    3321 Axis point 302.78964134 204.24728861 0.00000000 
    3322 Rotation angle (degrees) 1.06572399 
    3323 Shift along axis -1.28054129 
    3324  
    3325 Fit map MultiPostProcessor_PPout_8.mrc in map Stable_60S.mrc using 20955
    3326 points 
    3327 correlation = 0.829, correlation about mean = 0.2004, overlap = 1.263e+04 
    3328 steps = 68, shift = 1.88, angle = 0.37 degrees 
    3329  
    3330 Position of MultiPostProcessor_PPout_8.mrc (#8) relative to Stable_60S.mrc
    3331 (#50) coordinates: 
    3332 Matrix rotation and translation 
    3333 0.99999659 -0.00080404 -0.00248558 1.25940033 
    3334 0.00081871 0.99998223 0.00590518 0.20456388 
    3335 0.00248079 -0.00590720 0.99997948 0.88248004 
    3336 Axis -0.91453356 -0.38450487 0.12563583 
    3337 Axis point 0.00000000 173.06679830 38.77671696 
    3338 Rotation angle (degrees) 0.37002694 
    3339 Shift along axis -1.11954857 
    3340  
    3341 Fit map MultiPostProcessor_PPout_9.mrc in map Stable_60S.mrc using 20956
    3342 points 
    3343 correlation = 0.822, correlation about mean = 0.2167, overlap = 1.676e+04 
    3344 steps = 116, shift = 2.48, angle = 0.549 degrees 
    3345  
    3346 Position of MultiPostProcessor_PPout_9.mrc (#9) relative to Stable_60S.mrc
    3347 (#50) coordinates: 
    3348 Matrix rotation and translation 
    3349 0.99996878 -0.00512299 -0.00601608 4.12513152 
    3350 0.00509034 0.99997230 -0.00543084 1.50305801 
    3351 0.00604374 0.00540004 0.99996716 -1.28279790 
    3352 Axis 0.56532163 -0.62946664 0.53308836 
    3353 Axis point 277.53729146 0.00000000 618.27260090 
    3354 Rotation angle (degrees) 0.54886738 
    3355 Shift along axis 0.70205658 
    3356  
    3357 Fit map MultiPostProcessor_PPout_10.mrc in map Stable_60S.mrc using 20951
    3358 points 
    3359 correlation = 0.8153, correlation about mean = 0.1922, overlap = 1.604e+04 
    3360 steps = 68, shift = 3.11, angle = 0.58 degrees 
    3361  
    3362 Position of MultiPostProcessor_PPout_10.mrc (#10) relative to Stable_60S.mrc
    3363 (#50) coordinates: 
    3364 Matrix rotation and translation 
    3365 0.99998664 -0.00166387 0.00489427 1.02886494 
    3366 0.00162118 0.99996072 0.00871367 -0.34077179 
    3367 -0.00490858 -0.00870562 0.99995006 4.65054117 
    3368 Axis -0.85994281 0.48394006 0.16217391 
    3369 Axis point 0.00000000 539.56003047 25.12943779 
    3370 Rotation angle (degrees) 0.58031133 
    3371 Shift along axis -0.29548171 
    3372  
    3373 
    3374 > hide #!50 models
    3375 
    3376 > show #!50 models
    3377 
    3378 > hide #!50 models
    3379 
    3380 > show #!50 models
    3381 
    3382 > hide #!50 models
    3383 
    3384 > show #!50 models
    3385 
    3386 > hide #!50 models
    3387 
    3388 > volume #1-10 level 0.77
    3389 
    3390 > hide #!2 models
    3391 
    3392 > hide #!3 models
    3393 
    3394 > hide #!4 models
    3395 
    3396 > hide #!5 models
    3397 
    3398 > hide #!6 models
    3399 
    3400 > hide #!7 models
    3401 
    3402 > hide #!8 models
    3403 
    3404 > hide #!9 models
    3405 
    3406 > hide #!10 models
    3407 
    3408 > volume #1 level 0.5499
    3409 
    3410 > volume #1 level 0.493
    3411 
    3412 > volume #1 level 0.7396
    3413 
    3414 > show #!58 models
    3415 
    3416 > volume #1 level 0.4247
    3417 
    3418 > volume #1 color #b2b2b295
    3419 
    3420 > show #!59 models
    3421 
    3422 > show #!60 models
    3423 
    3424 > hide atoms
    3425 
    3426 > show cartoons
    3427 
    3428 > hide #!59 models
    3429 
    3430 > hide #!60 models
    3431 
    3432 > show #!59 models
    3433 
    3434 > show #!60 models
    3435 
    3436 > hide #!1 models
    3437 
    3438 > color bychain
    3439 
    3440 > color bypolymer
    3441 
    3442 [Repeated 1 time(s)]
    3443 
    3444 > color bychain
    3445 
    3446 > hide #!60 models
    3447 
    3448 > show #!60 models
    3449 
    3450 > hide #!60 models
    3451 
    3452 > hide #!59 models
    3453 
    3454 > show #!59 models
    3455 
    3456 > show #!60 models
    3457 
    3458 > color bychain
    3459 
    3460 > color bypolymer
    3461 
    3462 > color bychain
    3463 
    3464 > hide #!60 models
    3465 
    3466 > show #!60 models
    3467 
    3468 > hide #!59 models
    3469 
    3470 > color #!58,60 bypolymer
    3471 
    3472 > color #!58,60 bychain
    3473 
    3474 > hide #!58 models
    3475 
    3476 > hide #!60 models
    3477 
    3478 > show #!59 models
    3479 
    3480 > color #!59 bypolymer
    3481 
    3482 > show #!58 models
    3483 
    3484 > show #!60 models
    3485 
    3486 > close #1-10
    3487 
    3488 > hide #!59 models
    3489 
    3490 > hide #!60 models
    3491 
    3492 > select #58/1S:1222
    3493 
    3494 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3495 
    3496 > select up
    3497 
    3498 37949 atoms, 42445 bonds, 1781 residues, 1 model selected 
    3499 
    3500 > select up
    3501 
    3502 209136 atoms, 224719 bonds, 17082 residues, 1 model selected 
    3503 
    3504 > select down
    3505 
    3506 37949 atoms, 42445 bonds, 1781 residues, 1 model selected 
    3507 
    3508 > color sel cornflower blue
    3509 
    3510 > hide #!58 models
    3511 
    3512 > show #!59 models
    3513 
    3514 > select #59/1S:1222
    3515 
    3516 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3517 
    3518 > select up
    3519 
    3520 37949 atoms, 42445 bonds, 1781 residues, 1 model selected 
    3521 
    3522 > color sel orange red
    3523 
    3524 > hide #!59 models
    3525 
    3526 > show #!60 models
    3527 
    3528 > show #!59 models
    3529 
    3530 > color sel #ffc7beff
    3531 
    3532 > color sel #ffcb92ff
    3533 
    3534 > color sel #ff9095ff
    3535 
    3536 > color sel #ff7c88ff
    3537 
    3538 > hide #!59 models
    3539 
    3540 > select #60/18S:1217
    3541 
    3542 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3543 
    3544 > select up
    3545 
    3546 36918 atoms, 41291 bonds, 1732 residues, 1 model selected 
    3547 
    3548 > color sel #ffe39dff
    3549 
    3550 > color sel #fbff94ff
    3551 
    3552 > select clear
    3553 
    3554 > show #!59 models
    3555 
    3556 > show #!58 models
    3557 
    3558 > show #!50 models
    3559 
    3560 > hide #!58 models
    3561 
    3562 > hide #!59 models
    3563 
    3564 > hide #!60 models
    3565 
    3566 > save
    3567 > /Users/campbell/Desktop/Chimera_sessions/Conformationassignment/RotationPDBsandEMDBsCombined.cxs
    3568 > includeMaps true
    3569 
    3570 ——— End of log from Thu Aug 8 13:05:51 2024 ———
    3571 
    3572 opened ChimeraX session 
    3573 
    3574 > open 7osa
    3575 
    3576 7osa title: 
    3577 Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
    3578 [more info...] 
    3579  
    3580 Chain information for 7osa #1 
    3581 --- 
    3582 Chain | Description | UniProt 
    3583 18S | 18S rRNA |   
    3584 25S | 25S rRNA |   
    3585 58S | 5.8S rRNA |   
    3586 AB | 5S |   
    3587 PSIT | Psite tRNA-Phe |   
    3588 RACK | BJ4_G0022010.mRNA.1.CDS.1 | A0A6L1BKH8_YEASX 1-319 
    3589 eEF2 | Elongation factor 2 | A0A6A5Q7K2_YEASX 1-842 
    3590 eL13 | 60S ribosomal protein L13 | A0A6L1AF71_YEASX 1-199 
    3591 eL14 | 60S ribosomal protein L14-A | RL14A_YEAST 1-138 
    3592 eL15 | 60S ribosomal protein L15-A | RL15A_YEAST 1-204 
    3593 eL18 | BJ4_G0033900.mRNA.1.CDS.1 | A0A6L1A7F6_YEASX 1-186 
    3594 eL19 | 60S ribosomal protein L19-A | RL19A_YEAST 1-189 
    3595 eL20 | 60S ribosomal protein L20 | A0A6V8RR03_YEASX 1-172 
    3596 eL21 | BJ4_G0003770.mRNA.1.CDS.1 | A0A6L0YTI6_YEASX 1-160 
    3597 eL22 | 60S ribosomal protein L22-A | A0A6L0ZZW6_YEASX 1-121 
    3598 eL24 | 60S ribosomal protein L24-A | A0A6A5PY83_YEASX 1-155 
    3599 eL27 | 60S ribosomal protein L27 | A0A6L0ZQQ7_YEASX 2-136 
    3600 eL29 | 60S ribosomal protein L29 | A0A6A5PWR1_YEASX 1-59 
    3601 eL30 | BJ4_G0020000.mRNA.1.CDS.1 | A0A6L0ZM08_YEASX 1-105 
    3602 eL31 | BJ4_G0008090.mRNA.1.CDS.1 | A0A6L0YFR2_YEASX 1-113 
    3603 eL32 | HN1_G0013350.mRNA.1.CDS.1 | A0A7I9CD28_YEASX 1-130 
    3604 eL33 | BJ4_G0025510.mRNA.1.CDS.1 | A0A6L1C3H0_YEASX 1-107 
    3605 eL34 | 60S ribosomal protein L34-A | A0A6L0ZFW3_YEASX 1-121 
    3606 eL36 | 60S ribosomal protein L36-A | RL36A_YEAST 1-100 
    3607 eL37 | Ribosomal protein L37 | A0A6L1BIE7_YEASX 1-88 
    3608 eL38 | BJ4_G0032190.mRNA.1.CDS.1 | A0A6A5PUL8_YEASX 1-78 
    3609 eL39 | 60S ribosomal protein L39 | A0A6L1ASX0_YEASX 1-51 
    3610 eL40 | Ubiquitin | A0A6V8S9K0_YEASX 1-128 
    3611 eL41 | eL41 |   
    3612 eL42 | BJ4_G0001880.mRNA.1.CDS.1 | A0A6L1B5X0_YEASX 1-106 
    3613 eL43 | 60S ribosomal protein L43-A | RL43A_YEAST 1-92 
    3614 eL6 | 60S ribosomal protein L6 | A0A6L1BLT3_YEASX 1-176 
    3615 eL8 | 60S ribosomal protein L8-A | RL8A_YEAST 1-256 
    3616 eS1 | 40S ribosomal protein S1 | A0A6A5PRY4_YEASX 1-255 
    3617 eS10 | 40S ribosomal protein S10-A | A0A6L0ZM59_YEASX 1-105 
    3618 eS12 | 40S ribosomal protein S12 | A0A6A5Q8I3_YEASX 1-143 
    3619 eS17 | BJ4_G0020710.mRNA.1.CDS.1 | A0A6L1BLL7_YEASX 1-136 
    3620 eS19 | 40S ribosomal protein S19-A | A0A6L1BWT3_YEASX 1-144 
    3621 eS21 | 40S ribosomal protein S21 | A0A6L1BDN3_YEASX 1-87 
    3622 eS24 | 40S ribosomal protein S24 | A0A6L1AUB6_YEASX 1-135 
    3623 eS25 | 40S ribosomal protein S25 | A0A6A5PZ18_YEASX 1-108 
    3624 eS26 | 40S ribosomal protein S26 | A0A6A5PUG0_YEASX 1-119 
    3625 eS27 | 40S ribosomal protein S27-A | RS27A_YEAST 1-82 
    3626 eS28 | eS28 | A0A6A5Q700_YEASX 1-67 
    3627 eS30 | 40S ribosomal protein S30 | A0A6L1A1E1_YEASX 1-63 
    3628 eS31 | Ubiquitin-40S ribosomal protein S31 | A0A6A5PU37_YEASX 1-152 
    3629 eS4 | 40S ribosomal protein S4 | A0A6L0Z3Q0_YEASX 1-261 
    3630 eS6 | 40S ribosomal protein S6 | A0A6L1AMY1_YEASX 1-236 
    3631 eS7 | 40S ribosomal protein S7 | A0A6L1ACT7_YEASX 1-190 
    3632 eS8 | 40S ribosomal protein S8 | A0A6A5Q1H1_YEASX 1-200 
    3633 mRNA | MRNA |   
    3634 uL10 | 60S acidic ribosomal protein P0 | A0A6A5PT43_YEASX 1-312 
    3635 uL11 | 60S ribosomal protein L12-B | A0A6A5Q275_YEASX 1-165 
    3636 uL13 | 60S ribosomal protein L16-A | A0A6L0ZD57_YEASX 1-199 
    3637 uL14 | 60S ribosomal protein L23-B | A0A6L0Z7E4_YEASX 1-137 
    3638 uL15 | 60S ribosomal protein L28 | A0A6L0ZDK5_YEASX 1-149 
    3639 uL16 | 60S ribosomal protein L10 | A0A6A5PUZ5_YEASX 1-221 
    3640 uL18 | 60S ribosomal protein L5 | A0A6A5Q0W8_YEASX 1-297 
    3641 uL2 | 60S ribosomal protein L2-B | A0A6L0Y8L2_YEASX 1-254 
    3642 uL22 | BJ4_G0005750.mRNA.1.CDS.1 | A0A6L1BCL1_YEASX 1-184 
    3643 uL23 | 60S ribosomal protein L25 | A0A6L0YSM0_YEASX 1-142 
    3644 uL24 | 60S ribosomal protein L26-A | RL26A_YEAST 1-127 
    3645 uL29 | BJ4_G0044250.mRNA.1.CDS.1 | A0A7I9BRN0_YEASX 1-120 
    3646 uL3 | 60S ribosomal protein L3 | A0A6A5Q627_YEASX 1-387 
    3647 uL30 | 60S ribosomal protein L7-A | RL7A_YEAST 1-244 
    3648 uL4 | BJ4_G0008850.mRNA.1.CDS.1 | A0A6A5Q3W0_YEASX 1-362 
    3649 uL5 | BJ4_G0027750.mRNA.1.CDS.1 | A0A6A5Q7I9_YEASX 1-174 
    3650 uL6 | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    3651 uS10 | 40S ribosomal protein S20 | A0A6A5PVE9_YEASX 1-121 
    3652 uS11 | 40S ribosomal protein S14-A | A0A6L1AAG7_YEASX 1-137 
    3653 uS12 | 40S ribosomal protein S23 | A0A6L1B1T2_YEASX 1-145 
    3654 uS13 | 40S ribosomal protein S18-B | A0A6L1AIT6_YEASX 1-146 
    3655 uS14 | HLJ1_G0030400.mRNA.1.CDS.1 | A0A6A5PV92_YEASX 1-56 
    3656 uS15 | 40S ribosomal protein S13 | A0A6L0YFM5_YEASX 1-151 
    3657 uS17 | 40S ribosomal protein S11-B | A0A6L0YMX6_YEASX 1-156 
    3658 uS19 | 40S ribosomal protein S15 | A0A6A5Q6F2_YEASX 1-142 
    3659 uS2 | 40S ribosomal protein S0 | A0A6L0ZRP4_YEASX 1-252 
    3660 uS3 | BJ4_G0045400.mRNA.1.CDS.1 | A0A6L0ZVK6_YEASX 1-240 
    3661 uS4 | BJ4_G0026100.mRNA.1.CDS.1 | A0A7I9GPQ3_YEASX 1-197 
    3662 uS5 | 40S ribosomal protein S2 | A0A6A5PWF7_YEASX 1-254 
    3663 uS7 | Rps5p | A0A1L4AA68_YEASX 1-225 
    3664 uS8 | 40S ribosomal protein S22-A | A0A6A5PSE9_YEASX 1-130 
    3665 uS9 | BJ4_G0008010.mRNA.1.CDS.1 | A0A6L0YQ58_YEASX 1-143 
    3666  
    3667 Non-standard residues in 7osa #1 
    3668 --- 
    3669 GTP — guanosine-5'-triphosphate 
    3670 MG — magnesium ion 
    3671 ZN — zinc ion 
    3672  
    3673 5 atoms have alternate locations. Control/examine alternate locations with
    3674 Altloc Explorer [start tool...] or the altlocs command. 
    3675 
    3676 > select #1/eS26:96@CB
    3677 
    3678 1 atom, 1 residue, 1 model selected 
    3679 
    3680 > select #1/eS1:147@O
    3681 
    3682 1 atom, 1 residue, 1 model selected 
    3683 
    3684 > ui mousemode right "translate selected models"
    3685 
    3686 > view matrix models #1,1,0,0,97.06,0,1,0,-68.834,0,0,1,94.457
    3687 
    3688 > view matrix models #1,1,0,0,125.71,0,1,0,-83.844,0,0,1,133.76
    3689 
    3690 > view matrix models
    3691 > #1,-0.70441,-0.70086,0.11225,9.1273,0.60532,-0.67576,-0.42064,-21.473,0.37067,-0.22836,0.90025,163.27
    3692 
    3693 > view matrix models
    3694 > #1,-0.70669,-0.63072,0.3206,-3.4427,0.54815,-0.77457,-0.31555,-31.532,0.44735,-0.047264,0.89311,168.78
    3695 
    3696 > show #!58 models
    3697 
    3698 > hide #!58 models
    3699 
    3700 > view matrix models
    3701 > #1,-0.70669,-0.63072,0.3206,278.62,0.54815,-0.77457,-0.31555,133.5,0.44735,-0.047264,0.89311,127.99
    3702 
    3703 > view matrix models
    3704 > #1,-0.70669,-0.63072,0.3206,173.05,0.54815,-0.77457,-0.31555,295.8,0.44735,-0.047264,0.89311,236.76
    3705 
    3706 > fitmap #1 inMap #50
    3707 
    3708 Fit molecule 7osa (#1) to map Stable_60S.mrc (#50) using 208051 atoms 
    3709 average map value = 0.541, steps = 168 
    3710 shifted from previous position = 11.5 
    3711 rotated from previous position = 20.1 degrees 
    3712 atoms outside contour = 121624, contour level = 0.78541 
    3713  
    3714 Position of 7osa (#1) relative to Stable_60S.mrc (#50) coordinates: 
    3715 Matrix rotation and translation 
    3716 -0.72595319 -0.45266848 0.51776754 167.80645740 
    3717 0.25751860 -0.87699407 -0.40566683 280.60432310 
    3718 0.63771165 -0.16116036 0.75322719 247.50008222 
    3719 Axis 0.32145878 -0.15769352 0.93370071 
    3720 Axis point 7.59184166 170.76745427 0.00000000 
    3721 Rotation angle (degrees) 157.64725856 
    3722 Shift along axis 240.78437813 
    3723  
    3724 
    3725 > show sel cartoons
    3726 
    3727 > hide sel atoms
    3728 
    3729 [Repeated 1 time(s)]
    3730 
    3731 > show sel cartoons
    3732 
    3733 > select clear
    3734 
    3735 > hide #!1 atoms
    3736 
    3737 > show #!1 cartoons
    3738 
    3739 > show #!58 models
    3740 
    3741 > hide #!58 models
    3742 
    3743 > show #!58 models
    3744 
    3745 > show #!59 models
    3746 
    3747 > show #!60 models
    3748 
    3749 > hide #!60 models
    3750 
    3751 > hide #!59 models
    3752 
    3753 > hide #!58 models
    3754 
    3755 > rename #60 id #61
    3756 
    3757 > rename #1 id #60
    3758 
    3759 > hide #!60 models
    3760 
    3761 > save
    3762 > /Users/campbell/Desktop/Chimera_sessions/Conformationassignment/RotationPDBsandEMDBsCombined.cxs
    3763 > includeMaps true
    3764 
    3765 > open
    3766 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/1/MultiPostProcessor_PPout_1.mrc
    3767 
    3768 Opened MultiPostProcessor_PPout_1.mrc as #1, grid size 128,128,128, pixel 4,
    3769 shown at level 0.879, step 1, values float32 
    3770 
    3771 > open
    3772 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/2/MultiPostProcessor_PPout_2.mrc
    3773 
    3774 Opened MultiPostProcessor_PPout_2.mrc as #2, grid size 128,128,128, pixel 4,
    3775 shown at level 0.805, step 1, values float32 
    3776 
    3777 > open
    3778 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/3/MultiPostProcessor_PPout_3.mrc
    3779 
    3780 Opened MultiPostProcessor_PPout_3.mrc as #3, grid size 128,128,128, pixel 4,
    3781 shown at level 0.833, step 1, values float32 
    3782 
    3783 > open
    3784 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/4/MultiPostProcessor_PPout_4.mrc
    3785 
    3786 Opened MultiPostProcessor_PPout_4.mrc as #4, grid size 128,128,128, pixel 4,
    3787 shown at level 0.963, step 1, values float32 
    3788 
    3789 > open
    3790 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/5/MultiPostProcessor_PPout_5.mrc
    3791 
    3792 Opened MultiPostProcessor_PPout_5.mrc as #5, grid size 128,128,128, pixel 4,
    3793 shown at level 0.857, step 1, values float32 
    3794 
    3795 > open
    3796 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/6/MultiPostProcessor_PPout_6.mrc
    3797 
    3798 Opened MultiPostProcessor_PPout_6.mrc as #6, grid size 128,128,128, pixel 4,
    3799 shown at level 0.868, step 1, values float32 
    3800 
    3801 > open
    3802 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/7/MultiPostProcessor_PPout_7.mrc
    3803 
    3804 Opened MultiPostProcessor_PPout_7.mrc as #7, grid size 128,128,128, pixel 4,
    3805 shown at level 0.925, step 1, values float32 
    3806 
    3807 > open
    3808 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/8/MultiPostProcessor_PPout_8.mrc
    3809 
    3810 Opened MultiPostProcessor_PPout_8.mrc as #8, grid size 128,128,128, pixel 4,
    3811 shown at level 0.79, step 1, values float32 
    3812 
    3813 > open
    3814 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/9/MultiPostProcessor_PPout_9.mrc
    3815 
    3816 Opened MultiPostProcessor_PPout_9.mrc as #9, grid size 128,128,128, pixel 4,
    3817 shown at level 0.95, step 1, values float32 
    3818 
    3819 > open
    3820 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/1_tRNA_T6/10/MultiPostProcessor_PPout_10.mrc
    3821 
    3822 Opened MultiPostProcessor_PPout_10.mrc as #10, grid size 128,128,128, pixel 4,
    3823 shown at level 0.919, step 1, values float32 
    3824 
    3825 > fitmap #1-10 inMap #50 eachModel true
    3826 
    3827 Fit map MultiPostProcessor_PPout_1.mrc in map Stable_60S.mrc using 20970
    3828 points 
    3829 correlation = 0.8232, correlation about mean = 0.2383, overlap = 1.52e+04 
    3830 steps = 148, shift = 2.3, angle = 0.99 degrees 
    3831  
    3832 Position of MultiPostProcessor_PPout_1.mrc (#1) relative to Stable_60S.mrc
    3833 (#50) coordinates: 
    3834 Matrix rotation and translation 
    3835 0.99985148 0.01689255 0.00341564 -3.33682583 
    3836 -0.01689673 0.99985652 0.00119912 5.01446636 
    3837 -0.00339490 -0.00125666 0.99999345 2.30605403 
    3838 Axis -0.07106625 0.19708606 -0.97780707 
    3839 Axis point 307.04216643 204.56292077 0.00000000 
    3840 Rotation angle (degrees) 0.99001079 
    3841 Shift along axis -1.02945885 
    3842  
    3843 Fit map MultiPostProcessor_PPout_2.mrc in map Stable_60S.mrc using 20950
    3844 points 
    3845 correlation = 0.8495, correlation about mean = 0.2183, overlap = 1.345e+04 
    3846 steps = 108, shift = 1.59, angle = 0.735 degrees 
    3847  
    3848 Position of MultiPostProcessor_PPout_2.mrc (#2) relative to Stable_60S.mrc
    3849 (#50) coordinates: 
    3850 Matrix rotation and translation 
    3851 0.99999599 0.00218027 -0.00180747 0.40692268 
    3852 -0.00220269 0.99991944 -0.01250056 2.06700721 
    3853 0.00178007 0.01250449 0.99992023 -3.14881641 
    3854 Axis 0.97529261 -0.13992746 -0.17095211 
    3855 Axis point 0.00000000 244.07494933 171.01055041 
    3856 Rotation angle (degrees) 0.73450957 
    3857 Shift along axis 0.64593444 
    3858  
    3859 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 20949
    3860 points 
    3861 correlation = 0.8113, correlation about mean = 0.1368, overlap = 1.3e+04 
    3862 steps = 60, shift = 1.2, angle = 0.081 degrees 
    3863  
    3864 Position of MultiPostProcessor_PPout_3.mrc (#3) relative to Stable_60S.mrc
    3865 (#50) coordinates: 
    3866 Matrix rotation and translation 
    3867 0.99999928 0.00119593 0.00000657 0.09698330 
    3868 -0.00119593 0.99999900 0.00075424 0.73224955 
    3869 -0.00000567 -0.00075425 0.99999972 1.14099446 
    3870 Axis -0.53344196 0.00433064 -0.84582559 
    3871 Axis point 615.64347975 371.40899032 0.00000000 
    3872 Rotation angle (degrees) 0.08101171 
    3873 Shift along axis -1.01364616 
    3874  
    3875 Fit map MultiPostProcessor_PPout_4.mrc in map Stable_60S.mrc using 20960
    3876 points 
    3877 correlation = 0.8188, correlation about mean = 0.2091, overlap = 1.682e+04 
    3878 steps = 116, shift = 2.6, angle = 0.312 degrees 
    3879  
    3880 Position of MultiPostProcessor_PPout_4.mrc (#4) relative to Stable_60S.mrc
    3881 (#50) coordinates: 
    3882 Matrix rotation and translation 
    3883 0.99998550 -0.00421016 -0.00335633 3.25936117 
    3884 0.00420754 0.99999084 -0.00078891 0.76712387 
    3885 0.00335962 0.00077477 0.99999406 0.48707566 
    3886 Axis 0.14370120 -0.61719106 0.77357945 
    3887 Axis point -235.18549940 762.28815719 0.00000000 
    3888 Rotation angle (degrees) 0.31173326 
    3889 Shift along axis 0.37170384 
    3890  
    3891 Fit map MultiPostProcessor_PPout_5.mrc in map Stable_60S.mrc using 20966
    3892 points 
    3893 correlation = 0.818, correlation about mean = 0.2113, overlap = 1.441e+04 
    3894 steps = 68, shift = 2.65, angle = 0.436 degrees 
    3895  
    3896 Position of MultiPostProcessor_PPout_5.mrc (#5) relative to Stable_60S.mrc
    3897 (#50) coordinates: 
    3898 Matrix rotation and translation 
    3899 0.99999041 0.00260182 0.00352261 0.01486523 
    3900 -0.00262368 0.99997723 0.00621766 0.98420510 
    3901 -0.00350635 -0.00622684 0.99997447 3.51546630 
    3902 Axis -0.81776603 0.46189442 -0.34338356 
    3903 Axis point 0.00000000 523.27015458 -213.18390223 
    3904 Rotation angle (degrees) 0.43595863 
    3905 Shift along axis -0.76471077 
    3906  
    3907 Fit map MultiPostProcessor_PPout_6.mrc in map Stable_60S.mrc using 20958
    3908 points 
    3909 correlation = 0.8227, correlation about mean = 0.2461, overlap = 1.506e+04 
    3910 steps = 84, shift = 2.21, angle = 1.05 degrees 
    3911  
    3912 Position of MultiPostProcessor_PPout_6.mrc (#6) relative to Stable_60S.mrc
    3913 (#50) coordinates: 
    3914 Matrix rotation and translation 
    3915 0.99989672 -0.00490389 -0.01350962 5.54445758 
    3916 0.00474986 0.99992362 -0.01140997 2.86381998 
    3917 0.01356454 0.01134462 0.99984364 -4.47863636 
    3918 Axis 0.62068782 -0.73851477 0.26332978 
    3919 Axis point 337.65012800 0.00000000 401.07076604 
    3920 Rotation angle (degrees) 1.05029872 
    3921 Shift along axis 0.14704558 
    3922  
    3923 Fit map MultiPostProcessor_PPout_7.mrc in map Stable_60S.mrc using 20961
    3924 points 
    3925 correlation = 0.8125, correlation about mean = 0.2052, overlap = 1.615e+04 
    3926 steps = 120, shift = 2.42, angle = 1.07 degrees 
    3927  
    3928 Position of MultiPostProcessor_PPout_7.mrc (#7) relative to Stable_60S.mrc
    3929 (#50) coordinates: 
    3930 Matrix rotation and translation 
    3931 0.99982781 0.01829639 0.00309618 -3.59801598 
    3932 -0.01830028 0.99983178 0.00123302 5.36311958 
    3933 -0.00307310 -0.00128946 0.99999445 2.45369240 
    3934 Axis -0.06781110 0.16584717 -0.98381725 
    3935 Axis point 302.78964134 204.24728861 0.00000000 
    3936 Rotation angle (degrees) 1.06572399 
    3937 Shift along axis -1.28054129 
    3938  
    3939 Fit map MultiPostProcessor_PPout_8.mrc in map Stable_60S.mrc using 20955
    3940 points 
    3941 correlation = 0.829, correlation about mean = 0.2004, overlap = 1.263e+04 
    3942 steps = 68, shift = 1.88, angle = 0.37 degrees 
    3943  
    3944 Position of MultiPostProcessor_PPout_8.mrc (#8) relative to Stable_60S.mrc
    3945 (#50) coordinates: 
    3946 Matrix rotation and translation 
    3947 0.99999659 -0.00080404 -0.00248558 1.25940033 
    3948 0.00081871 0.99998223 0.00590518 0.20456388 
    3949 0.00248079 -0.00590720 0.99997948 0.88248004 
    3950 Axis -0.91453356 -0.38450487 0.12563583 
    3951 Axis point 0.00000000 173.06679830 38.77671696 
    3952 Rotation angle (degrees) 0.37002694 
    3953 Shift along axis -1.11954857 
    3954  
    3955 Fit map MultiPostProcessor_PPout_9.mrc in map Stable_60S.mrc using 20956
    3956 points 
    3957 correlation = 0.822, correlation about mean = 0.2167, overlap = 1.676e+04 
    3958 steps = 116, shift = 2.48, angle = 0.549 degrees 
    3959  
    3960 Position of MultiPostProcessor_PPout_9.mrc (#9) relative to Stable_60S.mrc
    3961 (#50) coordinates: 
    3962 Matrix rotation and translation 
    3963 0.99996878 -0.00512299 -0.00601608 4.12513152 
    3964 0.00509034 0.99997230 -0.00543084 1.50305801 
    3965 0.00604374 0.00540004 0.99996716 -1.28279790 
    3966 Axis 0.56532163 -0.62946664 0.53308836 
    3967 Axis point 277.53729146 0.00000000 618.27260090 
    3968 Rotation angle (degrees) 0.54886738 
    3969 Shift along axis 0.70205658 
    3970  
    3971 Fit map MultiPostProcessor_PPout_10.mrc in map Stable_60S.mrc using 20951
    3972 points 
    3973 correlation = 0.8153, correlation about mean = 0.1922, overlap = 1.604e+04 
    3974 steps = 68, shift = 3.11, angle = 0.58 degrees 
    3975  
    3976 Position of MultiPostProcessor_PPout_10.mrc (#10) relative to Stable_60S.mrc
    3977 (#50) coordinates: 
    3978 Matrix rotation and translation 
    3979 0.99998664 -0.00166387 0.00489427 1.02886494 
    3980 0.00162118 0.99996072 0.00871367 -0.34077179 
    3981 -0.00490858 -0.00870562 0.99995006 4.65054117 
    3982 Axis -0.85994281 0.48394006 0.16217391 
    3983 Axis point 0.00000000 539.56003047 25.12943779 
    3984 Rotation angle (degrees) 0.58031133 
    3985 Shift along axis -0.29548171 
    3986  
    3987 
    3988 > hide #!2 models
    3989 
    3990 > hide #!3 models
    3991 
    3992 > hide #!4 models
    3993 
    3994 > hide #!5 models
    3995 
    3996 > hide #!6 models
    3997 
    3998 > hide #!7 models
    3999 
    4000 > hide #!8 models
    4001 
    4002 > hide #!9 models
    4003 
    4004 > hide #!10 models
    4005 
    4006 > hide #!50 models
    4007 
    4008 > show #!52 models
    4009 
    4010 > hide #!1 models
    4011 
    4012 > hide #!52 models
    4013 
    4014 > show #!50 models
    4015 
    4016 > close #1-10
    4017 
    4018 > show #!51 models
    4019 
    4020 > volume #51-57 level 0.03
    4021 
    4022 > hide #!51 models
    4023 
    4024 > show #!54 models
    4025 
    4026 > hide #!54 models
    4027 
    4028 > save
    4029 > /Users/campbell/Desktop/Chimera_sessions/Conformationassignment/RotationPDBsandEMDBsCombined.cxs
    4030 > includeMaps true
    4031 
    4032 ——— End of log from Thu Aug 8 16:15:28 2024 ———
    4033 
    4034 opened ChimeraX session 
    4035 
    4036 > volume #50 level 0.6089
    4037 
    4038 > volume #50 level 0.6
    4039 
    4040 > show #!59 models
    4041 
    4042 > hide #!59 models
    4043 
    4044 > save
    4045 > /Users/campbell/Desktop/Chimera_sessions/Conformationassignment/RotationPDBsandEMDBsCombined.cxs
    4046 > includeMaps true
    4047 
    4048 ——— End of log from Fri Aug 9 12:43:00 2024 ———
    4049 
    4050 opened ChimeraX session 
    4051 
    4052 > open
    4053 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/62_tRNA_AP_T4_correctedmask/9/MultiPostProcessor_PPout_9.mrc
    4054 
    4055 Opened MultiPostProcessor_PPout_9.mrc as #1, grid size 128,128,128, pixel 4,
    4056 shown at level 0.971, step 1, values float32 
    4057 
    4058 > volume #1 level 0.6
    4059 
    4060 > fitmap #1 inMap #50
    4061 
    4062 Fit map MultiPostProcessor_PPout_9.mrc in map Stable_60S.mrc using 63729
    4063 points 
    4064 correlation = 0.7934, correlation about mean = 0.3786, overlap = 3.274e+04 
    4065 steps = 60, shift = 0.195, angle = 0.472 degrees 
    4066  
    4067 Position of MultiPostProcessor_PPout_9.mrc (#1) relative to Stable_60S.mrc
    4068 (#50) coordinates: 
    4069 Matrix rotation and translation 
    4070 0.99997099 -0.00689546 -0.00323670 2.40371084 
    4071 0.00688528 0.99997135 -0.00314441 -0.74270626 
    4072 0.00325829 0.00312203 0.99998982 -1.62795132 
    4073 Axis 0.38040546 -0.39427904 0.83656185 
    4074 Axis point 118.20917088 356.62844856 0.00000000 
    4075 Rotation angle (degrees) 0.47192395 
    4076 Shift along axis -0.15466373 
    4077  
    4078 
    4079 > color #1 #bbbbbbff models
    4080 
    4081 > hide #!50 models
    4082 
    4083 > show #!50 models
    4084 
    4085 > hide #!50 models
    4086 
    4087 > lighting soft
    4088 
    4089 > show #!58 models
    4090 
    4091 > hide #!1 models
    4092 
    4093 > hide #!58 models
    4094 
    4095 > show #!59 models
    4096 
    4097 > show #!60 models
    4098 
    4099 > hide #!59 models
    4100 
    4101 > show #!61 models
    4102 
    4103 > hide #!60 models
    4104 
    4105 Drag select of 2699 residues, 4 pseudobonds 
    4106 
    4107 > log metadata #58
    4108 
    4109 No models had metadata
    4110 
    4111 > log chains #58
    4112 
    4113 Chain information for 3j78 #58 
    4114 --- 
    4115 Chain | Description | UniProt 
    4116 10 | 40S ribosomal protein S10 | RS10A_YEAST 1-105 
    4117 11 | 40S ribosomal protein S11 | RS11A_YEAST 1-156 
    4118 12 | 40S ribosomal protein S12 | RS12_YEAST 1-143 
    4119 13 | 40S ribosomal protein S13 | RS13_YEAST 1-151 
    4120 14 | 40S ribosomal protein S14 | RS14A_YEAST 1-137 
    4121 15 | 40S ribosomal protein S15 | RS15_YEAST 1-142 
    4122 16 | 40S ribosomal protein S16 | RS16A_YEAST 1-143 
    4123 17 | 40S ribosomal protein S17 | RS17A_YEAST 1-136 
    4124 18 | 40S ribosomal protein S18 | RS18A_YEAST 1-146 
    4125 19 | 40S ribosomal protein S19 | RS19A_YEAST 1-144 
    4126 1S | 18S ribosomal RNA |   
    4127 20 | 40S ribosomal protein S20 | RS20_YEAST 1-121 
    4128 21 | 40S ribosomal protein S21 | RS21A_YEAST 1-87 
    4129 22 | 40S ribosomal protein S22 | RS22A_YEAST 1-130 
    4130 23 | 40S ribosomal protein S23 | RS23A_YEAST 1-145 
    4131 24 | 40S ribosomal protein S24 | RS24A_YEAST 1-135 
    4132 25 | 40S ribosomal protein S25 | RS25A_YEAST 1-108 
    4133 26 | 40S ribosomal protein S26 | RS26A_YEAST 1-119 
    4134 27 | 40S ribosomal protein S27 | RS27_YEAST 1-82 
    4135 28 | 40S ribosomal protein S28 | RS28A_YEAST 1-67 
    4136 29 | 40S ribosomal protein S29 | RS29A_YEAST 1-56 
    4137 2S | 25S ribosomal RNA |   
    4138 30 | 40S ribosomal protein S30 | RS30A_YEAST 1-63 
    4139 31 | 40S ribosomal protein S31 | RS27A_YEAST 1-152 
    4140 5S | 5S ribosomal RNA |   
    4141 60 | 60S ribosomal protein L10 | RL10_YEAST 1-221 
    4142 61 | 60S ribosomal protein L11 | RL11A_YEAST 1-174 
    4143 62 | 60S ribosomal protein L12 | RL12A_YEAST 1-165 
    4144 63 | 60S ribosomal protein L13 | RL13A_YEAST 1-199 
    4145 64 | 60S ribosomal protein L14 | RL14A_YEAST 1-138 
    4146 65 | 60S ribosomal protein L15 | RL15A_YEAST 1-204 
    4147 66 | 60S ribosomal protein L16 | RL16A_YEAST 1-199 
    4148 67 | 60S ribosomal protein L17 | RL17A_YEAST 1-184 
    4149 68 | 60S ribosomal protein L18 | RL18A_YEAST 1-186 
    4150 69 | 60S ribosomal protein L19 | RL19A_YEAST 1-189 
    4151 70 | 60S ribosomal protein L20 | RL20A_YEAST 1-172 
    4152 71 | 60S ribosomal protein L21 | RL21A_YEAST 1-160 
    4153 72 | 60S ribosomal protein L22 | RL22A_YEAST 1-121 
    4154 73 | 60S ribosomal protein L23 | RL23A_YEAST 1-137 
    4155 74 | 60S ribosomal protein L24 | RL24A_YEAST 1-155 
    4156 75 | 60S ribosomal protein L25 | RL25_YEAST 1-142 
    4157 76 | 60S ribosomal protein L26 | RL26A_YEAST 1-127 
    4158 77 | 60S ribosomal protein L27 | RL27A_YEAST 1-136 
    4159 78 | 60S ribosomal protein L28 | RL28_YEAST 1-149 
    4160 79 | 60S ribosomal protein L29 | RL29_YEAST 1-59 
    4161 80 | 60S ribosomal protein L30 | RL30_YEAST 1-105 
    4162 81 | 60S ribosomal protein L31 | RL31A_YEAST 1-113 
    4163 82 | 60S ribosomal protein L32 | RL32_YEAST 1-130 
    4164 83 | 60S ribosomal protein L33 | RL33A_YEAST 1-107 
    4165 84 | 60S ribosomal protein L34 | RL34A_YEAST 1-121 
    4166 85 | 60S ribosomal protein L35 | RL35A_YEAST 1-120 
    4167 86 | 60S ribosomal protein L36 | RL36A_YEAST 1-100 
    4168 87 | 60S ribosomal protein L37 | RL37A_YEAST 1-88 
    4169 88 | 60S ribosomal protein L38 | RL38_YEAST 1-78 
    4170 89 | 60S ribosomal protein L39 | RL39_YEAST 1-51 
    4171 8S | 5.8S ribosomal RNA |   
    4172 90 | 60S ribosomal protein L40 | RL401_YEAST 1-128 
    4173 91 | 60S ribosomal protein L41 | RL41A_YEAST 1-25 
    4174 92 | 60S ribosomal protein L42 | RL44A_YEAST 1-106 
    4175 93 | 60S ribosomal protein L43 | RL43A_YEAST 1-92 
    4176 ET PT | P/E-site initiator transfer RNAfMet |   
    4177 L1 | 60S ribosomal protein L1 | RL1A_YEAST 1-217 
    4178 L2 | 60S ribosomal protein L2 | RL2A_YEAST 1-254 
    4179 L3 | 60S ribosomal protein L3 | RL3_YEAST 1-387 
    4180 L4 | 60S ribosomal protein L4 | RL4A_YEAST 1-362 
    4181 L5 | 60S ribosomal protein L5 | RL5_YEAST 1-297 
    4182 L6 | 60S ribosomal protein L6 | RL6A_YEAST 1-176 
    4183 L7 | 60S ribosomal protein L7 | RL7A_YEAST 1-244 
    4184 L8 | 60S ribosomal protein L8 | RL8A_YEAST 1-256 
    4185 L9 | 60S ribosomal protein L9 | RL9A_YEAST 1-191 
    4186 MR | messenger RNA |   
    4187 P0 | 60S acidic ribosomal protein P0 | RLA0_YEAST 1-312 
    4188 RC | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 1-319 
    4189 S0 | 40S ribosomal protein S0 | RSSA1_YEAST 1-252 
    4190 S1 | 40S ribosomal protein S1 | RS3A1_YEAST 1-255 
    4191 S2 | 40S ribosomal protein S2 | RS2_YEAST 1-254 
    4192 S3 | 40S ribosomal protein S3 | RS3_YEAST 1-240 
    4193 S4 | 40S ribosomal protein S4 | RS4A_YEAST 1-261 
    4194 S5 | 40S ribosomal protein S5 | RS5_YEAST 1-225 
    4195 S6 | 40S ribosomal protein S6 | RS6A_YEAST 1-236 
    4196 S7 | 40S ribosomal protein S7 | RS7A_YEAST 1-190 
    4197 S8 | 40S ribosomal protein S8 | RS8A_YEAST 1-200 
    4198 S9 | 40S ribosomal protein S9 | RS9A_YEAST 1-197 
    4199  
    4200 
    4201 > select clear
    4202 
    4203 > select #58/5S:1-121
    4204 
    4205 2580 atoms, 2884 bonds, 107 pseudobonds, 121 residues, 2 models selected 
    4206 
    4207 > sequence chain #58/5S
    4208 
    4209 Alignment identifier is 58/5S 
    4210 
    4211 > select #58/5S:1-121
    4212 
    4213 2580 atoms, 2884 bonds, 107 pseudobonds, 121 residues, 2 models selected 
    4214 
    4215 > log metadata #61
    4216 
    4217 No models had metadata
    4218 
    4219 > log chains #61
    4220 
    4221 Chain information for 7osm #61 
    4222 --- 
    4223 Chain | Description | UniProt 
    4224 18S | 18S rRNA |   
    4225 25S | 25S rRNA |   
    4226 58S | 5.8S rRNA |   
    4227 AB | 5S rRNA |   
    4228 ASIT | PHE tRNA |   
    4229 PSIT | FMET tRNA |   
    4230 RACK | BJ4_G0022010.mRNA.1.CDS.1 | A0A6L1BKH8_YEASX 1-319 
    4231 eEF2 | Elongation factor 2 | A0A6A5Q7K2_YEASX 1-842 
    4232 eL13 | 60S ribosomal protein L13 | A0A6L1AF71_YEASX 1-199 
    4233 eL14 | 60S ribosomal protein L14-A | RL14A_YEAST 1-138 
    4234 eL15 | 60S ribosomal protein L15-A | RL15A_YEAST 1-204 
    4235 eL18 | BJ4_G0033900.mRNA.1.CDS.1 | A0A6L1A7F6_YEASX 1-186 
    4236 eL19 | 60S ribosomal protein L19-A | RL19A_YEAST 1-189 
    4237 eL20 | 60S ribosomal protein L20 | A0A6V8RR03_YEASX 1-172 
    4238 eL21 | BJ4_G0003770.mRNA.1.CDS.1 | A0A6L0YTI6_YEASX 1-160 
    4239 eL22 | 60S ribosomal protein L22-A | A0A6L0ZZW6_YEASX 1-121 
    4240 eL24 | 60S ribosomal protein L24-A | A0A6A5PY83_YEASX 1-155 
    4241 eL27 | 60S ribosomal protein L27 | A0A6L0ZQQ7_YEASX 1-136 
    4242 eL29 | 60S ribosomal protein L29 | A0A6A5PWR1_YEASX 1-59 
    4243 eL30 | BJ4_G0020000.mRNA.1.CDS.1 | A0A6L0ZM08_YEASX 1-105 
    4244 eL31 | BJ4_G0008090.mRNA.1.CDS.1 | A0A6L0YFR2_YEASX 1-113 
    4245 eL32 | HN1_G0013350.mRNA.1.CDS.1 | A0A7I9CD28_YEASX 1-130 
    4246 eL33 | BJ4_G0025510.mRNA.1.CDS.1 | A0A6L1C3H0_YEASX 1-107 
    4247 eL34 | 60S ribosomal protein L34-A | A0A6L0ZFW3_YEASX 1-121 
    4248 eL36 | 60S ribosomal protein L36-A | RL36A_YEAST 1-100 
    4249 eL37 | Ribosomal protein L37 | A0A6L1BIE7_YEASX 1-88 
    4250 eL38 | BJ4_G0032190.mRNA.1.CDS.1 | A0A6A5PUL8_YEASX 1-78 
    4251 eL39 | 60S ribosomal protein L39 | A0A6L1ASX0_YEASX 1-51 
    4252 eL40 | Ubiquitin | A0A6V8S9K0_YEASX 1-128 
    4253 eL41 | eL41 |   
    4254 eL42 | BJ4_G0001880.mRNA.1.CDS.1 | A0A6L1B5X0_YEASX 1-106 
    4255 eL43 | 60S ribosomal protein L43-A | RL43A_YEAST 1-92 
    4256 eL6 | 60S ribosomal protein L6 | A0A6L1BLT3_YEASX 1-176 
    4257 eL8 | 60S ribosomal protein L8-A | RL8A_YEAST 1-256 
    4258 eS1 | 40S ribosomal protein S1 | A0A6A5PRY4_YEASX 1-255 
    4259 eS10 | 40S ribosomal protein S10-A | A0A6L0ZM59_YEASX 1-105 
    4260 eS17 | BJ4_G0020710.mRNA.1.CDS.1 | A0A6L1BLL7_YEASX 1-136 
    4261 eS19 | 40S ribosomal protein S19-A | A0A6L1BWT3_YEASX 1-144 
    4262 eS21 | 40S ribosomal protein S21 | A0A6L1BDN3_YEASX 1-87 
    4263 eS24 | 40S ribosomal protein S24 | A0A6L1AUB6_YEASX 1-135 
    4264 eS25 | 40S ribosomal protein S25 | A0A6A5PZ18_YEASX 1-108 
    4265 eS26 | 40S ribosomal protein S26 | A0A6A5PUG0_YEASX 1-119 
    4266 eS27 | 40S ribosomal protein S27-A | RS27A_YEAST 1-82 
    4267 eS28 | eS28 | A0A6A5Q700_YEASX 1-67 
    4268 eS30 | 40S ribosomal protein S30 | A0A6L1A1E1_YEASX 1-63 
    4269 eS31 | Ubiquitin-40S ribosomal protein S31 | A0A6A5PU37_YEASX 1-152 
    4270 eS4 | 40S ribosomal protein S4 | A0A6L0Z3Q0_YEASX 1-261 
    4271 eS6 | 40S ribosomal protein S6 | A0A6L1AMY1_YEASX 1-236 
    4272 eS7 | 40S ribosomal protein S7 | A0A6L1ACT7_YEASX 1-190 
    4273 eS8 | 40S ribosomal protein S8 | A0A6A5Q1H1_YEASX 1-200 
    4274 mRNA | MRNA |   
    4275 uL10 | 60S acidic ribosomal protein P0 | A0A6A5PT43_YEASX 1-312 
    4276 uL11 | 60S ribosomal protein L12-B | A0A6A5Q275_YEASX 1-165 
    4277 uL13 | 60S ribosomal protein L16-A | A0A6L0ZD57_YEASX 1-199 
    4278 uL14 | 60S ribosomal protein L23-B | A0A6L0Z7E4_YEASX 1-137 
    4279 uL15 | 60S ribosomal protein L28 | A0A6L0ZDK5_YEASX 1-149 
    4280 uL16 | 60S ribosomal protein L10 | A0A6A5PUZ5_YEASX 1-221 
    4281 uL18 | 60S ribosomal protein L5 | A0A6A5Q0W8_YEASX 1-297 
    4282 uL2 | 60S ribosomal protein L2-B | A0A6L0Y8L2_YEASX 1-254 
    4283 uL22 | BJ4_G0005750.mRNA.1.CDS.1 | A0A6L1BCL1_YEASX 1-184 
    4284 uL23 | 60S ribosomal protein L25 | A0A6L0YSM0_YEASX 1-142 
    4285 uL24 | 60S ribosomal protein L26-A | RL26A_YEAST 1-127 
    4286 uL29 | BJ4_G0044250.mRNA.1.CDS.1 | A0A7I9BRN0_YEASX 1-120 
    4287 uL3 | 60S ribosomal protein L3 | A0A6A5Q627_YEASX 1-387 
    4288 uL30 | 60S ribosomal protein L7-A | A0A6V8RJA7_YEASX 1-244 
    4289 uL4 | BJ4_G0008850.mRNA.1.CDS.1 | A0A6A5Q3W0_YEASX 1-362 
    4290 uL5 | BJ4_G0027750.mRNA.1.CDS.1 | A0A6A5Q7I9_YEASX 1-174 
    4291 uL6 | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    4292 uS10 | 40S ribosomal protein S20 | A0A6A5PVE9_YEASX 1-121 
    4293 uS11 | 40S ribosomal protein S14-A | A0A6L1AAG7_YEASX 1-137 
    4294 uS12 | 40S ribosomal protein S23 | A0A6L1B1T2_YEASX 1-145 
    4295 uS13 | 40S ribosomal protein S18-B | A0A6L1AIT6_YEASX 1-146 
    4296 uS14 | HLJ1_G0030400.mRNA.1.CDS.1 | A0A6A5PV92_YEASX 1-56 
    4297 uS15 | 40S ribosomal protein S13 | A0A6L0YFM5_YEASX 1-151 
    4298 uS17 | 40S ribosomal protein S11-B | A0A6L0YMX6_YEASX 1-156 
    4299 uS19 | 40S ribosomal protein S15 | A0A6A5Q6F2_YEASX 1-142 
    4300 uS2 | 40S ribosomal protein S0 | A0A6L0ZRP4_YEASX 1-252 
    4301 uS3 | BJ4_G0045400.mRNA.1.CDS.1 | A0A6L0ZVK6_YEASX 1-240 
    4302 uS4 | BJ4_G0026100.mRNA.1.CDS.1 | A0A7I9GPQ3_YEASX 1-197 
    4303 uS5 | 40S ribosomal protein S2 | A0A6A5PWF7_YEASX 1-254 
    4304 uS7 | Rps5p | A0A1L4AA68_YEASX 1-225 
    4305 uS8 | 40S ribosomal protein S22-A | A0A6A5PSE9_YEASX 1-130 
    4306 uS9 | BJ4_G0008010.mRNA.1.CDS.1 | A0A6L0YQ58_YEASX 1-143 
    4307  
    4308 Drag select of 2187 residues, 5 pseudobonds 
    4309 
    4310 > select up
    4311 
    4312 53529 atoms, 58170 bonds, 5 pseudobonds, 3849 residues, 2 models selected 
    4313 
    4314 > select up
    4315 
    4316 60691 atoms, 65473 bonds, 5 pseudobonds, 4754 residues, 2 models selected 
    4317 
    4318 > select up
    4319 
    4320 60820 atoms, 65473 bonds, 5 pseudobonds, 4883 residues, 2 models selected 
    4321 
    4322 > select add #61/eS8:192
    4323 
    4324 60832 atoms, 65485 bonds, 5 pseudobonds, 4884 residues, 2 models selected 
    4325 
    4326 > select add #61/eS6:40
    4327 
    4328 60837 atoms, 65489 bonds, 5 pseudobonds, 4885 residues, 2 models selected 
    4329 
    4330 > select add #61/eS6:209
    4331 
    4332 60842 atoms, 65493 bonds, 5 pseudobonds, 4886 residues, 2 models selected 
    4333 
    4334 > select add #61/eS24:79
    4335 
    4336 60849 atoms, 65499 bonds, 5 pseudobonds, 4887 residues, 2 models selected 
    4337 
    4338 > select up
    4339 
    4340 61346 atoms, 66000 bonds, 5 pseudobonds, 4948 residues, 2 models selected 
    4341 
    4342 > select up
    4343 
    4344 64139 atoms, 68837 bonds, 5 pseudobonds, 5298 residues, 2 models selected 
    4345 
    4346 > select up
    4347 
    4348 64202 atoms, 68901 bonds, 5 pseudobonds, 5306 residues, 2 models selected 
    4349 
    4350 > select up
    4351 
    4352 65116 atoms, 69832 bonds, 5 pseudobonds, 5420 residues, 2 models selected 
    4353 
    4354 > select up
    4355 
    4356 65118 atoms, 69832 bonds, 5 pseudobonds, 5422 residues, 2 models selected 
    4357 
    4358 > select up
    4359 
    4360 207066 atoms, 221714 bonds, 28 pseudobonds, 17603 residues, 2 models selected 
    4361 
    4362 > select down
    4363 
    4364 65118 atoms, 69832 bonds, 5 pseudobonds, 5422 residues, 2 models selected 
    4365 
    4366 > select add #61/eS26:54
    4367 
    4368 65124 atoms, 69837 bonds, 5 pseudobonds, 5423 residues, 2 models selected 
    4369 
    4370 > select add #61/eS26:29
    4371 
    4372 65130 atoms, 69842 bonds, 5 pseudobonds, 5424 residues, 2 models selected 
    4373 
    4374 > select up
    4375 
    4376 65199 atoms, 69912 bonds, 5 pseudobonds, 5433 residues, 2 models selected 
    4377 
    4378 > select up
    4379 
    4380 65868 atoms, 70593 bonds, 5 pseudobonds, 5516 residues, 2 models selected 
    4381 
    4382 > select add #61/uS11:65
    4383 
    4384 65873 atoms, 70597 bonds, 5 pseudobonds, 5517 residues, 2 models selected 
    4385 
    4386 > select up
    4387 
    4388 65941 atoms, 70666 bonds, 5 pseudobonds, 5530 residues, 2 models selected 
    4389 
    4390 > select up
    4391 
    4392 66759 atoms, 71494 bonds, 5 pseudobonds, 5643 residues, 2 models selected 
    4393 
    4394 > select up
    4395 
    4396 66761 atoms, 71494 bonds, 5 pseudobonds, 5645 residues, 2 models selected 
    4397 
    4398 > select up
    4399 
    4400 207066 atoms, 221714 bonds, 28 pseudobonds, 17603 residues, 2 models selected 
    4401 
    4402 > select down
    4403 
    4404 66761 atoms, 71494 bonds, 5 pseudobonds, 5645 residues, 2 models selected 
    4405 
    4406 > color (#!61 & sel) yellow
    4407 
    4408 > color (#!61 & sel) #f2ffbcff
    4409 
    4410 > color (#!61 & sel) #ffffa6ff
    4411 
    4412 > color (#!61 & sel) #ffffa5ff
    4413 
    4414 > color (#!61 & sel) #feff86ff
    4415 
    4416 > color (#!61 & sel) #f2ff71ff
    4417 
    4418 > color (#!61 & sel) yellow
    4419 
    4420 > select clear
    4421 
    4422 > select add /*S*
    4423 
    4424 551081 atoms, 605265 bonds, 18511 pseudobonds, 34745 residues, 14 models
    4425 selected 
    4426 
    4427 > select /eS*
    4428 
    4429 33073 atoms, 33567 bonds, 21 pseudobonds, 4183 residues, 6 models selected 
    4430 
    4431 > select add /uS*
    4432 
    4433 67393 atoms, 68467 bonds, 38 pseudobonds, 8578 residues, 6 models selected 
    4434 
    4435 > select add #61/18S:495
    4436 
    4437 67413 atoms, 68488 bonds, 38 pseudobonds, 8579 residues, 6 models selected 
    4438 
    4439 > select up
    4440 
    4441 104311 atoms, 109758 bonds, 38 pseudobonds, 10310 residues, 6 models selected 
    4442 
    4443 > select up
    4444 
    4445 104433 atoms, 109758 bonds, 38 pseudobonds, 10432 residues, 6 models selected 
    4446 
    4447 > select up
    4448 
    4449 415117 atoms, 444276 bonds, 996 pseudobonds, 35471 residues, 6 models selected 
    4450 
    4451 > select down
    4452 
    4453 104433 atoms, 109758 bonds, 38 pseudobonds, 10432 residues, 6 models selected 
    4454 
    4455 > color (#!61 & sel) yellow
    4456 
    4457 > name frozen 40S sel
    4458 
    4459 Not registering illegal selector name "40S" 
    4460 
    4461 > Name frozen ssu
    4462 
    4463 Unknown command: Name frozen ssu 
    4464 
    4465 > name frozen ssu
    4466 
    4467 Missing or invalid "objects" argument: empty atom specifier 
    4468 
    4469 > name frozen sel ssu
    4470 
    4471 Missing or invalid "objects" argument: invalid objects specifier 
    4472 
    4473 > name frozen ssu sel
    4474 
    4475 > select ~sel & ##selected
    4476 
    4477 310684 atoms, 334518 bonds, 8685 pseudobonds, 25039 residues, 8 models
    4478 selected 
    4479 
    4480 > select subtract /eEF2
    4481 
    4482 297482 atoms, 321070 bonds, 8672 pseudobonds, 23343 residues, 8 models
    4483 selected 
    4484 
    4485 > select subtract /*SIT
    4486 
    4487 292549 atoms, 315571 bonds, 8478 pseudobonds, 23104 residues, 8 models
    4488 selected 
    4489 
    4490 > color (#!61 & sel) cornflower blue
    4491 
    4492 > select #61/ASIT:17
    4493 
    4494 20 atoms, 21 bonds, 1 residue, 1 model selected 
    4495 
    4496 > select add #61/PSIT:54
    4497 
    4498 43 atoms, 46 bonds, 2 residues, 1 model selected 
    4499 
    4500 > select up
    4501 
    4502 3280 atoms, 3663 bonds, 153 residues, 1 model selected 
    4503 
    4504 > select up
    4505 
    4506 3287 atoms, 3663 bonds, 160 residues, 1 model selected 
    4507 
    4508 > color sel purple
    4509 
    4510 > color sel magenta
    4511 
    4512 > color sel #caa4daff
    4513 
    4514 > select #61/eEF2:622
    4515 
    4516 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4517 
    4518 > select ssu
    4519 
    4520 104433 atoms, 109758 bonds, 1519 pseudobonds, 10432 residues, 7 models
    4521 selected 
    4522 
    4523 > color (#!61 & sel) #fffc79ff
    4524 
    4525 > select ~sel & ##selected
    4526 
    4527 310684 atoms, 334518 bonds, 8685 pseudobonds, 25039 residues, 8 models
    4528 selected 
    4529 
    4530 > color (#!61 & sel) #76d6ffff
    4531 
    4532 > select #61/ASIT:44
    4533 
    4534 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4535 
    4536 > select add #61/PSIT:46
    4537 
    4538 46 atoms, 50 bonds, 2 residues, 1 model selected 
    4539 
    4540 > select up
    4541 
    4542 3280 atoms, 3663 bonds, 153 residues, 1 model selected 
    4543 
    4544 > select up
    4545 
    4546 3287 atoms, 3663 bonds, 160 residues, 1 model selected 
    4547 
    4548 > color sel #ff9300ff
    4549 
    4550 > color sel #ffd479ff
    4551 
    4552 > color sel #ff9300ff
    4553 
    4554 > color sel orange
    4555 
    4556 > color sel orange red
    4557 
    4558 > select #61/eEF2:589
    4559 
    4560 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4561 
    4562 > select up
    4563 
    4564 62 atoms, 62 bonds, 7 residues, 1 model selected 
    4565 
    4566 > select up
    4567 
    4568 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    4569 
    4570 > color sel forest green
    4571 
    4572 > select clear
    4573 
    4574 [Repeated 1 time(s)]
    4575 
    4576 > select ssu
    4577 
    4578 104433 atoms, 109758 bonds, 1519 pseudobonds, 10432 residues, 7 models
    4579 selected 
    4580 
    4581 > select add #61/RACK:254
    4582 
    4583 104438 atoms, 109762 bonds, 1519 pseudobonds, 10433 residues, 7 models
    4584 selected 
    4585 
    4586 > select up
    4587 
    4588 104455 atoms, 109779 bonds, 1519 pseudobonds, 10436 residues, 7 models
    4589 selected 
    4590 
    4591 > select up
    4592 
    4593 106869 atoms, 112247 bonds, 1519 pseudobonds, 10750 residues, 7 models
    4594 selected 
    4595 
    4596 > color (#!61 & sel) #fffc79ff
    4597 
    4598 > select clear
    4599 
    4600 > show #!1 models
    4601 
    4602 > volume #1 level 0.77
    4603 
    4604 > volume #1 level 0.7
    4605 
    4606 > volume #1 level 0.77
    4607 
    4608 > ui tool show "Color Zone"
    4609 
    4610 > color zone #1 near #61 distance 4
    4611 
    4612 > color zone #1 near #61 distance 8
    4613 
    4614 [Repeated 1 time(s)]
    4615 
    4616 > color zone #1 near #61 distance 20
    4617 
    4618 [Repeated 2 time(s)]
    4619 
    4620 > save /Users/campbell/Desktop/Chimera_sessions/subunit_colouring.cxs
    4621 > includeMaps true
    4622 
    4623 > volume #1 level 0.6992
    4624 
    4625 > volume #1 level 0.7
    4626 
    4627 > lighting simple
    4628 
    4629 > lighting soft
    4630 
    4631 > set bgColor white
    4632 
    4633 > hide #!61 models
    4634 
    4635 > show #!61 models
    4636 
    4637 > select #61/PSIT:53
    4638 
    4639 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4640 
    4641 > select add #61/ASIT:44
    4642 
    4643 46 atoms, 50 bonds, 2 residues, 1 model selected 
    4644 
    4645 > select up
    4646 
    4647 3280 atoms, 3663 bonds, 153 residues, 1 model selected 
    4648 
    4649 > select up
    4650 
    4651 3287 atoms, 3663 bonds, 160 residues, 1 model selected 
    4652 
    4653 > select up
    4654 
    4655 207066 atoms, 221714 bonds, 17603 residues, 1 model selected 
    4656 
    4657 > select down
    4658 
    4659 3287 atoms, 3663 bonds, 160 residues, 1 model selected 
    4660 
    4661 > color sel #76d6ffff
    4662 
    4663 > color zone #1 near #61 distance 20
    4664 
    4665 > select #61/PSIT:53
    4666 
    4667 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4668 
    4669 > select up
    4670 
    4671 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    4672 
    4673 > select up
    4674 
    4675 1650 atoms, 1836 bonds, 83 residues, 1 model selected 
    4676 
    4677 > color sel #ff7e79ff
    4678 
    4679 > color zone #1 near #61 distance 4
    4680 
    4681 > color zone #1 near #61 distance 20
    4682 
    4683 > color zone #1 near sel distance 4
    4684 
    4685 > color zone #1 near sel distance 20
    4686 
    4687 > color zone #1 near #61 distance 20
    4688 
    4689 [Repeated 1 time(s)]
    4690 
    4691 > select clear
    4692 
    4693 No atoms selected for color zoning 
    4694 
    4695 [Repeated 1 time(s)]
    4696 
    4697 > hide #!61 models
    4698 
    4699 > show #!61 models
    4700 
    4701 > select #61/PSIT:71
    4702 
    4703 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4704 
    4705 > select up
    4706 
    4707 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    4708 
    4709 > select up
    4710 
    4711 1650 atoms, 1836 bonds, 83 residues, 1 model selected 
    4712 
    4713 > color sel orange red
    4714 
    4715 > color zone #1 near sel distance 4
    4716 
    4717 > undo
    4718 
    4719 > select clear
    4720 
    4721 No atoms selected for color zoning 
    4722 
    4723 > color zone #1 near #61 distance 20
    4724 
    4725 > show #!59 models
    4726 
    4727 > hide #!61 models
    4728 
    4729 > hide #!1 models
    4730 
    4731 > log metadata #59
    4732 
    4733 No models had metadata
    4734 
    4735 > log chains #59
    4736 
    4737 Chain information for 3j77 #59 
    4738 --- 
    4739 Chain | Description | UniProt 
    4740 10 | 40S ribosomal protein S10 | RS10A_YEAST 1-105 
    4741 11 | 40S ribosomal protein S11 | RS11A_YEAST 1-156 
    4742 12 | 40S ribosomal protein S12 | RS12_YEAST 1-143 
    4743 13 | 40S ribosomal protein S13 | RS13_YEAST 1-151 
    4744 14 | 40S ribosomal protein S14 | RS14A_YEAST 1-137 
    4745 15 | 40S ribosomal protein S15 | RS15_YEAST 1-142 
    4746 16 | 40S ribosomal protein S16 | RS16A_YEAST 1-143 
    4747 17 | 40S ribosomal protein S17 | RS17A_YEAST 1-136 
    4748 18 | 40S ribosomal protein S18 | RS18A_YEAST 1-146 
    4749 19 | 40S ribosomal protein S19 | RS19A_YEAST 1-144 
    4750 1S | 18S ribosomal RNA |   
    4751 20 | 40S ribosomal protein S20 | RS20_YEAST 1-121 
    4752 21 | 40S ribosomal protein S21 | RS21A_YEAST 1-87 
    4753 22 | 40S ribosomal protein S22 | RS22A_YEAST 1-130 
    4754 23 | 40S ribosomal protein S23 | RS23A_YEAST 1-145 
    4755 24 | 40S ribosomal protein S24 | RS24A_YEAST 1-135 
    4756 25 | 40S ribosomal protein S25 | RS25A_YEAST 1-108 
    4757 26 | 40S ribosomal protein S26 | RS26A_YEAST 1-119 
    4758 27 | 40S ribosomal protein S27 | RS27_YEAST 1-82 
    4759 28 | 40S ribosomal protein S28 | RS28A_YEAST 1-67 
    4760 29 | 40S ribosomal protein S29 | RS29A_YEAST 1-56 
    4761 2S | 25S ribosomal RNA |   
    4762 30 | 40S ribosomal protein S30 | RS30A_YEAST 1-63 
    4763 31 | 40S ribosomal protein S31 | RS27A_YEAST 1-152 
    4764 5S | 5S ribosomal RNA |   
    4765 60 | 60S ribosomal protein L10 | RL10_YEAST 1-221 
    4766 61 | 60S ribosomal protein L11 | RL11A_YEAST 1-174 
    4767 62 | 60S ribosomal protein L12 | RL12A_YEAST 1-165 
    4768 63 | 60S ribosomal protein L13 | RL13A_YEAST 1-199 
    4769 64 | 60S ribosomal protein L14 | RL14A_YEAST 1-138 
    4770 65 | 60S ribosomal protein L15 | RL15A_YEAST 1-204 
    4771 66 | 60S ribosomal protein L16 | RL16A_YEAST 1-199 
    4772 67 | 60S ribosomal protein L17 | RL17A_YEAST 1-184 
    4773 68 | 60S ribosomal protein L18 | RL18A_YEAST 1-186 
    4774 69 | 60S ribosomal protein L19 | RL19A_YEAST 1-189 
    4775 70 | 60S ribosomal protein L20 | RL20A_YEAST 1-172 
    4776 71 | 60S ribosomal protein L21 | RL21A_YEAST 1-160 
    4777 72 | 60S ribosomal protein L22 | RL22A_YEAST 1-121 
    4778 73 | 60S ribosomal protein L23 | RL23A_YEAST 1-137 
    4779 74 | 60S ribosomal protein L24 | RL24A_YEAST 1-155 
    4780 75 | 60S ribosomal protein L25 | RL25_YEAST 1-142 
    4781 76 | 60S ribosomal protein L26 | RL26A_YEAST 1-127 
    4782 77 | 60S ribosomal protein L27 | RL27A_YEAST 1-136 
    4783 78 | 60S ribosomal protein L28 | RL28_YEAST 1-149 
    4784 79 | 60S ribosomal protein L29 | RL29_YEAST 1-59 
    4785 80 | 60S ribosomal protein L30 | RL30_YEAST 1-105 
    4786 81 | 60S ribosomal protein L31 | RL31A_YEAST 1-113 
    4787 82 | 60S ribosomal protein L32 | RL32_YEAST 1-130 
    4788 83 | 60S ribosomal protein L33 | RL33A_YEAST 1-107 
    4789 84 | 60S ribosomal protein L34 | RL34A_YEAST 1-121 
    4790 85 | 60S ribosomal protein L35 | RL35A_YEAST 1-120 
    4791 86 | 60S ribosomal protein L36 | RL36A_YEAST 1-100 
    4792 87 | 60S ribosomal protein L37 | RL37A_YEAST 1-88 
    4793 88 | 60S ribosomal protein L38 | RL38_YEAST 1-78 
    4794 89 | 60S ribosomal protein L39 | RL39_YEAST 1-51 
    4795 8S | 5.8S ribosomal RNA |   
    4796 90 | 60S ribosomal protein L40 | RL401_YEAST 1-128 
    4797 91 | 60S ribosomal protein L41 | RL41A_YEAST 1-25 
    4798 92 | 60S ribosomal protein L42 | RL44A_YEAST 1-106 
    4799 93 | 60S ribosomal protein L43 | RL43A_YEAST 1-92 
    4800 L1 | 60S ribosomal protein L1 | RL1A_YEAST 1-217 
    4801 L2 | 60S ribosomal protein L2 | RL2A_YEAST 1-254 
    4802 L3 | 60S ribosomal protein L3 | RL3_YEAST 1-387 
    4803 L4 | 60S ribosomal protein L4 | RL4A_YEAST 1-362 
    4804 L5 | 60S ribosomal protein L5 | RL5_YEAST 1-297 
    4805 L6 | 60S ribosomal protein L6 | RL6A_YEAST 1-176 
    4806 L7 | 60S ribosomal protein L7 | RL7A_YEAST 1-244 
    4807 L8 | 60S ribosomal protein L8 | RL8A_YEAST 1-256 
    4808 L9 | 60S ribosomal protein L9 | RL9A_YEAST 1-191 
    4809 MR | messenger RNA |   
    4810 P0 | 60S acidic ribosomal protein P0 | RLA0_YEAST 1-312 
    4811 PT | P/E-site initiator transfer RNAfMet |   
    4812 RC | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 1-319 
    4813 S0 | 40S ribosomal protein S0 | RSSA1_YEAST 1-252 
    4814 S1 | 40S ribosomal protein S1 | RS3A1_YEAST 1-255 
    4815 S2 | 40S ribosomal protein S2 | RS2_YEAST 1-254 
    4816 S3 | 40S ribosomal protein S3 | RS3_YEAST 1-240 
    4817 S4 | 40S ribosomal protein S4 | RS4A_YEAST 1-261 
    4818 S5 | 40S ribosomal protein S5 | RS5_YEAST 1-225 
    4819 S6 | 40S ribosomal protein S6 | RS6A_YEAST 1-236 
    4820 S7 | 40S ribosomal protein S7 | RS7A_YEAST 1-190 
    4821 S8 | 40S ribosomal protein S8 | RS8A_YEAST 1-200 
    4822 S9 | 40S ribosomal protein S9 | RS9A_YEAST 1-197 
    4823  
    4824 
    4825 > select /L
    4826 
    4827 Nothing selected 
    4828 
    4829 > select /L*
    4830 
    4831 36194 atoms, 36880 bonds, 2 pseudobonds, 4602 residues, 4 models selected 
    4832 
    4833 > select /S*
    4834 
    4835 33308 atoms, 33872 bonds, 2 pseudobonds, 4218 residues, 4 models selected 
    4836 
    4837 > select /1-31
    4838 
    4839 465091 atoms, 515513 bonds, 17375 pseudobonds, 25662 residues, 14 models
    4840 selected 
    4841 
    4842 > set bgColor black
    4843 
    4844 > select add /S*
    4845 
    4846 498399 atoms, 549385 bonds, 17377 pseudobonds, 29880 residues, 14 models
    4847 selected 
    4848 
    4849 > select subtract /2S
    4850 
    4851 357483 atoms, 391662 bonds, 12006 pseudobonds, 23291 residues, 14 models
    4852 selected 
    4853 
    4854 > select add RC
    4855 
    4856 Expected an objects specifier or a keyword 
    4857 
    4858 > select add /RC
    4859 
    4860 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    4861 selected 
    4862 
    4863 > name frozen
    4864 
    4865 Missing or invalid "name" argument: Expected a text string 
    4866 
    4867 > name frozen ssu
    4868 
    4869 Missing or invalid "objects" argument: empty atom specifier 
    4870 
    4871 > name frozen ssu sel
    4872 
    4873 > select ssu
    4874 
    4875 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    4876 selected 
    4877 
    4878 > color (#!59 & sel) #fffc79ff
    4879 
    4880 > select ~sel & ##selected
    4881 
    4882 469631 atoms, 495444 bonds, 7139 pseudobonds, 45690 residues, 14 models
    4883 selected 
    4884 
    4885 > color (#!59 & sel) #73fdffff
    4886 
    4887 > color (#!59 & sel) #76d6ffff
    4888 
    4889 > show #!58 models
    4890 
    4891 > show #!57 models
    4892 
    4893 > hide #!58 models
    4894 
    4895 > hide #!57 models
    4896 
    4897 > show #!60 models
    4898 
    4899 > hide #!60 models
    4900 
    4901 > select subtract #59/PT:54
    4902 
    4903 469608 atoms, 495417 bonds, 7136 pseudobonds, 45689 residues, 14 models
    4904 selected 
    4905 
    4906 > select up
    4907 
    4908 469631 atoms, 495444 bonds, 7136 pseudobonds, 45690 residues, 14 models
    4909 selected 
    4910 
    4911 > select up
    4912 
    4913 832004 atoms, 892102 bonds, 19145 pseudobonds, 69617 residues, 14 models
    4914 selected 
    4915 
    4916 > select clear
    4917 
    4918 > show #!58 models
    4919 
    4920 > hide #!59 models
    4921 
    4922 > select /S*
    4923 
    4924 33308 atoms, 33872 bonds, 2 pseudobonds, 4218 residues, 4 models selected 
    4925 
    4926 > select /1-31
    4927 
    4928 465091 atoms, 515513 bonds, 17375 pseudobonds, 25662 residues, 14 models
    4929 selected 
    4930 
    4931 > select /S*
    4932 
    4933 33308 atoms, 33872 bonds, 2 pseudobonds, 4218 residues, 4 models selected 
    4934 
    4935 > select add /1-31
    4936 
    4937 498399 atoms, 549385 bonds, 17377 pseudobonds, 29880 residues, 14 models
    4938 selected 
    4939 
    4940 > select subtract /2S
    4941 
    4942 357483 atoms, 391662 bonds, 12006 pseudobonds, 23291 residues, 14 models
    4943 selected 
    4944 
    4945 > select add /RC
    4946 
    4947 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    4948 selected 
    4949 
    4950 > name frozen ssu sel
    4951 
    4952 > color (#!58 & sel) #fffc79ff
    4953 
    4954 > select ~sel & ##selected
    4955 
    4956 469631 atoms, 495444 bonds, 7139 pseudobonds, 45690 residues, 14 models
    4957 selected 
    4958 
    4959 > color (#!58 & sel) #76d6ffff
    4960 
    4961 > select #58/ET:53
    4962 
    4963 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4964 
    4965 > select add #58/PT:44
    4966 
    4967 45 atoms, 49 bonds, 2 residues, 1 model selected 
    4968 
    4969 > select up
    4970 
    4971 3288 atoms, 3672 bonds, 154 residues, 1 model selected 
    4972 
    4973 > color sel #ff9300ff
    4974 
    4975 > color sel #ff2600ff
    4976 
    4977 > color sel #ff7e79ff
    4978 
    4979 > show #!61 models
    4980 
    4981 > select #61/eEF2:370
    4982 
    4983 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4984 
    4985 > select up
    4986 
    4987 65 atoms, 64 bonds, 9 residues, 1 model selected 
    4988 
    4989 > select up
    4990 
    4991 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    4992 
    4993 > select ~sel & ##selected
    4994 
    4995 200497 atoms, 215019 bonds, 5069 pseudobonds, 16761 residues, 4 models
    4996 selected 
    4997 
    4998 > hide sel cartoons
    4999 
    5000 > select ~sel & ##selected
    5001 
    5002 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    5003 
    5004 > select add #58
    5005 
    5006 215705 atoms, 231414 bonds, 4513 pseudobonds, 17924 residues, 4 models
    5007 selected 
    5008 
    5009 > show #!1 models
    5010 
    5011 > color zone #1 near sel distance 4
    5012 
    5013 > color zone #1 near sel distance 8
    5014 
    5015 [Repeated 1 time(s)]
    5016 
    5017 > color zone #1 near #61 distance 8
    5018 
    5019 > color zone #1 near sel distance 8
    5020 
    5021 > color zone #1 near sel distance 20
    5022 
    5023 [Repeated 1 time(s)]
    5024 
    5025 > select clear
    5026 
    5027 > select #58/PT:20
    5028 
    5029 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5030 
    5031 > select add #58/ET:44
    5032 
    5033 45 atoms, 49 bonds, 2 residues, 1 model selected 
    5034 
    5035 > select up
    5036 
    5037 3288 atoms, 3672 bonds, 154 residues, 1 model selected 
    5038 
    5039 > select up
    5040 
    5041 209136 atoms, 224719 bonds, 17082 residues, 1 model selected 
    5042 
    5043 > select down
    5044 
    5045 3288 atoms, 3672 bonds, 154 residues, 1 model selected 
    5046 
    5047 > color sel #ff2600ff
    5048 
    5049 > color zone #1 near sel distance 20
    5050 
    5051 Drag select of 17872 residues, 10 pseudobonds, 1
    5052 MultiPostProcessor_PPout_9.mrc 
    5053 
    5054 > color zone #1 near sel distance 20
    5055 
    5056 > select #1
    5057 
    5058 2 models selected 
    5059 
    5060 > select #58/ET:45
    5061 
    5062 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5063 
    5064 > select add #58/PT:23
    5065 
    5066 45 atoms, 49 bonds, 2 residues, 1 model selected 
    5067 
    5068 > select up
    5069 
    5070 3288 atoms, 3672 bonds, 154 residues, 1 model selected 
    5071 
    5072 > select up
    5073 
    5074 209136 atoms, 224719 bonds, 17082 residues, 1 model selected 
    5075 
    5076 > select down
    5077 
    5078 3288 atoms, 3672 bonds, 154 residues, 1 model selected 
    5079 
    5080 > color sel #ff9300ff
    5081 
    5082 > color sel orange red
    5083 
    5084 Drag select of 17870 residues, 11 pseudobonds, 1
    5085 MultiPostProcessor_PPout_9.mrc 
    5086 
    5087 > color zone #1 near sel distance 20
    5088 
    5089 Drag select of 17924 residues, 11 pseudobonds, 1
    5090 MultiPostProcessor_PPout_9.mrc 
    5091 
    5092 > select add #58
    5093 
    5094 215705 atoms, 224719 bonds, 4513 pseudobonds, 17924 residues, 6 models
    5095 selected 
    5096 
    5097 > select subtract #58
    5098 
    5099 6569 atoms, 842 residues, 3 models selected 
    5100 
    5101 > select add #58
    5102 
    5103 215705 atoms, 224719 bonds, 4513 pseudobonds, 17924 residues, 6 models
    5104 selected 
    5105 
    5106 > color zone #1 near sel distance 20
    5107 
    5108 > hide #!58 models
    5109 
    5110 > hide #!61 models
    5111 
    5112 > color zone #1 near sel distance 18
    5113 
    5114 [Repeated 1 time(s)]
    5115 
    5116 > color zone #1 near sel distance 12
    5117 
    5118 [Repeated 1 time(s)]
    5119 
    5120 > set bgColor white
    5121 
    5122 > volume splitbyzone #1
    5123 
    5124 Opened MultiPostProcessor_PPout_9.mrc 0 as #2.1, grid size 128,128,128, pixel
    5125 4, shown at level 0.7, step 1, values float32 
    5126 Opened MultiPostProcessor_PPout_9.mrc 1 as #2.2, grid size 128,128,128, pixel
    5127 4, shown at level 0.7, step 1, values float32 
    5128 Opened MultiPostProcessor_PPout_9.mrc 2 as #2.3, grid size 128,128,128, pixel
    5129 4, shown at level 0.7, step 1, values float32 
    5130 Opened MultiPostProcessor_PPout_9.mrc 3 as #2.4, grid size 128,128,128, pixel
    5131 4, shown at level 0.7, step 1, values float32 
    5132 Opened MultiPostProcessor_PPout_9.mrc 4 as #2.5, grid size 128,128,128, pixel
    5133 4, shown at level 0.7, step 1, values float32 
    5134 
    5135 > hide #!2.1 models
    5136 
    5137 > save /Users/campbell/Desktop/Chimera_sessions/subunit_colouring.cxs
    5138 > includeMaps true
    5139 
    5140 ——— End of log from Wed Sep 11 21:36:06 2024 ———
    5141 
    5142 opened ChimeraX session 
    5143 
    5144 > open
    5145 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/62_tRNA_AP_T4_correctedmask/3/MultiPostProcessor_PPout_3.mrc
    5146 
    5147 Opened MultiPostProcessor_PPout_3.mrc as #3, grid size 128,128,128, pixel 4,
    5148 shown at level 0.886, step 1, values float32 
    5149 
    5150 > open
    5151 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/62_tRNA_AP_T4_correctedmask/6/MultiPostProcessor_PPout_6.mrc
    5152 
    5153 Opened MultiPostProcessor_PPout_6.mrc as #4, grid size 128,128,128, pixel 4,
    5154 shown at level 0.923, step 1, values float32 
    5155 
    5156 > open
    5157 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/62_tRNA_AP_T4_correctedmask/7/MultiPostProcessor_PPout_7.mrc
    5158 
    5159 Opened MultiPostProcessor_PPout_7.mrc as #5, grid size 128,128,128, pixel 4,
    5160 shown at level 0.918, step 1, values float32 
    5161 
    5162 > volume #3-5 level 0.6
    5163 
    5164 > fitmap #3-5 inMap #50 eachModel true
    5165 
    5166 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 60646
    5167 points 
    5168 correlation = 0.7983, correlation about mean = 0.3571, overlap = 2.908e+04 
    5169 steps = 120, shift = 0.621, angle = 1.04 degrees 
    5170  
    5171 Position of MultiPostProcessor_PPout_3.mrc (#3) relative to Stable_60S.mrc
    5172 (#50) coordinates: 
    5173 Matrix rotation and translation 
    5174 0.99990950 -0.00801887 -0.01080191 4.09340242 
    5175 0.00788770 0.99989530 -0.01213160 0.88692242 
    5176 0.01089807 0.01204530 0.99986806 -5.71180785 
    5177 Axis 0.66838290 -0.59990699 0.43974526 
    5178 Axis point 0.00000000 463.54507836 53.88459659 
    5179 Rotation angle (degrees) 1.03631485 
    5180 Shift along axis -0.30785120 
    5181  
    5182 Fit map MultiPostProcessor_PPout_6.mrc in map Stable_60S.mrc using 59716
    5183 points 
    5184 correlation = 0.7946, correlation about mean = 0.3491, overlap = 2.996e+04 
    5185 steps = 64, shift = 0.659, angle = 0.882 degrees 
    5186  
    5187 Position of MultiPostProcessor_PPout_6.mrc (#4) relative to Stable_60S.mrc
    5188 (#50) coordinates: 
    5189 Matrix rotation and translation 
    5190 0.99988156 0.01401975 0.00634933 -4.94155467 
    5191 -0.01401930 0.99990172 -0.00011535 3.06447694 
    5192 -0.00635033 0.00002632 0.99997984 1.08175760 
    5193 Axis 0.00460240 0.41257678 -0.91091120 
    5194 Axis point 208.56607079 354.31707192 0.00000000 
    5195 Rotation angle (degrees) 0.88185467 
    5196 Shift along axis 0.25620390 
    5197  
    5198 Fit map MultiPostProcessor_PPout_7.mrc in map Stable_60S.mrc using 58821
    5199 points 
    5200 correlation = 0.7948, correlation about mean = 0.3368, overlap = 2.98e+04 
    5201 steps = 96, shift = 0.848, angle = 0.703 degrees 
    5202  
    5203 Position of MultiPostProcessor_PPout_7.mrc (#5) relative to Stable_60S.mrc
    5204 (#50) coordinates: 
    5205 Matrix rotation and translation 
    5206 0.99995627 -0.00536984 0.00765621 -0.35623266 
    5207 0.00530892 0.99995426 0.00795550 -2.56661137 
    5208 -0.00769858 -0.00791450 0.99993904 3.43286921 
    5209 Axis -0.64699433 0.62599028 0.43535561 
    5210 Axis point 0.00000000 424.65998949 334.37315311 
    5211 Rotation angle (degrees) 0.70271639 
    5212 Shift along axis 0.11832559 
    5213  
    5214 
    5215 > hide #!2 models
    5216 
    5217 > hide #!2.2 models
    5218 
    5219 > show #!2.2 models
    5220 
    5221 > hide #!2 models
    5222 
    5223 > show #!2.1 models
    5224 
    5225 > hide #!2 models
    5226 
    5227 > show #!2 models
    5228 
    5229 > hide #!2 models
    5230 
    5231 > show #!58 models
    5232 
    5233 > hide #!3 models
    5234 
    5235 > hide #!4 models
    5236 
    5237 > hide #!5 models
    5238 
    5239 > hide #!58 models
    5240 
    5241 > show #!59 models
    5242 
    5243 > select subtract #58
    5244 
    5245 6569 atoms, 842 residues, 1 model selected 
    5246 
    5247 > select add #59
    5248 
    5249 214320 atoms, 223107 bonds, 4428 pseudobonds, 17906 residues, 4 models
    5250 selected 
    5251 
    5252 > select clear
    5253 
    5254 > select #59/2S:2253
    5255 
    5256 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5257 
    5258 > select add #59/PT:28
    5259 
    5260 43 atoms, 46 bonds, 2 residues, 1 model selected 
    5261 
    5262 > select up
    5263 
    5264 71944 atoms, 80521 bonds, 3364 residues, 1 model selected 
    5265 
    5266 > show #!60 models
    5267 
    5268 > hide #!59 models
    5269 
    5270 > show #!61 models
    5271 
    5272 > hide #!60 models
    5273 
    5274 > select add #61
    5275 
    5276 279010 atoms, 302235 bonds, 5069 pseudobonds, 20967 residues, 5 models
    5277 selected 
    5278 
    5279 > show sel & #!61 cartoons
    5280 
    5281 > show #!60 models
    5282 
    5283 > hide #!61 models
    5284 
    5285 > select add #60
    5286 
    5287 487061 atoms, 524797 bonds, 10204 pseudobonds, 38835 residues, 9 models
    5288 selected 
    5289 
    5290 > show sel & #!60 cartoons
    5291 
    5292 > select #60/25S:2477
    5293 
    5294 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5295 
    5296 > close #51-57
    5297 
    5298 > close #2
    5299 
    5300 > show #!50 models
    5301 
    5302 > hide #!50 models
    5303 
    5304 > show #!50 models
    5305 
    5306 > open 5lzs
    5307 
    5308 5lzs title: 
    5309 Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA,
    5310 eEF1A, and didemnin B [more info...] 
    5311  
    5312 Chain information for 5lzs #2 
    5313 --- 
    5314 Chain | Description | UniProt 
    5315 2 ii | tRNA |   
    5316 3 | E-site tRNA |   
    5317 5 | 28S ribosomal RNA |   
    5318 7 | 5S ribosomal RNA |   
    5319 8 | 5.8S ribosomal RNA |   
    5320 9 | 18S ribosomal RNA |   
    5321 A | uL2 | G1TT27_RABIT 1-257 
    5322 AA | uS2 |   
    5323 B | uL3 | G1TL06_RABIT 2-403 
    5324 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    5325 C | uL4 | G1SVW5_RABIT 1-378 
    5326 CC | uS5 |   
    5327 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    5328 DD | uS4 | G1TNM3_RABIT 1-243 
    5329 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    5330 EE | 40S ribosomal protein S4 |   
    5331 F | uL30 | G1TUB1_RABIT 1-247 
    5332 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    5333 G | eL8 | G1STW0_RABIT 78-319 
    5334 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    5335 H | uL6 | G1TX33_RABIT 1-192 
    5336 HH | uS7 | G1SVB0_RABIT 1-194 
    5337 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    5338 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    5339 J | uL5 | G1TUB8_RABIT 1-178 
    5340 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    5341 KK | eS10 | G1TPV3_RABIT 1-165 
    5342 L | eL13 |   
    5343 LL | uS17 | G1TRM4_RABIT 1-158 
    5344 M | eL14 | G1SZ12_RABIT 1-218 
    5345 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    5346 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    5347 NN | uS15 | G1SP51_RABIT 1-151 
    5348 O | uL13 |   
    5349 OO | uS11 | G1T1F0_RABIT -4-151 
    5350 P | uL22 | G1TVT6_RABIT 1-184 
    5351 PP | uS19 | G1U0Q2_RABIT 1-145 
    5352 Q | eL18 |   
    5353 QQ | uS9 | G1SGX4_RABIT 1-146 
    5354 R | eL19 |   
    5355 RR | eS17 | G1TU13_RABIT 1-135 
    5356 S | eL20 |   
    5357 SS | uS13 | G1TPG3_RABIT 1-152 
    5358 T | eL21 | G1SHQ2_RABIT 1-160 
    5359 TT | eS19 | G1TN62_RABIT 1-145 
    5360 U | eL22 |   
    5361 UU | uS10 | G1SIZ2_RABIT 1-119 
    5362 V | uL14 | G1T6D1_RABIT 1-140 
    5363 VV | eS21 |   
    5364 W | uL24 | G1SE28_RABIT 1-157 
    5365 WW | uS8 | G1TG89_RABIT 1-130 
    5366 X | uL23 | G1SE76_RABIT 1-156 
    5367 XX | uS12 |   
    5368 Y | uL24 | G1SQH0_RABIT 1-145 
    5369 YY | eS24 |   
    5370 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    5371 ZZ | eS25 | G1TDB3_RABIT 1-125 
    5372 a | uL15 | G1SNY0_RABIT 1-148 
    5373 aa | eS26 |   
    5374 b | eL29 | G1SGR6_RABIT 1-226 
    5375 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    5376 c | eL30 | G1TDL2_RABIT 1-115 
    5377 cc | eS28 | G1TIB4_RABIT 1-69 
    5378 d | eL31 | G1SHG0_RABIT 1-125 
    5379 dd | uS14 | G1U7M4_RABIT 1-56 
    5380 e | eL32 | G1U437_RABIT 1-135 
    5381 ee | eS30 | G1T8A2_RABIT 0-132 
    5382 f | eL33 | G1SF08_RABIT 1-110 
    5383 ff | eS31 | G1SK22_RABIT 1-156 
    5384 g | eL34 | G1U945_RABIT 1-116 
    5385 gg | RACK1 | G1SJB4_RABIT 1-317 
    5386 h | uL29 | G1SIT5_RABIT 1-123 
    5387 hh | mRNA |   
    5388 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    5389 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    5390 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    5391 k | eL38 |   
    5392 l | eL39 | G1TTN1_RABIT 1-51 
    5393 m | eL40 |   
    5394 n | 60s ribosomal protein l41 |   
    5395 o | eL42 | G1U344_RABIT 1-106 
    5396 p | eL43 | G1SY53_RABIT 1-92 
    5397 r | eL28 | G1U7L1_RABIT 1-137 
    5398 s | uL10 |   
    5399 t | uL11 | G1SMR7_RABIT 1-165 
    5400  
    5401 Non-standard residues in 5lzs #2 
    5402 --- 
    5403 7C4 —
    5404 (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-
    5405 pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide 
    5406 GDP — guanosine-5'-diphosphate 
    5407 MG — magnesium ion 
    5408 ZN — zinc ion 
    5409  
    5410 
    5411 > hide #!60 models
    5412 
    5413 > select #2/BB:230@CG
    5414 
    5415 1 atom, 1 residue, 1 model selected 
    5416 
    5417 > ui mousemode right "translate selected models"
    5418 
    5419 > view matrix models #2,1,0,0,80.376,0,1,0,51.305,0,0,1,17.379
    5420 
    5421 > hide sel atoms
    5422 
    5423 > show sel cartoons
    5424 
    5425 > select up
    5426 
    5427 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5428 
    5429 > select up
    5430 
    5431 73 atoms, 73 bonds, 9 residues, 1 model selected 
    5432 
    5433 > select up
    5434 
    5435 1729 atoms, 1756 bonds, 213 residues, 1 model selected 
    5436 
    5437 > select up
    5438 
    5439 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    5440 
    5441 > select up
    5442 
    5443 1052938 atoms, 1129054 bonds, 87803 residues, 15 models selected 
    5444 
    5445 > select down
    5446 
    5447 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    5448 
    5449 > hide sel atoms
    5450 
    5451 > show sel cartoons
    5452 
    5453 > view matrix models
    5454 > #2,0.41695,0.69159,0.58979,-137.31,-0.038035,0.66159,-0.7489,370.5,-0.90813,0.28982,0.30216,363.09
    5455 
    5456 > view matrix models
    5457 > #2,0.41695,0.69159,0.58979,-169.89,-0.038035,0.66159,-0.7489,325.57,-0.90813,0.28982,0.30216,374.66
    5458 
    5459 > view matrix models
    5460 > #2,-0.095311,-0.51285,-0.85317,718.77,-0.94128,0.32531,-0.090391,469.37,0.3239,0.79446,-0.51374,141.94
    5461 
    5462 > view matrix models
    5463 > #2,-0.095311,-0.51285,-0.85317,845.1,-0.94128,0.32531,-0.090391,600.94,0.3239,0.79446,-0.51374,126.58
    5464 
    5465 > view matrix models
    5466 > #2,-0.095311,-0.51285,-0.85317,816.92,-0.94128,0.32531,-0.090391,597.33,0.3239,0.79446,-0.51374,112.2
    5467 
    5468 > view matrix models
    5469 > #2,-0.16685,-0.05941,-0.98419,740.32,-0.57495,-0.80504,0.14607,765.47,-0.80099,0.59023,0.10016,287.03
    5470 
    5471 > view matrix models
    5472 > #2,-0.76725,-0.03844,-0.6402,791.22,-0.4463,-0.68487,0.57599,576.27,-0.46059,0.72765,0.50831,44.642
    5473 
    5474 > view matrix models
    5475 > #2,-0.9867,-0.0032728,-0.16249,702.57,-0.14017,-0.48892,0.86099,360.38,-0.082264,0.87232,0.48196,-87.053
    5476 
    5477 > view matrix models
    5478 > #2,-0.50714,-0.15757,0.84734,339.66,0.7856,0.31982,0.52967,-18.888,-0.35446,0.93428,-0.038411,111.49
    5479 
    5480 > view matrix models
    5481 > #2,0.42444,0.60141,0.67687,-71.988,0.5063,0.46212,-0.72808,366.05,-0.75067,0.65173,-0.10835,315.03
    5482 
    5483 > view matrix models
    5484 > #2,0.42444,0.60141,0.67687,-227.59,0.5063,0.46212,-0.72808,192.13,-0.75067,0.65173,-0.10835,320.5
    5485 
    5486 > view matrix models
    5487 > #2,0.47291,0.76048,0.44501,-220.91,0.34661,0.30377,-0.88746,324.09,-0.81007,0.57393,-0.11993,361.63
    5488 
    5489 > view matrix models
    5490 > #2,0.47291,0.76048,0.44501,-221.04,0.34661,0.30377,-0.88746,321.55,-0.81007,0.57393,-0.11993,366.79
    5491 
    5492 > fitmap #2 inMap #50
    5493 
    5494 Fit molecule 5lzs (#2) to map Stable_60S.mrc (#50) using 220934 atoms 
    5495 average map value = 0.5098, steps = 184 
    5496 shifted from previous position = 29.4 
    5497 rotated from previous position = 42.7 degrees 
    5498 atoms outside contour = 107640, contour level = 0.6 
    5499  
    5500 Position of 5lzs (#2) relative to Stable_60S.mrc (#50) coordinates: 
    5501 Matrix rotation and translation 
    5502 0.16308926 0.97023782 -0.17899853 -30.30121573 
    5503 0.16359973 -0.20551056 -0.96488369 527.70842311 
    5504 -0.97295273 0.12807806 -0.19224721 533.87612945 
    5505 Axis 0.69464879 0.50460991 -0.51267134 
    5506 Axis point 0.00000000 93.04956583 445.54572911 
    5507 Rotation angle (degrees) 128.12172776 
    5508 Shift along axis -28.46479848 
    5509  
    5510 
    5511 > select clear
    5512 
    5513 > log metadata #2
    5514 
    5515 Metadata for 5lzs #2 
    5516 --- 
    5517 Title | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B 
    5518 Citations | Shao, S., Murray, J., Brown, A., Taunton, J., Ramakrishnan, V., Hegde, R.S. (2016). Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 1229-1240.e15. PMID: 27863242. DOI: 10.1016/j.cell.2016.10.046 
    5519 Shao, S., Murray, J., Brown, A., Taunton, J., Ramakrishnan, V., Hegde, R.S.
    5520 (?). Decoding mammalian ribosome-mRNA states by translational GTPase
    5521 complexes. To Be Published 
    5522 Non-standard residues | 7C4 — (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide 
    5523 GDP — guanosine-5'-diphosphate 
    5524 MG — magnesium ion 
    5525 ZN — zinc ion 
    5526 Source (natural) | Oryctolagus cuniculus (rabbit) 
    5527 CryoEM Map | EMDB 4130 — open map 
    5528 Experimental method | Electron microscopy 
    5529 Resolution | 3.31Å 
    5530  
    5531 > log chains #2
    5532 
    5533 Chain information for 5lzs #2 
    5534 --- 
    5535 Chain | Description | UniProt 
    5536 2 ii | tRNA |   
    5537 3 | E-site tRNA |   
    5538 5 | 28S ribosomal RNA |   
    5539 7 | 5S ribosomal RNA |   
    5540 8 | 5.8S ribosomal RNA |   
    5541 9 | 18S ribosomal RNA |   
    5542 A | uL2 | G1TT27_RABIT 1-257 
    5543 AA | uS2 |   
    5544 B | uL3 | G1TL06_RABIT 2-403 
    5545 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    5546 C | uL4 | G1SVW5_RABIT 1-378 
    5547 CC | uS5 |   
    5548 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    5549 DD | uS4 | G1TNM3_RABIT 1-243 
    5550 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    5551 EE | 40S ribosomal protein S4 |   
    5552 F | uL30 | G1TUB1_RABIT 1-247 
    5553 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    5554 G | eL8 | G1STW0_RABIT 78-319 
    5555 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    5556 H | uL6 | G1TX33_RABIT 1-192 
    5557 HH | uS7 | G1SVB0_RABIT 1-194 
    5558 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    5559 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    5560 J | uL5 | G1TUB8_RABIT 1-178 
    5561 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    5562 KK | eS10 | G1TPV3_RABIT 1-165 
    5563 L | eL13 |   
    5564 LL | uS17 | G1TRM4_RABIT 1-158 
    5565 M | eL14 | G1SZ12_RABIT 1-218 
    5566 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    5567 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    5568 NN | uS15 | G1SP51_RABIT 1-151 
    5569 O | uL13 |   
    5570 OO | uS11 | G1T1F0_RABIT -4-151 
    5571 P | uL22 | G1TVT6_RABIT 1-184 
    5572 PP | uS19 | G1U0Q2_RABIT 1-145 
    5573 Q | eL18 |   
    5574 QQ | uS9 | G1SGX4_RABIT 1-146 
    5575 R | eL19 |   
    5576 RR | eS17 | G1TU13_RABIT 1-135 
    5577 S | eL20 |   
    5578 SS | uS13 | G1TPG3_RABIT 1-152 
    5579 T | eL21 | G1SHQ2_RABIT 1-160 
    5580 TT | eS19 | G1TN62_RABIT 1-145 
    5581 U | eL22 |   
    5582 UU | uS10 | G1SIZ2_RABIT 1-119 
    5583 V | uL14 | G1T6D1_RABIT 1-140 
    5584 VV | eS21 |   
    5585 W | uL24 | G1SE28_RABIT 1-157 
    5586 WW | uS8 | G1TG89_RABIT 1-130 
    5587 X | uL23 | G1SE76_RABIT 1-156 
    5588 XX | uS12 |   
    5589 Y | uL24 | G1SQH0_RABIT 1-145 
    5590 YY | eS24 |   
    5591 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    5592 ZZ | eS25 | G1TDB3_RABIT 1-125 
    5593 a | uL15 | G1SNY0_RABIT 1-148 
    5594 aa | eS26 |   
    5595 b | eL29 | G1SGR6_RABIT 1-226 
    5596 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    5597 c | eL30 | G1TDL2_RABIT 1-115 
    5598 cc | eS28 | G1TIB4_RABIT 1-69 
    5599 d | eL31 | G1SHG0_RABIT 1-125 
    5600 dd | uS14 | G1U7M4_RABIT 1-56 
    5601 e | eL32 | G1U437_RABIT 1-135 
    5602 ee | eS30 | G1T8A2_RABIT 0-132 
    5603 f | eL33 | G1SF08_RABIT 1-110 
    5604 ff | eS31 | G1SK22_RABIT 1-156 
    5605 g | eL34 | G1U945_RABIT 1-116 
    5606 gg | RACK1 | G1SJB4_RABIT 1-317 
    5607 h | uL29 | G1SIT5_RABIT 1-123 
    5608 hh | mRNA |   
    5609 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    5610 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    5611 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    5612 k | eL38 |   
    5613 l | eL39 | G1TTN1_RABIT 1-51 
    5614 m | eL40 |   
    5615 n | 60s ribosomal protein l41 |   
    5616 o | eL42 | G1U344_RABIT 1-106 
    5617 p | eL43 | G1SY53_RABIT 1-92 
    5618 r | eL28 | G1U7L1_RABIT 1-137 
    5619 s | uL10 |   
    5620 t | uL11 | G1SMR7_RABIT 1-165 
    5621  
    5622 
    5623 > hide #!50 models
    5624 
    5625 > show #!50 models
    5626 
    5627 > hide #!50 models
    5628 
    5629 Drag select of 7177 residues, 4 pseudobonds 
    5630 
    5631 > select up
    5632 
    5633 123617 atoms, 134235 bonds, 4 pseudobonds, 8832 residues, 2 models selected 
    5634 
    5635 > select up
    5636 
    5637 130885 atoms, 141645 bonds, 4 pseudobonds, 9737 residues, 2 models selected 
    5638 
    5639 > select #2/W:107
    5640 
    5641 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5642 
    5643 > undo
    5644 
    5645 > select add #2/W:104
    5646 
    5647 130894 atoms, 141653 bonds, 4 pseudobonds, 9738 residues, 2 models selected 
    5648 
    5649 > select add #2/p:85
    5650 
    5651 130905 atoms, 141663 bonds, 4 pseudobonds, 9739 residues, 2 models selected 
    5652 
    5653 > select up
    5654 
    5655 131257 atoms, 142014 bonds, 4 pseudobonds, 9785 residues, 2 models selected 
    5656 
    5657 > select up
    5658 
    5659 131986 atoms, 142756 bonds, 4 pseudobonds, 9880 residues, 2 models selected 
    5660 
    5661 > select up
    5662 
    5663 132017 atoms, 142786 bonds, 4 pseudobonds, 9884 residues, 2 models selected 
    5664 
    5665 > select up
    5666 
    5667 132514 atoms, 143297 bonds, 4 pseudobonds, 9943 residues, 2 models selected 
    5668 
    5669 > select up
    5670 
    5671 132723 atoms, 143297 bonds, 4 pseudobonds, 10152 residues, 2 models selected 
    5672 
    5673 > select up
    5674 
    5675 220934 atoms, 236952 bonds, 22 pseudobonds, 18186 residues, 2 models selected 
    5676 
    5677 > select down
    5678 
    5679 132723 atoms, 143297 bonds, 4 pseudobonds, 10152 residues, 2 models selected 
    5680 
    5681 > select add #2/c:37
    5682 
    5683 132731 atoms, 143304 bonds, 4 pseudobonds, 10153 residues, 2 models selected 
    5684 
    5685 > select add #2/A:139
    5686 
    5687 132741 atoms, 143314 bonds, 4 pseudobonds, 10154 residues, 2 models selected 
    5688 
    5689 > select up
    5690 
    5691 132871 atoms, 143445 bonds, 4 pseudobonds, 10171 residues, 2 models selected 
    5692 
    5693 > select up
    5694 
    5695 135382 atoms, 146004 bonds, 4 pseudobonds, 10498 residues, 2 models selected 
    5696 
    5697 > select add #2/Z:113
    5698 
    5699 135391 atoms, 146012 bonds, 4 pseudobonds, 10499 residues, 2 models selected 
    5700 
    5701 > select up
    5702 
    5703 135577 atoms, 146201 bonds, 4 pseudobonds, 10521 residues, 2 models selected 
    5704 
    5705 > select up
    5706 
    5707 136489 atoms, 147134 bonds, 4 pseudobonds, 10633 residues, 2 models selected 
    5708 
    5709 > select down
    5710 
    5711 135577 atoms, 146201 bonds, 4 pseudobonds, 10521 residues, 2 models selected 
    5712 
    5713 > select up
    5714 
    5715 136489 atoms, 147134 bonds, 4 pseudobonds, 10633 residues, 2 models selected 
    5716 
    5717 > select ~sel & ##selected
    5718 
    5719 84445 atoms, 89818 bonds, 1855 pseudobonds, 7553 residues, 4 models selected 
    5720 
    5721 > select subtract /t
    5722 
    5723 83285 atoms, 88644 bonds, 1855 pseudobonds, 7400 residues, 4 models selected 
    5724 
    5725 > select subtract /V
    5726 
    5727 82250 atoms, 87596 bonds, 1854 pseudobonds, 7260 residues, 4 models selected 
    5728 
    5729 > color (#!2 & sel) #fffc79ff
    5730 
    5731 > select ~sel & ##selected
    5732 
    5733 138684 atoms, 149356 bonds, 4033 pseudobonds, 10926 residues, 4 models
    5734 selected 
    5735 
    5736 > color (#!2 & sel) #76d6ffff
    5737 
    5738 > select #2/jj:179
    5739 
    5740 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5741 
    5742 > select up
    5743 
    5744 172 atoms, 173 bonds, 20 residues, 1 model selected 
    5745 
    5746 > select up
    5747 
    5748 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    5749 
    5750 > select up
    5751 
    5752 3491 atoms, 3565 bonds, 444 residues, 1 model selected 
    5753 
    5754 > color sel forest green
    5755 
    5756 > select #2/ii:45
    5757 
    5758 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5759 
    5760 > select add #2/2:51
    5761 
    5762 42 atoms, 45 bonds, 2 residues, 1 model selected 
    5763 
    5764 > select add #2/3:53
    5765 
    5766 65 atoms, 70 bonds, 3 residues, 1 model selected 
    5767 
    5768 > select up
    5769 
    5770 4825 atoms, 5391 bonds, 227 residues, 1 model selected 
    5771 
    5772 > select up
    5773 
    5774 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    5775 
    5776 > select down
    5777 
    5778 4825 atoms, 5391 bonds, 227 residues, 1 model selected 
    5779 
    5780 > color sel orange red
    5781 
    5782 > show #!4 models
    5783 
    5784 > ui tool show "Color Zone"
    5785 
    5786 > color zone #4 near #2 distance 8
    5787 
    5788 > show #!58 models
    5789 
    5790 > select #58/2S:2470
    5791 
    5792 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5793 
    5794 > select #58/2S:2467
    5795 
    5796 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5797 
    5798 > select #58/2S:2479
    5799 
    5800 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5801 
    5802 > select add #58/L1:70
    5803 
    5804 28 atoms, 28 bonds, 2 residues, 1 model selected 
    5805 
    5806 > select up
    5807 
    5808 71578 atoms, 80017 bonds, 3424 residues, 1 model selected 
    5809 
    5810 > select up
    5811 
    5812 72225 atoms, 80672 bonds, 3506 residues, 1 model selected 
    5813 
    5814 > color zone #4 near sel distance 8
    5815 
    5816 > select 5lzs
    5817 
    5818 Expected an objects specifier or a keyword 
    5819 
    5820 > select #2
    5821 
    5822 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    5823 selected 
    5824 
    5825 > select add #2
    5826 
    5827 293159 atoms, 317624 bonds, 5887 pseudobonds, 21692 residues, 5 models
    5828 selected 
    5829 
    5830 > select subtract #2/3
    5831 
    5832 291566 atoms, 315845 bonds, 5821 pseudobonds, 21617 residues, 5 models
    5833 selected 
    5834 
    5835 > color zone #4 near sel distance 8
    5836 
    5837 [Repeated 1 time(s)]
    5838 
    5839 > select add #58/ET:53
    5840 
    5841 291589 atoms, 315870 bonds, 5821 pseudobonds, 21618 residues, 7 models
    5842 selected 
    5843 
    5844 > select up
    5845 
    5846 293210 atoms, 317681 bonds, 5821 pseudobonds, 21694 residues, 7 models
    5847 selected 
    5848 
    5849 > select up
    5850 
    5851 430070 atoms, 461671 bonds, 5887 pseudobonds, 35268 residues, 7 models
    5852 selected 
    5853 
    5854 > color zone #4 near sel distance 8
    5855 
    5856 > lighting flat
    5857 
    5858 > lighting simple
    5859 
    5860 > lighting full
    5861 
    5862 > select #2/3:26
    5863 
    5864 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5865 
    5866 > select add #58/ET:28
    5867 
    5868 42 atoms, 45 bonds, 2 residues, 2 models selected 
    5869 
    5870 > select up
    5871 
    5872 3237 atoms, 3615 bonds, 152 residues, 2 models selected 
    5873 
    5874 > select up
    5875 
    5876 430070 atoms, 461671 bonds, 35268 residues, 2 models selected 
    5877 
    5878 > select up
    5879 
    5880 1052938 atoms, 1129054 bonds, 87803 residues, 15 models selected 
    5881 
    5882 > select down
    5883 
    5884 430070 atoms, 461671 bonds, 35268 residues, 2 models selected 
    5885 
    5886 > select down
    5887 
    5888 3237 atoms, 3615 bonds, 152 residues, 2 models selected 
    5889 
    5890 > color sel #73fdffff
    5891 
    5892 > color sel #76d6ffff
    5893 
    5894 > select up
    5895 
    5896 430070 atoms, 461671 bonds, 35268 residues, 2 models selected 
    5897 
    5898 > select up
    5899 
    5900 1052938 atoms, 1129054 bonds, 87803 residues, 15 models selected 
    5901 
    5902 > select up
    5903 
    5904 1052938 atoms, 1129054 bonds, 87803 residues, 15 models selected 
    5905 
    5906 > color zone #4 near sel distance 8
    5907 
    5908 > select down
    5909 
    5910 430070 atoms, 461671 bonds, 35268 residues, 2 models selected 
    5911 
    5912 > color zone #4 near sel distance 8
    5913 
    5914 > hide #!4 models
    5915 
    5916 > show #!4 models
    5917 
    5918 > hide #!58 models
    5919 
    5920 > hide #!2 models
    5921 
    5922 > lighting soft
    5923 
    5924 > save /Users/campbell/Desktop/image2.png supersample 3
    5925 
    5926 > hide #!4 models
    5927 
    5928 > show #!5 models
    5929 
    5930 > open 6tnu
    5931 
    5932 6tnu title: 
    5933 Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
    5934 [more info...] 
    5935  
    5936 Chain information for 6tnu #6 
    5937 --- 
    5938 Chain | Description | UniProt 
    5939 2 | 18S rRNA |   
    5940 A | 40S ribosomal protein S3 | RS3_YEAST 4-225 
    5941 AA | 60S ribosomal protein L8-A | RL8A_YEAST 24-256 
    5942 AB | 60S ribosomal protein L23-A | RL23A_YEAST 2-137 
    5943 AC | 60S ribosomal protein L36-A | RL36A_YEAST 2-100 
    5944 AD | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    5945 AE | 60S ribosomal protein L24-A | RL24A_YEAST 1-126 
    5946 AF | 60S ribosomal protein L37-A | RL37A_YEAST 2-82 
    5947 AG | 60S ribosomal protein L11-B | RL11B_YEAST 6-174 
    5948 AH | 60S ribosomal protein L25 | RL25_YEAST 22-142 
    5949 AI | 60S ribosomal protein L38 | RL38_YEAST 2-78 
    5950 AJ | 60S ribosomal protein L13-A | RL13A_YEAST 2-194 
    5951 AK | 60S ribosomal protein L26-A | RL26A_YEAST 2-126 
    5952 AL | 60S ribosomal protein L39 | RL39_YEAST 2-51 
    5953 AM | 60S ribosomal protein L14-A | RL14A_YEAST 3-138 
    5954 AN | 60S ribosomal protein L27-A | RL27A_YEAST 2-136 
    5955 AO | Ubiquitin-60S ribosomal protein L40 | RL40A_YEAST 77-128 
    5956 AP | 60S ribosomal protein L42-A | RL44A_YEAST 2-104 
    5957 AQ | 60S ribosomal protein L15-A | RL15A_YEAST 2-204 
    5958 AR | 60S ribosomal protein L28 | RL28_YEAST 2-149 
    5959 AS | 60S ribosomal protein L41-A |   
    5960 AT | 60S ribosomal protein L43-A | RL43A_YEAST 2-92 
    5961 AU | 60S ribosomal protein L16-A | RL16A_YEAST 3-199 
    5962 AV | 60S ribosomal protein L29 | RL29_YEAST 2-59 
    5963 AW | 60S ribosomal protein L2-A | RL2A_YEAST 2-252 
    5964 AX | 60S ribosomal protein L17-A | RL17A_YEAST 2-184 
    5965 AY | 60S ribosomal protein L30 | RL30_YEAST 9-104 
    5966 B | Rps5p | A0A1L4AA68_YEASX 20-225 
    5967 BA | 60S ribosomal protein L3 | RL3_YEAST 2-387 
    5968 BB | 60S ribosomal protein L18-A | RL18A_YEAST 2-186 
    5969 BC | 60S ribosomal protein L31-A | RL31A_YEAST 4-112 
    5970 BD | 60S ribosomal protein L10 | RL10_YEAST 2-219 
    5971 BE | 60S ribosomal protein L4-A | RL4A_YEAST 2-362 
    5972 BF | 60S ribosomal protein L19-A | RL19A_YEAST 2-189 
    5973 BG | 60S ribosomal protein L32 | RL32_YEAST 2-128 
    5974 BH | 60S ribosomal protein L20-A | RL20A_YEAST 2-172 
    5975 BI | 60S ribosomal protein L5 | RL5_YEAST 4-297 
    5976 BJ | 60S ribosomal protein L21-A | RL21A_YEAST 2-160 
    5977 BK | 60S ribosomal protein L33-A | RL33A_YEAST 2-107 
    5978 BL | 60S ribosomal protein L22-A | RL22A_YEAST 9-108 
    5979 BM | 60S ribosomal protein L6-B | RL6B_YEAST 2-176 
    5980 BN | 60S ribosomal protein L34-A | RL34A_YEAST 2-113 
    5981 BO | 60S ribosomal protein L7-A | RL7A_YEAST 23-244 
    5982 BP | 60S ribosomal protein L35-A | RL35A_YEAST 2-120 
    5983 BQ | 25S rRNA |   
    5984 BR | 5S rRNA |   
    5985 BS | 5.8S rRNA |   
    5986 BT | 60S ribosomal protein L1 |   
    5987 C | 40S ribosomal protein S10-A | RS10A_YEAST 1-92 
    5988 D | 40S ribosomal protein S12 | RS12_YEAST 23-143 
    5989 E | 40S ribosomal protein S15 | RS15_YEAST 13-129 
    5990 F | 40S ribosomal protein S16-A | RS16A_YEAST 3-143 
    5991 G | 40S ribosomal protein S17-B | RS17B_YEAST 2-126 
    5992 H | 40S ribosomal protein S18-A | RS18A_YEAST 2-146 
    5993 I | 40S ribosomal protein S19-A | RS19A_YEAST 2-144 
    5994 J | 40S ribosomal protein S20 | RS20_YEAST 20-119 
    5995 K | 40S ribosomal protein S25-A | RS25A_YEAST 24-105 
    5996 L | 40S ribosomal protein S28-A | RS28A_YEAST 5-67 
    5997 M | 40S ribosomal protein S29-A | RS29A_YEAST 4-56 
    5998 N | Ubiquitin-40S ribosomal protein S31 | RS31_YEAST 80-152 
    5999 O | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 5-316 
    6000 P | 40S ribosomal protein S0-A | RSSA1_YEAS1 2-207 
    6001 Q | 40S ribosomal protein S1-A | RS3A1_YEAS1 2-233 
    6002 R | 40S ribosomal protein S2 | RS2_YEAST 34-249 
    6003 S | 40S ribosomal protein S4-A | RS4A_YEAST 2-259 
    6004 T | 40S ribosomal protein S6-A | RS6A_YEAST 1-228 
    6005 U | 40S ribosomal protein S7-A | RS7A_YEAST 4-187 
    6006 V | 40S ribosomal protein S8 | A0A0J9X221_LACKL 2-199 
    6007 W | 40S ribosomal protein S9-A | RS9A_YEAST 2-185 
    6008 X | 40S ribosomal protein S11-A | RS11A_YEAST 4-145 
    6009 Y | 40S ribosomal protein S13 | RS13_YEAST 2-151 
    6010 Z | 40S ribosomal protein S14-B | RS14B_YEAST 11-137 
    6011 a | 40S ribosomal protein S21-A | RS21A_YEAST 1-87 
    6012 b | 40S ribosomal protein S22-A | RS22A_YEAST 2-130 
    6013 c | 40S ribosomal protein S23-A | RS23A_YEAST 2-145 
    6014 d | 40S ribosomal protein S24-A | RS24A_YEAST 2-135 
    6015 e | 40S ribosomal protein S26-B | RS26B_YEAST 2-98 
    6016 eI | Eukaryotic translation initiation factor 5A-1 | IF5A1_YEAST 4-157 
    6017 f | 40S ribosomal protein S27-A | RS27A_YEAST 2-82 
    6018 g | 40S ribosomal protein S30-A | RS30A_YEAST 2-61 
    6019 l | mRNA |   
    6020 m | A-site tRNA |   
    6021 n | P-site tRNA |   
    6022  
    6023 Non-standard residues in 6tnu #6 
    6024 --- 
    6025 3HE —
    6026 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione 
    6027 SPD — spermidine (N-(2-amino-propyl)-1,4-diaminobutane; Pa(34)) 
    6028 ZN — zinc ion 
    6029  
    6030 1555 atoms have alternate locations. Control/examine alternate locations with
    6031 Altloc Explorer [start tool...] or the altlocs command. 
    6032 
    6033 > select #6/2:821@C4'
    6034 
    6035 1 atom, 1 residue, 1 model selected 
    6036 
    6037 > select up
    6038 
    6039 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6040 
    6041 > select up
    6042 
    6043 37739 atoms, 42211 bonds, 1771 residues, 1 model selected 
    6044 
    6045 > select up
    6046 
    6047 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    6048 
    6049 > hide sel atoms
    6050 
    6051 > show sel cartoons
    6052 
    6053 > view matrix models #6,1,0,0,96.908,0,1,0,55.063,0,0,1,13.276
    6054 
    6055 > view matrix models #6,1,0,0,188.67,0,1,0,110.82,0,0,1,20.101
    6056 
    6057 > view matrix models
    6058 > #6,0.51919,0.85456,0.013246,71.949,-0.22449,0.15131,-0.96266,639.52,-0.82465,0.49683,0.2704,272.76
    6059 
    6060 > view matrix models
    6061 > #6,-0.15462,0.7946,-0.58711,406.1,-0.59319,-0.54989,-0.58801,826.94,-0.79008,0.25735,0.55637,257.28
    6062 
    6063 > view matrix models
    6064 > #6,-0.10716,0.72846,-0.67666,434.9,-0.52992,-0.61769,-0.58106,827.97,-0.84125,0.29631,0.45222,285.58
    6065 
    6066 > view matrix models
    6067 > #6,-0.10716,0.72846,-0.67666,433.12,-0.52992,-0.61769,-0.58106,829.22,-0.84125,0.29631,0.45222,281.74
    6068 
    6069 > view matrix models
    6070 > #6,0.48051,0.87401,-0.072223,95.974,-0.23222,0.047385,-0.97151,673.16,-0.84569,0.48359,0.22573,288.98
    6071 
    6072 > view matrix models
    6073 > #6,0.48051,0.87401,-0.072223,-87.741,-0.23222,0.047385,-0.97151,551.63,-0.84569,0.48359,0.22573,291.04
    6074 
    6075 > fitmap #2 inMap #5
    6076 
    6077 Fit molecule 5lzs (#2) to map MultiPostProcessor_PPout_7.mrc (#5) using 220934
    6078 atoms 
    6079 average map value = 0.773, steps = 48 
    6080 shifted from previous position = 0.922 
    6081 rotated from previous position = 1.34 degrees 
    6082 atoms outside contour = 49177, contour level = 0.6 
    6083  
    6084 Position of 5lzs (#2) relative to MultiPostProcessor_PPout_7.mrc (#5)
    6085 coordinates: 
    6086 Matrix rotation and translation 
    6087 0.16730225 0.97268696 -0.16090383 -37.15841963 
    6088 0.16821694 -0.18897363 -0.96746681 522.61039443 
    6089 -0.97144893 0.13479262 -0.19523814 532.86139906 
    6090 Axis 0.69447790 0.51068346 -0.50685585 
    6091 Axis point 0.00000000 90.90558667 443.77382906 
    6092 Rotation angle (degrees) 127.47785571 
    6093 Shift along axis -29.00113860 
    6094  
    6095 
    6096 > fitmap #2 inMap #5
    6097 
    6098 Fit molecule 5lzs (#2) to map MultiPostProcessor_PPout_7.mrc (#5) using 220934
    6099 atoms 
    6100 average map value = 0.773, steps = 44 
    6101 shifted from previous position = 0.0264 
    6102 rotated from previous position = 0.0106 degrees 
    6103 atoms outside contour = 49182, contour level = 0.6 
    6104  
    6105 Position of 5lzs (#2) relative to MultiPostProcessor_PPout_7.mrc (#5)
    6106 coordinates: 
    6107 Matrix rotation and translation 
    6108 0.16720525 0.97271106 -0.16085897 -37.15793738 
    6109 0.16808242 -0.18889097 -0.96750633 522.62555614 
    6110 -0.97148891 0.13473457 -0.19507919 532.82119064 
    6111 Axis 0.69441772 0.51070124 -0.50692038 
    6112 Axis point 0.00000000 90.89150714 443.79401437 
    6113 Rotation angle (degrees) 127.47263581 
    6114 Shift along axis -28.99553276 
    6115  
    6116 
    6117 > fitmap #6 inMap #5
    6118 
    6119 Fit molecule 6tnu (#6) to map MultiPostProcessor_PPout_7.mrc (#5) using 204962
    6120 atoms 
    6121 average map value = 0.8637, steps = 104 
    6122 shifted from previous position = 6.22 
    6123 rotated from previous position = 21.8 degrees 
    6124 atoms outside contour = 21197, contour level = 0.6 
    6125  
    6126 Position of 6tnu (#6) relative to MultiPostProcessor_PPout_7.mrc (#5)
    6127 coordinates: 
    6128 Matrix rotation and translation 
    6129 0.15782578 0.98738484 0.01273570 -57.14848132 
    6130 -0.11290191 0.03085625 -0.99312691 524.36425700 
    6131 -0.98099143 0.15530314 0.11634755 443.24394993 
    6132 Axis 0.61237488 0.52988297 -0.58670354 
    6133 Axis point 0.00000000 40.79771785 497.35638831 
    6134 Rotation angle (degrees) 110.33357622 
    6135 Shift along axis -17.19739507 
    6136  
    6137 
    6138 > hide #!5 models
    6139 
    6140 Drag select of 6883 residues, 1 pseudobonds 
    6141 
    6142 > select up
    6143 
    6144 114902 atoms, 124769 bonds, 1 pseudobond, 8350 residues, 2 models selected 
    6145 
    6146 > select up
    6147 
    6148 120557 atoms, 130539 bonds, 1 pseudobond, 9057 residues, 2 models selected 
    6149 
    6150 > select #6/BT:143
    6151 
    6152 5 atoms, 4 bonds, 1 residue, 1 model selected 
    6153 
    6154 > select add #6/BT:143
    6155 
    6156 120562 atoms, 130543 bonds, 1 pseudobond, 9058 residues, 2 models selected 
    6157 
    6158 > select up
    6159 
    6160 120617 atoms, 130598 bonds, 1 pseudobond, 9069 residues, 2 models selected 
    6161 
    6162 > select up
    6163 
    6164 121607 atoms, 131588 bonds, 1 pseudobond, 9267 residues, 2 models selected 
    6165 
    6166 > select add #6/AE:92
    6167 
    6168 121612 atoms, 131592 bonds, 1 pseudobond, 9268 residues, 2 models selected 
    6169 
    6170 > select up
    6171 
    6172 121667 atoms, 131647 bonds, 1 pseudobond, 9279 residues, 2 models selected 
    6173 
    6174 > select up
    6175 
    6176 122443 atoms, 132438 bonds, 1 pseudobond, 9393 residues, 2 models selected 
    6177 
    6178 > select add #6/AB:127
    6179 
    6180 122450 atoms, 132445 bonds, 1 pseudobond, 9394 residues, 2 models selected 
    6181 
    6182 > select up
    6183 
    6184 122501 atoms, 132498 bonds, 1 pseudobond, 9400 residues, 2 models selected 
    6185 
    6186 > select up
    6187 
    6188 123446 atoms, 133456 bonds, 1 pseudobond, 9529 residues, 2 models selected 
    6189 
    6190 > select ~sel & ##selected
    6191 
    6192 81516 atoms, 86726 bonds, 1725 pseudobonds, 7369 residues, 4 models selected 
    6193 
    6194 > select subtract /AN
    6195 
    6196 80436 atoms, 85620 bonds, 1725 pseudobonds, 7234 residues, 4 models selected 
    6197 
    6198 > select subtract /AY'
    6199 
    6200 80436 atoms, 85620 bonds, 1725 pseudobonds, 7234 residues, 4 models selected 
    6201 
    6202 > select subtract /AY
    6203 
    6204 79699 atoms, 84875 bonds, 1725 pseudobonds, 7138 residues, 4 models selected 
    6205 
    6206 > select subtract /AT
    6207 
    6208 79004 atoms, 84174 bonds, 1721 pseudobonds, 7046 residues, 4 models selected 
    6209 
    6210 > select subtract /AW
    6211 
    6212 77105 atoms, 82241 bonds, 1721 pseudobonds, 6795 residues, 4 models selected 
    6213 
    6214 > select subtract /el
    6215 
    6216 77105 atoms, 82241 bonds, 1721 pseudobonds, 6795 residues, 4 models selected 
    6217 
    6218 > select subtract /eI
    6219 
    6220 75962 atoms, 81083 bonds, 1721 pseudobonds, 6641 residues, 4 models selected 
    6221 
    6222 > color (#!6 & sel) #fffc79ff
    6223 
    6224 > select ~sel & ##selected
    6225 
    6226 129000 atoms, 139099 bonds, 3509 pseudobonds, 10257 residues, 4 models
    6227 selected 
    6228 
    6229 > color (#!6 & sel) #76d6ffff
    6230 
    6231 > select #6/m:45
    6232 
    6233 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6234 
    6235 > select add #6/n:46
    6236 
    6237 47 atoms, 51 bonds, 2 residues, 1 model selected 
    6238 
    6239 > select up
    6240 
    6241 3235 atoms, 3613 bonds, 151 residues, 1 model selected 
    6242 
    6243 > select up
    6244 
    6245 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    6246 
    6247 > select down
    6248 
    6249 3235 atoms, 3613 bonds, 151 residues, 1 model selected 
    6250 
    6251 > color sel orange red
    6252 
    6253 > select #6/eI:139
    6254 
    6255 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6256 
    6257 > select up
    6258 
    6259 57 atoms, 56 bonds, 8 residues, 1 model selected 
    6260 
    6261 > select up
    6262 
    6263 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    6264 
    6265 > color sel forest green
    6266 
    6267 > show #!5 models
    6268 
    6269 > select add #6
    6270 
    6271 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    6272 selected 
    6273 
    6274 > color zone #5 near sel distance 24
    6275 
    6276 > hide #!6 models
    6277 
    6278 > lighting soft
    6279 
    6280 > save /Users/campbell/Desktop/image3.png supersample 3
    6281 
    6282 > show #!3 models
    6283 
    6284 > hide #!5 models
    6285 
    6286 > show #!5 models
    6287 
    6288 > hide #!5 models
    6289 
    6290 > show #!59 models
    6291 
    6292 > show #!6 models
    6293 
    6294 > hide #!6 models
    6295 
    6296 > show #!6 models
    6297 
    6298 > select subtract #6
    6299 
    6300 Nothing selected 
    6301 
    6302 > select add #59
    6303 
    6304 207751 atoms, 223107 bonds, 4428 pseudobonds, 17064 residues, 3 models
    6305 selected 
    6306 
    6307 > hide #!59 models
    6308 
    6309 > hide #!6 models
    6310 
    6311 > select subtract #59
    6312 
    6313 Nothing selected 
    6314 
    6315 > select subtract /eIopen 6gz7
    6316 
    6317 Expected a keyword 
    6318 
    6319 > open 6gz7
    6320 
    6321 Summary of feedback from opening 6gz7 fetched from pdb 
    6322 --- 
    6323 note | Fetching compressed mmCIF 6gz7 from http://files.rcsb.org/download/6gz7.cif 
    6324  
    6325 6gz7 title: 
    6326 Polyamide - DNA complex NMR structure [more info...] 
    6327  
    6328 Chain information for 6gz7 
    6329 --- 
    6330 Chain | Description 
    6331 7.1/A 7.2/A 7.3/A 7.4/A 7.5/A 7.6/A 7.7/A 7.8/A 7.9/A 7.10/A 7.11/A 7.1/B 7.2/B 7.3/B 7.4/B 7.5/B 7.6/B 7.7/B 7.8/B 7.9/B 7.10/B 7.11/B | DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') 
    6332  
    6333 
    6334 > open 6gz5
    6335 
    6336 6gz5 title: 
    6337 tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP
    6338 hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) [more info...] 
    6339  
    6340 Chain information for 6gz5 #8 
    6341 --- 
    6342 Chain | Description 
    6343 A2 | 28S ribosomal RNA 
    6344 A3 | 5.8S ribosomal RNA 
    6345 A4 | 5S ribosomal RNA 
    6346 AA | ribosomal protein uL2 
    6347 AB | ribosomal protein uL3 
    6348 AC | ribosomal protein uL4 
    6349 AD | ribosomal protein uL18 
    6350 AE | ribosomal protein eL6 
    6351 AF | ribosomal protein uL30 
    6352 AG | ribosomal protein eL8 
    6353 AH | ribosomal protein uL6 
    6354 AI | ribosomal protein uL16 
    6355 AJ | ribosomal protein uL5 
    6356 AK | ribosomal protein uL10 
    6357 AL | ribosomal protein eL13 
    6358 AM | ribosomal protein eL14 
    6359 AN | ribosomal protein eL15 
    6360 AO | ribosomal protein uL13 
    6361 AP | ribosomal protein uL22 
    6362 AQ | ribosomal protein eL18 
    6363 AR | ribosomal protein eL19 
    6364 AS | ribosomal protein eL20 
    6365 AT | ribosomal protein eL21 
    6366 AU | ribosomal protein eL22 
    6367 AV | ribosomal protein uL14 
    6368 AW | ribosomal protein eL24 
    6369 AX | ribosomal protein uL23 
    6370 AY | ribosomal protein uL24 
    6371 AZ | ribosomal protein eL27 
    6372 Aa | ribosomal protein uL15 
    6373 Ab | ribosomal protein eL29 
    6374 Ac | ribosomal protein eL30 
    6375 Ad | ribosomal protein eL31 
    6376 Ae | ribosomal protein eL32 
    6377 Af | ribosomal protein eL33 
    6378 Ag | ribosomal protein eL34 
    6379 Ah | ribosomal protein uL29 
    6380 Ai | ribosomal protein eL36 
    6381 Aj | ribosomal protein eL37 
    6382 Ak | ribosomal protein eL38 
    6383 Al | ribosomal protein eL39 
    6384 Am | ribosomal protein eL40 
    6385 An | ribosomal protein eL41 
    6386 Ao | ribosomal protein eL42 
    6387 Ap | ribosomal protein eL43 
    6388 Aq | ribosomal protein uL11 
    6389 At | ribosomal protein eL28 
    6390 Au | ribosomal protein uL1 
    6391 B1 | 18S ribosomal RNA 
    6392 BA | ribosomal protein uS2 
    6393 BB | ribosomal protein eS1 
    6394 BC | ribosomal protein uS5 
    6395 BD | ribosomal protein uS3 
    6396 BE | ribosomal protein eS4 
    6397 BF | ribosomal protein uS7 
    6398 BG | ribosomal protein eS6 
    6399 BH | ribosomal protein eS7 
    6400 BI | ribosomal protein eS8 
    6401 BJ | ribosomal protein uS4 
    6402 BK | ribosomal protein eS10 
    6403 BL | ribosomal protein uS17 
    6404 BM | ribosomal protein eS12 
    6405 BN | ribosomal protein uS15 
    6406 BO | ribosomal protein uS11 
    6407 BP | ribosomal protein uS19 
    6408 BQ | ribosomal protein uS9 
    6409 BR | ribosomal protein eS17 
    6410 BS | ribosomal protein uS13 
    6411 BT | ribosomal protein eS19 
    6412 BU | ribosomal protein uS10 
    6413 BV | ribosomal protein eS21 
    6414 BW | ribosomal protein uS8 
    6415 BX | ribosomal protein uS12 
    6416 BY | ribosomal protein eS24 
    6417 BZ | ribosomal protein eS25 
    6418 Ba | ribosomal protein eS26 
    6419 Bb | ribosomal protein eS27 
    6420 Bc | ribosomal protein eS28 
    6421 Bd | ribosomal protein uS14 
    6422 Be | ribosomal protein eS30 
    6423 Bf | ribosomal protein eS31 
    6424 Bg | ribosomal protein RACK 1 
    6425 Bv | P/P-site-tRNA 
    6426 Bw | E/E-site-tRNA 
    6427 Bx | mRNA 
    6428 Ct | eukaryotic elongation factor 2 (eEF2) 
    6429  
    6430 Non-standard residues in 6gz5 #8 
    6431 --- 
    6432 GNP — phosphoaminophosphonic acid-guanylate ester 
    6433 MG — magnesium ion 
    6434 ZN — zinc ion 
    6435  
    6436 
    6437 > close #7
    6438 
    6439 > select #8/A2:632@OP2
    6440 
    6441 1 atom, 1 residue, 1 model selected 
    6442 
    6443 > select up
    6444 
    6445 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6446 
    6447 > select up
    6448 
    6449 77427 atoms, 86624 bonds, 3612 residues, 1 model selected 
    6450 
    6451 > select up
    6452 
    6453 77656 atoms, 86624 bonds, 3841 residues, 1 model selected 
    6454 
    6455 > select up
    6456 
    6457 225601 atoms, 241695 bonds, 18791 residues, 1 model selected 
    6458 
    6459 > select up
    6460 
    6461 1483501 atoms, 1590931 bonds, 123492 residues, 17 models selected 
    6462 
    6463 > select down
    6464 
    6465 225601 atoms, 241695 bonds, 18791 residues, 1 model selected 
    6466 
    6467 > hide sel atoms
    6468 
    6469 > show sel cartoons
    6470 
    6471 > view matrix models #8,1,0,0,280.59,0,1,0,95.347,0,0,1,-14.904
    6472 
    6473 > view matrix models
    6474 > #8,0.53386,0.26704,-0.8023,500,-0.49741,0.86647,-0.042577,236.26,0.6838,0.4218,0.5954,-155.56
    6475 
    6476 > view matrix models
    6477 > #8,-0.18352,0.56975,-0.80107,603.04,-0.79091,-0.56951,-0.22386,590.77,-0.58376,0.59249,0.55514,99.427
    6478 
    6479 > view matrix models
    6480 > #8,-0.66949,0.17477,-0.72197,762.57,0.72769,0.34947,-0.5902,172.28,0.14916,-0.9205,-0.36115,394.23
    6481 
    6482 > view matrix models
    6483 > #8,0.27793,-0.010744,-0.96054,637.35,0.95554,0.10558,0.2753,-12.136,0.098458,-0.99435,0.039611,336.06
    6484 
    6485 > view matrix models
    6486 > #8,0.80383,-0.26024,-0.53492,479.12,0.57053,0.082729,0.8171,-35.238,-0.16838,-0.96199,0.21497,352.64
    6487 
    6488 > view matrix models
    6489 > #8,0.79149,0.53728,-0.29133,291.19,0.17954,0.25124,0.95113,-7.0749,0.58421,-0.80512,0.10239,183.72
    6490 
    6491 > view matrix models
    6492 > #8,0.74092,0.0076392,0.67155,197.98,-0.64559,-0.26743,0.71533,312.98,0.18506,-0.96355,-0.19321,359.51
    6493 
    6494 > view matrix models
    6495 > #8,0.74092,0.0076392,0.67155,1.8972,-0.64559,-0.26743,0.71533,224.34,0.18506,-0.96355,-0.19321,412.72
    6496 
    6497 > view matrix models
    6498 > #8,0.74092,0.0076392,0.67155,-81.594,-0.64559,-0.26743,0.71533,282.81,0.18506,-0.96355,-0.19321,447.85
    6499 
    6500 > view matrix models
    6501 > #8,0.79644,0.0032519,0.60471,-79.225,-0.5665,-0.34585,0.74797,272.66,0.21157,-0.93828,-0.27361,454.1
    6502 
    6503 > view matrix models
    6504 > #8,0.83971,-0.076871,0.53757,-60.765,-0.53734,-0.26064,0.80208,240.16,0.078455,-0.96237,-0.26017,484.67
    6505 
    6506 > view matrix models
    6507 > #8,0.83971,-0.076871,0.53757,-23.422,-0.53734,-0.26064,0.80208,243.29,0.078455,-0.96237,-0.26017,477.88
    6508 
    6509 > fitmap #8 inMap #3
    6510 
    6511 Fit molecule 6gz5 (#8) to map MultiPostProcessor_PPout_3.mrc (#3) using 225601
    6512 atoms 
    6513 average map value = 0.7158, steps = 148 
    6514 shifted from previous position = 12.3 
    6515 rotated from previous position = 31.1 degrees 
    6516 atoms outside contour = 62684, contour level = 0.6 
    6517  
    6518 Position of 6gz5 (#8) relative to MultiPostProcessor_PPout_3.mrc (#3)
    6519 coordinates: 
    6520 Matrix rotation and translation 
    6521 0.98555011 -0.16435080 0.04098486 68.71830221 
    6522 -0.08024433 -0.23993378 0.96746711 118.30036800 
    6523 -0.14917034 -0.95677613 -0.24965498 510.53826995 
    6524 Axis -0.99421263 0.09824886 0.04345590 
    6525 Axis point 0.00000000 261.58202709 209.46786979 
    6526 Rotation angle (degrees) 104.59703757 
    6527 Shift along axis -34.51182807 
    6528  
    6529 
    6530 > hide #!3 models
    6531 
    6532 > view matrix models
    6533 > #8,0.98772,-0.15208,0.03592,11.989,-0.070653,-0.2296,0.97072,98.487,-0.13938,-0.96133,-0.23752,506.41
    6534 
    6535 Drag select of 7893 residues 
    6536 
    6537 > select up
    6538 
    6539 130107 atoms, 141177 bonds, 9391 residues, 1 model selected 
    6540 
    6541 > select up
    6542 
    6543 144988 atoms, 156335 bonds, 11284 residues, 1 model selected 
    6544 
    6545 > select add #8/AZ:117
    6546 
    6547 144997 atoms, 156343 bonds, 11285 residues, 1 model selected 
    6548 
    6549 > select add #8/Ac:106
    6550 
    6551 145008 atoms, 156353 bonds, 11286 residues, 1 model selected 
    6552 
    6553 > select up
    6554 
    6555 145221 atoms, 156569 bonds, 11311 residues, 1 model selected 
    6556 
    6557 > select up
    6558 
    6559 146892 atoms, 158273 bonds, 11521 residues, 1 model selected 
    6560 
    6561 > select up
    6562 
    6563 147176 atoms, 158307 bonds, 11774 residues, 1 model selected 
    6564 
    6565 > select add #8/Ap:84
    6566 
    6567 147187 atoms, 158317 bonds, 11775 residues, 1 model selected 
    6568 
    6569 > select up
    6570 
    6571 147298 atoms, 158428 bonds, 11790 residues, 1 model selected 
    6572 
    6573 > select up
    6574 
    6575 147884 atoms, 159025 bonds, 11865 residues, 1 model selected 
    6576 
    6577 > select add #8/Aq:112
    6578 
    6579 147892 atoms, 159032 bonds, 11866 residues, 1 model selected 
    6580 
    6581 > select up
    6582 
    6583 147968 atoms, 159108 bonds, 11875 residues, 1 model selected 
    6584 
    6585 > select up
    6586 
    6587 149024 atoms, 160180 bonds, 12016 residues, 1 model selected 
    6588 
    6589 > select add #8/AW:103
    6590 
    6591 149029 atoms, 160184 bonds, 12017 residues, 1 model selected 
    6592 
    6593 > select up
    6594 
    6595 149228 atoms, 160384 bonds, 12042 residues, 1 model selected 
    6596 
    6597 > select up
    6598 
    6599 150013 atoms, 161184 bonds, 12137 residues, 1 model selected 
    6600 
    6601 > select up
    6602 
    6603 150014 atoms, 161184 bonds, 12138 residues, 1 model selected 
    6604 
    6605 > select ~sel & ##selected
    6606 
    6607 75587 atoms, 80511 bonds, 1634 pseudobonds, 6653 residues, 3 models selected 
    6608 
    6609 > color (#!8 & sel) #fffc79ff
    6610 
    6611 > select ~sel & ##selected
    6612 
    6613 150014 atoms, 161184 bonds, 4024 pseudobonds, 12138 residues, 3 models
    6614 selected 
    6615 
    6616 > color (#!8 & sel) #76d6ffff
    6617 
    6618 > select #8/Ct:366
    6619 
    6620 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6621 
    6622 > select up
    6623 
    6624 62 atoms, 63 bonds, 8 residues, 1 model selected 
    6625 
    6626 > select up
    6627 
    6628 6659 atoms, 6789 bonds, 853 residues, 1 model selected 
    6629 
    6630 > select up
    6631 
    6632 6691 atoms, 6823 bonds, 854 residues, 1 model selected 
    6633 
    6634 > color sel forest green
    6635 
    6636 > select #8/Bv:19
    6637 
    6638 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6639 
    6640 > select add #8/Bw:47
    6641 
    6642 40 atoms, 42 bonds, 2 residues, 1 model selected 
    6643 
    6644 > select up
    6645 
    6646 3247 atoms, 3629 bonds, 152 residues, 1 model selected 
    6647 
    6648 > select up
    6649 
    6650 225601 atoms, 241695 bonds, 18791 residues, 1 model selected 
    6651 
    6652 > select down
    6653 
    6654 3247 atoms, 3629 bonds, 152 residues, 1 model selected 
    6655 
    6656 > color sel orange red
    6657 
    6658 > show #!3 models
    6659 
    6660 > show #!4 models
    6661 
    6662 > hide #!4 models
    6663 
    6664 > view matrix models
    6665 > #8,0.98772,-0.15208,0.03592,50.978,-0.070653,-0.2296,0.97072,119.64,-0.13938,-0.96133,-0.23752,515.93
    6666 
    6667 > fitmap #8 inMap #3
    6668 
    6669 Fit molecule 6gz5 (#8) to map MultiPostProcessor_PPout_3.mrc (#3) using 225601
    6670 atoms 
    6671 average map value = 0.7158, steps = 88 
    6672 shifted from previous position = 18.8 
    6673 rotated from previous position = 0.0276 degrees 
    6674 atoms outside contour = 62716, contour level = 0.6 
    6675  
    6676 Position of 6gz5 (#8) relative to MultiPostProcessor_PPout_3.mrc (#3)
    6677 coordinates: 
    6678 Matrix rotation and translation 
    6679 0.98552175 -0.16444579 0.04128487 68.70940628 
    6680 -0.08050096 -0.23953489 0.96754463 118.26802312 
    6681 -0.14921947 -0.95685976 -0.24930488 510.57092206 
    6682 Axis -0.99419956 0.09841971 0.04336818 
    6683 Axis point 0.00000000 261.66236723 209.47181612 
    6684 Rotation angle (degrees) 104.57570564 
    6685 Shift along axis -34.52842622 
    6686  
    6687 
    6688 > select add #3
    6689 
    6690 3247 atoms, 3629 bonds, 152 residues, 3 models selected 
    6691 
    6692 > select clear
    6693 
    6694 > select add #3
    6695 
    6696 2 models selected 
    6697 
    6698 No atoms selected for color zoning 
    6699 
    6700 [Repeated 1 time(s)]
    6701 
    6702 > select add #8
    6703 
    6704 225601 atoms, 241695 bonds, 5658 pseudobonds, 18791 residues, 5 models
    6705 selected 
    6706 
    6707 > select subtract #3
    6708 
    6709 225601 atoms, 241695 bonds, 5658 pseudobonds, 18791 residues, 3 models
    6710 selected 
    6711 
    6712 > color zone #3 near sel distance 24
    6713 
    6714 > hide #!8 models
    6715 
    6716 > color zone #3 near sel distance 12
    6717 
    6718 [Repeated 2 time(s)]
    6719 
    6720 > show #!4 models
    6721 
    6722 > hide #!4 models
    6723 
    6724 > show #!4 models
    6725 
    6726 > hide #!4 models
    6727 
    6728 > show #!4 models
    6729 
    6730 > hide #!4 models
    6731 
    6732 > show #!4 models
    6733 
    6734 > show #!5 models
    6735 
    6736 > hide #!5 models
    6737 
    6738 > show #!5 models
    6739 
    6740 > hide #!5 models
    6741 
    6742 > hide #!4 models
    6743 
    6744 > hide #!3 models
    6745 
    6746 > show #!3 models
    6747 
    6748 > show #!5 models
    6749 
    6750 > hide #!5 models
    6751 
    6752 > show #!5 models
    6753 
    6754 > hide #!5 models
    6755 
    6756 > show #!5 models
    6757 
    6758 > hide #!5 models
    6759 
    6760 > show #!8 models
    6761 
    6762 > close #2
    6763 
    6764 > close #8
    6765 
    6766 > close #6
    6767 
    6768 > open 6hcj
    6769 
    6770 Summary of feedback from opening 6hcj fetched from pdb 
    6771 --- 
    6772 note | Fetching compressed mmCIF 6hcj from http://files.rcsb.org/download/6hcj.cif 
    6773  
    6774 6hcj title: 
    6775 Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with
    6776 A/P and P/E tRNAs [more info...] 
    6777  
    6778 Chain information for 6hcj #2 
    6779 --- 
    6780 Chain | Description | UniProt 
    6781 1 | nascent chain |   
    6782 33 | P/E tRNA |   
    6783 51 | 28S ribosomal RNA |   
    6784 71 | 5S ribosomal RNA |   
    6785 81 | 5.8S ribosomal RNA |   
    6786 A2 | 18S ribosomal RNA |   
    6787 A3 | Ribosomal protein L8 | G1TT27_RABIT 1-257 
    6788 B2 | uS2 |   
    6789 B3 | uL3 | G1TL06_RABIT 2-403 
    6790 C2 | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    6791 C3 | uL4 |   
    6792 D2 | uS5 |   
    6793 D3 | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    6794 E2 | uS3 | G1TNM3_RABIT 1-243 
    6795 E3 | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    6796 F2 | eS4 |   
    6797 F3 | uL30 | G1TUB1_RABIT 1-247 
    6798 G2 | Ribosomal protein S5 | G1TFM5_RABIT 1-204 
    6799 G3 | eL8 |   
    6800 H2 | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    6801 H3 | uL6 | G1TX33_RABIT 1-192 
    6802 I2 | 40S ribosomal protein S7 | G1SVB0_RABIT 1-194 
    6803 I3 | 60S ribosomal protein L10 | B7NZQ2_RABIT 1-214 
    6804 J2 | eS8 |   
    6805 J3 | Ribosomal protein L11 | G1TUB8_RABIT 1-178 
    6806 K2 | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    6807 L2 | eS10 | G1TPV3_RABIT 1-165 
    6808 L3 | eL13 |   
    6809 M2 | Ribosomal protein S11 | G1TRM4_RABIT 1-158 
    6810 M3 | Ribosomal protein L14 | G1SZ12_RABIT 1-218 
    6811 N2 | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    6812 N3 | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    6813 O2 | uS15 | G1SP51_RABIT 1-151 
    6814 O3 | uL13 |   
    6815 P2 | uS11 |   
    6816 P3 | uL22 | G1TVT6_RABIT 1-184 
    6817 Q2 | uS19 | G1U0Q2_RABIT 1-145 
    6818 Q3 | eL18 |   
    6819 R2 | Ribosomal protein S16 | G1SGX4_RABIT 1-146 
    6820 R3 | eL19 |   
    6821 S2 | eS17 | G1TU13_RABIT 1-135 
    6822 S3 | eL20 |   
    6823 T2 | uS13 | G1TPG3_RABIT 1-152 
    6824 T3 | eL21 | G1SHQ2_RABIT 1-160 
    6825 U2 | eS19 |   
    6826 U3 | eL22 |   
    6827 V2 | uS10 | G1SIZ2_RABIT 1-119 
    6828 V3 | Ribosomal protein L23 | G1T6D1_RABIT 1-140 
    6829 W2 | eS21 |   
    6830 X2 | Ribosomal protein S15a | G1TG89_RABIT 1-130 
    6831 X3 | uL23 | G1SE76_RABIT 1-156 
    6832 Y2 | uS12 |   
    6833 Y3 | Ribosomal protein L26 | G1SQH0_RABIT 1-145 
    6834 Z2 | eS24 |   
    6835 Z3 | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    6836 a2 | eS25 | G1TDB3_RABIT 1-125 
    6837 a3 | uL15 | G1SNY0_RABIT 2-148 
    6838 b2 | eS26 |   
    6839 b3 | eL29 | G1SGR6_RABIT 1-226 
    6840 c2 | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    6841 c3 | eL30 | G1TDL2_RABIT 1-115 
    6842 d2 | Ribosomal protein S28 | G1TIB4_RABIT 1-69 
    6843 d3 | eL31 | G1SHG0_RABIT 1-125 
    6844 e2 | uS14 | G1U7M4_RABIT 1-56 
    6845 e3 | eL32 | G1U437_RABIT 1-135 
    6846 f2 | 40S ribosomal protein S30 | G1T8A2_RABIT 0-132 
    6847 f3 | eL33 | G1SF08_RABIT 1-110 
    6848 g2 | Ribosomal protein S27a | G1SK22_RABIT 1-156 
    6849 g3 | eL34 |   
    6850 h2 | RACK1 | G1SJB4_RABIT 1-317 
    6851 h3 | uL29 | G1SIT5_RABIT 1-123 
    6852 i3 | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    6853 j3 | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    6854 k3 | eL38 |   
    6855 l3 | eL39 | G1TTN1_RABIT 1-51 
    6856 m3 | eL40 |   
    6857 n3 | eL41 |   
    6858 o3 | eL42 |   
    6859 p3 | eL43 | G1SY53_RABIT 1-92 
    6860 q3 | A/P RNA |   
    6861 r3 | eL28 | G1U7L1_RABIT 1-137 
    6862 t3 | uL10 |   
    6863 u3 | Ribosomal protein L12 | G1SMR7_RABIT 1-165 
    6864 v3 | mRNA |   
    6865 w3 | uL1 | G1SKZ8_RABIT 1-217 
    6866  
    6867 Non-standard residues in 6hcj #2 
    6868 --- 
    6869 MG — magnesium ion 
    6870 ZN — zinc ion 
    6871  
    6872 
    6873 > select #2/A2:756@C6
    6874 
    6875 1 atom, 1 residue, 1 model selected 
    6876 
    6877 > view matrix models #2,1,0,0,-205.34,0,1,0,-35.929,0,0,1,60.738
    6878 
    6879 > show #!50 models
    6880 
    6881 > hide #!50 models
    6882 
    6883 > view matrix models
    6884 > #2,0.80107,-0.53914,-0.26003,67.199,0.37572,0.11474,0.9196,-121.02,-0.46596,-0.83436,0.29448,602.4
    6885 
    6886 > view matrix models
    6887 > #2,-0.53044,-0.79799,0.28607,321,0.58943,-0.10466,0.80101,-78.841,-0.60926,0.59351,0.52588,167.15
    6888 
    6889 > view matrix models
    6890 > #2,-0.66738,-0.7439,0.035021,406.29,0.023332,0.026117,0.99939,-30.761,-0.74436,0.66778,-7.3503e-05,319.84
    6891 
    6892 > view matrix models
    6893 > #2,-0.66738,-0.7439,0.035021,458.57,0.023332,0.026117,0.99939,139.97,-0.74436,0.66778,-7.3503e-05,381.64
    6894 
    6895 > view matrix models
    6896 > #2,0.20811,0.61999,0.7565,-339.09,0.66421,0.47818,-0.57461,275.3,-0.718,0.62206,-0.31229,471.88
    6897 
    6898 > view matrix models
    6899 > #2,0.10791,0.55803,0.82277,-314.58,0.48253,0.69418,-0.53411,247.15,-0.8692,0.45465,-0.19436,525.2
    6900 
    6901 > view matrix models
    6902 > #2,0.13833,0.92572,0.352,-301.11,0.094643,0.34143,-0.93513,550.42,-0.98585,0.16267,-0.040384,596.03
    6903 
    6904 > view matrix models
    6905 > #2,0.17132,0.94637,0.27393,-294.18,0.24046,0.22947,-0.94315,548.88,-0.95542,0.22745,-0.18825,609.65
    6906 
    6907 > view matrix models
    6908 > #2,0.17132,0.94637,0.27393,-327.99,0.24046,0.22947,-0.94315,368.19,-0.95542,0.22745,-0.18825,585.52
    6909 
    6910 > view matrix models
    6911 > #2,0.17132,0.94637,0.27393,-150.27,0.24046,0.22947,-0.94315,363.19,-0.95542,0.22745,-0.18825,506.09
    6912 
    6913 > fitmap #2 inMap #3
    6914 
    6915 Fit molecule 6hcj (#2) to map MultiPostProcessor_PPout_3.mrc (#3) using 219683
    6916 atoms 
    6917 average map value = 0.7213, steps = 120 
    6918 shifted from previous position = 22.9 
    6919 rotated from previous position = 23.8 degrees 
    6920 atoms outside contour = 58481, contour level = 0.6 
    6921  
    6922 Position of 6hcj (#2) relative to MultiPostProcessor_PPout_3.mrc (#3)
    6923 coordinates: 
    6924 Matrix rotation and translation 
    6925 0.19969064 0.96898940 -0.14554449 -39.34028625 
    6926 0.17726708 -0.18181069 -0.96722348 508.21336141 
    6927 -0.96369084 0.16734523 -0.20807582 512.21145042 
    6928 Axis 0.70588204 0.50901704 -0.49257710 
    6929 Axis point 0.00000000 89.25330235 427.63401500 
    6930 Rotation angle (degrees) 126.51961377 
    6931 Shift along axis -21.38396817 
    6932  
    6933 
    6934 > select #2/A2:1777@C2'
    6935 
    6936 1 atom, 1 residue, 1 model selected 
    6937 
    6938 > select clear
    6939 
    6940 > hide #!2 atoms
    6941 
    6942 > show #!2 cartoons
    6943 
    6944 > hide #!3 models
    6945 
    6946 Drag select of 5604 residues, 4 pseudobonds 
    6947 
    6948 > select up
    6949 
    6950 116863 atoms, 127373 bonds, 4 pseudobonds, 8009 residues, 2 models selected 
    6951 
    6952 > select up
    6953 
    6954 124888 atoms, 135571 bonds, 4 pseudobonds, 8983 residues, 2 models selected 
    6955 Drag select of 8723 residues, 7 pseudobonds 
    6956 
    6957 > select up
    6958 
    6959 133961 atoms, 145116 bonds, 7 pseudobonds, 9874 residues, 2 models selected 
    6960 
    6961 > select up
    6962 
    6963 140205 atoms, 151473 bonds, 7 pseudobonds, 10661 residues, 2 models selected 
    6964 
    6965 > select ~sel & ##selected
    6966 
    6967 79478 atoms, 84304 bonds, 1501 pseudobonds, 7285 residues, 4 models selected 
    6968 
    6969 > select subtract /p3
    6970 
    6971 78769 atoms, 83585 bonds, 1500 pseudobonds, 7193 residues, 4 models selected 
    6972 
    6973 > select subtract /c3
    6974 
    6975 78008 atoms, 82814 bonds, 1500 pseudobonds, 7095 residues, 4 models selected 
    6976 
    6977 > select subtract /u3
    6978 
    6979 76848 atoms, 81640 bonds, 1500 pseudobonds, 6942 residues, 4 models selected 
    6980 
    6981 > color (#!2 & sel) #fffc79ff
    6982 
    6983 > select ~sel & ##selected
    6984 
    6985 142835 atoms, 154137 bonds, 2475 pseudobonds, 11004 residues, 4 models
    6986 selected 
    6987 
    6988 > color (#!2 & sel) #76d6ffff
    6989 
    6990 > select #2/33:51
    6991 
    6992 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6993 
    6994 > select add #2/q3:22
    6995 
    6996 46 atoms, 50 bonds, 2 residues, 1 model selected 
    6997 
    6998 > select up
    6999 
    7000 3183 atoms, 3560 bonds, 149 residues, 1 model selected 
    7001 
    7002 > color sel orange red
    7003 
    7004 > show #!3 models
    7005 
    7006 > select add #2
    7007 
    7008 219683 atoms, 235777 bonds, 3975 pseudobonds, 17946 residues, 4 models
    7009 selected 
    7010 
    7011 > show #!59 models
    7012 
    7013 > hide #!3 models
    7014 
    7015 > hide #!59 models
    7016 
    7017 > show #!61 models
    7018 
    7019 > select add #61/eEF2:91
    7020 
    7021 219692 atoms, 235785 bonds, 3975 pseudobonds, 17947 residues, 5 models
    7022 selected 
    7023 
    7024 > select up
    7025 
    7026 219809 atoms, 235902 bonds, 3975 pseudobonds, 17962 residues, 5 models
    7027 selected 
    7028 
    7029 > select up
    7030 
    7031 226252 atoms, 242472 bonds, 3975 pseudobonds, 18788 residues, 5 models
    7032 selected 
    7033 
    7034 > hide #!61 models
    7035 
    7036 > show #!3 models
    7037 
    7038 > color zone #3 near sel distance 12
    7039 
    7040 > hide #!2 models
    7041 
    7042 > show #!4 models
    7043 
    7044 > show #!5 models
    7045 
    7046 > hide #!4 models
    7047 
    7048 > hide #!5 models
    7049 
    7050 > hide #!3 models
    7051 
    7052 > select subtract #2
    7053 
    7054 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    7055 
    7056 > show #!4 models
    7057 
    7058 > show #!5 models
    7059 
    7060 > hide #!4 models
    7061 
    7062 > show #!4 models
    7063 
    7064 > open 6tnu
    7065 
    7066 6tnu title: 
    7067 Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
    7068 [more info...] 
    7069  
    7070 Chain information for 6tnu #6 
    7071 --- 
    7072 Chain | Description | UniProt 
    7073 2 | 18S rRNA |   
    7074 A | 40S ribosomal protein S3 | RS3_YEAST 4-225 
    7075 AA | 60S ribosomal protein L8-A | RL8A_YEAST 24-256 
    7076 AB | 60S ribosomal protein L23-A | RL23A_YEAST 2-137 
    7077 AC | 60S ribosomal protein L36-A | RL36A_YEAST 2-100 
    7078 AD | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    7079 AE | 60S ribosomal protein L24-A | RL24A_YEAST 1-126 
    7080 AF | 60S ribosomal protein L37-A | RL37A_YEAST 2-82 
    7081 AG | 60S ribosomal protein L11-B | RL11B_YEAST 6-174 
    7082 AH | 60S ribosomal protein L25 | RL25_YEAST 22-142 
    7083 AI | 60S ribosomal protein L38 | RL38_YEAST 2-78 
    7084 AJ | 60S ribosomal protein L13-A | RL13A_YEAST 2-194 
    7085 AK | 60S ribosomal protein L26-A | RL26A_YEAST 2-126 
    7086 AL | 60S ribosomal protein L39 | RL39_YEAST 2-51 
    7087 AM | 60S ribosomal protein L14-A | RL14A_YEAST 3-138 
    7088 AN | 60S ribosomal protein L27-A | RL27A_YEAST 2-136 
    7089 AO | Ubiquitin-60S ribosomal protein L40 | RL40A_YEAST 77-128 
    7090 AP | 60S ribosomal protein L42-A | RL44A_YEAST 2-104 
    7091 AQ | 60S ribosomal protein L15-A | RL15A_YEAST 2-204 
    7092 AR | 60S ribosomal protein L28 | RL28_YEAST 2-149 
    7093 AS | 60S ribosomal protein L41-A |   
    7094 AT | 60S ribosomal protein L43-A | RL43A_YEAST 2-92 
    7095 AU | 60S ribosomal protein L16-A | RL16A_YEAST 3-199 
    7096 AV | 60S ribosomal protein L29 | RL29_YEAST 2-59 
    7097 AW | 60S ribosomal protein L2-A | RL2A_YEAST 2-252 
    7098 AX | 60S ribosomal protein L17-A | RL17A_YEAST 2-184 
    7099 AY | 60S ribosomal protein L30 | RL30_YEAST 9-104 
    7100 B | Rps5p | A0A1L4AA68_YEASX 20-225 
    7101 BA | 60S ribosomal protein L3 | RL3_YEAST 2-387 
    7102 BB | 60S ribosomal protein L18-A | RL18A_YEAST 2-186 
    7103 BC | 60S ribosomal protein L31-A | RL31A_YEAST 4-112 
    7104 BD | 60S ribosomal protein L10 | RL10_YEAST 2-219 
    7105 BE | 60S ribosomal protein L4-A | RL4A_YEAST 2-362 
    7106 BF | 60S ribosomal protein L19-A | RL19A_YEAST 2-189 
    7107 BG | 60S ribosomal protein L32 | RL32_YEAST 2-128 
    7108 BH | 60S ribosomal protein L20-A | RL20A_YEAST 2-172 
    7109 BI | 60S ribosomal protein L5 | RL5_YEAST 4-297 
    7110 BJ | 60S ribosomal protein L21-A | RL21A_YEAST 2-160 
    7111 BK | 60S ribosomal protein L33-A | RL33A_YEAST 2-107 
    7112 BL | 60S ribosomal protein L22-A | RL22A_YEAST 9-108 
    7113 BM | 60S ribosomal protein L6-B | RL6B_YEAST 2-176 
    7114 BN | 60S ribosomal protein L34-A | RL34A_YEAST 2-113 
    7115 BO | 60S ribosomal protein L7-A | RL7A_YEAST 23-244 
    7116 BP | 60S ribosomal protein L35-A | RL35A_YEAST 2-120 
    7117 BQ | 25S rRNA |   
    7118 BR | 5S rRNA |   
    7119 BS | 5.8S rRNA |   
    7120 BT | 60S ribosomal protein L1 |   
    7121 C | 40S ribosomal protein S10-A | RS10A_YEAST 1-92 
    7122 D | 40S ribosomal protein S12 | RS12_YEAST 23-143 
    7123 E | 40S ribosomal protein S15 | RS15_YEAST 13-129 
    7124 F | 40S ribosomal protein S16-A | RS16A_YEAST 3-143 
    7125 G | 40S ribosomal protein S17-B | RS17B_YEAST 2-126 
    7126 H | 40S ribosomal protein S18-A | RS18A_YEAST 2-146 
    7127 I | 40S ribosomal protein S19-A | RS19A_YEAST 2-144 
    7128 J | 40S ribosomal protein S20 | RS20_YEAST 20-119 
    7129 K | 40S ribosomal protein S25-A | RS25A_YEAST 24-105 
    7130 L | 40S ribosomal protein S28-A | RS28A_YEAST 5-67 
    7131 M | 40S ribosomal protein S29-A | RS29A_YEAST 4-56 
    7132 N | Ubiquitin-40S ribosomal protein S31 | RS31_YEAST 80-152 
    7133 O | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 5-316 
    7134 P | 40S ribosomal protein S0-A | RSSA1_YEAS1 2-207 
    7135 Q | 40S ribosomal protein S1-A | RS3A1_YEAS1 2-233 
    7136 R | 40S ribosomal protein S2 | RS2_YEAST 34-249 
    7137 S | 40S ribosomal protein S4-A | RS4A_YEAST 2-259 
    7138 T | 40S ribosomal protein S6-A | RS6A_YEAST 1-228 
    7139 U | 40S ribosomal protein S7-A | RS7A_YEAST 4-187 
    7140 V | 40S ribosomal protein S8 | A0A0J9X221_LACKL 2-199 
    7141 W | 40S ribosomal protein S9-A | RS9A_YEAST 2-185 
    7142 X | 40S ribosomal protein S11-A | RS11A_YEAST 4-145 
    7143 Y | 40S ribosomal protein S13 | RS13_YEAST 2-151 
    7144 Z | 40S ribosomal protein S14-B | RS14B_YEAST 11-137 
    7145 a | 40S ribosomal protein S21-A | RS21A_YEAST 1-87 
    7146 b | 40S ribosomal protein S22-A | RS22A_YEAST 2-130 
    7147 c | 40S ribosomal protein S23-A | RS23A_YEAST 2-145 
    7148 d | 40S ribosomal protein S24-A | RS24A_YEAST 2-135 
    7149 e | 40S ribosomal protein S26-B | RS26B_YEAST 2-98 
    7150 eI | Eukaryotic translation initiation factor 5A-1 | IF5A1_YEAST 4-157 
    7151 f | 40S ribosomal protein S27-A | RS27A_YEAST 2-82 
    7152 g | 40S ribosomal protein S30-A | RS30A_YEAST 2-61 
    7153 l | mRNA |   
    7154 m | A-site tRNA |   
    7155 n | P-site tRNA |   
    7156  
    7157 Non-standard residues in 6tnu #6 
    7158 --- 
    7159 3HE —
    7160 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione 
    7161 SPD — spermidine (N-(2-amino-propyl)-1,4-diaminobutane; Pa(34)) 
    7162 ZN — zinc ion 
    7163  
    7164 1555 atoms have alternate locations. Control/examine alternate locations with
    7165 Altloc Explorer [start tool...] or the altlocs command. 
    7166 
    7167 > select #6/2:840@C1'
    7168 
    7169 1 atom, 1 residue, 1 model selected 
    7170 
    7171 > view matrix models #6,1,0,0,148.51,0,1,0,44.76,0,0,1,-71.245
    7172 
    7173 > view matrix models
    7174 > #6,0.82699,0.48535,-0.28378,131.56,-0.15213,-0.29275,-0.94401,669.7,-0.54125,0.82385,-0.16826,134.16
    7175 
    7176 > view matrix models
    7177 > #6,0.35749,0.55763,-0.74917,345.81,-0.58021,-0.49597,-0.64603,756.33,-0.73181,0.66563,0.14624,145.35
    7178 
    7179 > view matrix models
    7180 > #6,0.24674,0.79629,-0.55231,259.31,-0.51837,-0.37309,-0.76948,738.71,-0.81878,0.47616,0.32072,174.4
    7181 
    7182 > view matrix models
    7183 > #6,0.063229,0.97464,-0.21466,171.85,-0.47311,-0.16011,-0.86633,694.16,-0.87873,0.15633,0.45098,243.12
    7184 
    7185 > view matrix models
    7186 > #6,0.086698,0.92161,-0.37832,221.5,-0.31669,-0.33456,-0.88757,707.78,-0.94456,0.19676,0.26286,295.85
    7187 
    7188 > close #6
    7189 
    7190 > open 5lzs
    7191 
    7192 5lzs title: 
    7193 Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA,
    7194 eEF1A, and didemnin B [more info...] 
    7195  
    7196 Chain information for 5lzs #6 
    7197 --- 
    7198 Chain | Description | UniProt 
    7199 2 ii | tRNA |   
    7200 3 | E-site tRNA |   
    7201 5 | 28S ribosomal RNA |   
    7202 7 | 5S ribosomal RNA |   
    7203 8 | 5.8S ribosomal RNA |   
    7204 9 | 18S ribosomal RNA |   
    7205 A | uL2 | G1TT27_RABIT 1-257 
    7206 AA | uS2 |   
    7207 B | uL3 | G1TL06_RABIT 2-403 
    7208 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    7209 C | uL4 | G1SVW5_RABIT 1-378 
    7210 CC | uS5 |   
    7211 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    7212 DD | uS4 | G1TNM3_RABIT 1-243 
    7213 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    7214 EE | 40S ribosomal protein S4 |   
    7215 F | uL30 | G1TUB1_RABIT 1-247 
    7216 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    7217 G | eL8 | G1STW0_RABIT 78-319 
    7218 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    7219 H | uL6 | G1TX33_RABIT 1-192 
    7220 HH | uS7 | G1SVB0_RABIT 1-194 
    7221 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    7222 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    7223 J | uL5 | G1TUB8_RABIT 1-178 
    7224 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    7225 KK | eS10 | G1TPV3_RABIT 1-165 
    7226 L | eL13 |   
    7227 LL | uS17 | G1TRM4_RABIT 1-158 
    7228 M | eL14 | G1SZ12_RABIT 1-218 
    7229 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    7230 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    7231 NN | uS15 | G1SP51_RABIT 1-151 
    7232 O | uL13 |   
    7233 OO | uS11 | G1T1F0_RABIT -4-151 
    7234 P | uL22 | G1TVT6_RABIT 1-184 
    7235 PP | uS19 | G1U0Q2_RABIT 1-145 
    7236 Q | eL18 |   
    7237 QQ | uS9 | G1SGX4_RABIT 1-146 
    7238 R | eL19 |   
    7239 RR | eS17 | G1TU13_RABIT 1-135 
    7240 S | eL20 |   
    7241 SS | uS13 | G1TPG3_RABIT 1-152 
    7242 T | eL21 | G1SHQ2_RABIT 1-160 
    7243 TT | eS19 | G1TN62_RABIT 1-145 
    7244 U | eL22 |   
    7245 UU | uS10 | G1SIZ2_RABIT 1-119 
    7246 V | uL14 | G1T6D1_RABIT 1-140 
    7247 VV | eS21 |   
    7248 W | uL24 | G1SE28_RABIT 1-157 
    7249 WW | uS8 | G1TG89_RABIT 1-130 
    7250 X | uL23 | G1SE76_RABIT 1-156 
    7251 XX | uS12 |   
    7252 Y | uL24 | G1SQH0_RABIT 1-145 
    7253 YY | eS24 |   
    7254 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    7255 ZZ | eS25 | G1TDB3_RABIT 1-125 
    7256 a | uL15 | G1SNY0_RABIT 1-148 
    7257 aa | eS26 |   
    7258 b | eL29 | G1SGR6_RABIT 1-226 
    7259 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    7260 c | eL30 | G1TDL2_RABIT 1-115 
    7261 cc | eS28 | G1TIB4_RABIT 1-69 
    7262 d | eL31 | G1SHG0_RABIT 1-125 
    7263 dd | uS14 | G1U7M4_RABIT 1-56 
    7264 e | eL32 | G1U437_RABIT 1-135 
    7265 ee | eS30 | G1T8A2_RABIT 0-132 
    7266 f | eL33 | G1SF08_RABIT 1-110 
    7267 ff | eS31 | G1SK22_RABIT 1-156 
    7268 g | eL34 | G1U945_RABIT 1-116 
    7269 gg | RACK1 | G1SJB4_RABIT 1-317 
    7270 h | uL29 | G1SIT5_RABIT 1-123 
    7271 hh | mRNA |   
    7272 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    7273 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    7274 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    7275 k | eL38 |   
    7276 l | eL39 | G1TTN1_RABIT 1-51 
    7277 m | eL40 |   
    7278 n | 60s ribosomal protein l41 |   
    7279 o | eL42 | G1U344_RABIT 1-106 
    7280 p | eL43 | G1SY53_RABIT 1-92 
    7281 r | eL28 | G1U7L1_RABIT 1-137 
    7282 s | uL10 |   
    7283 t | uL11 | G1SMR7_RABIT 1-165 
    7284  
    7285 Non-standard residues in 5lzs #6 
    7286 --- 
    7287 7C4 —
    7288 (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-
    7289 pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide 
    7290 GDP — guanosine-5'-diphosphate 
    7291 MG — magnesium ion 
    7292 ZN — zinc ion 
    7293  
    7294 
    7295 > select #6/9:199@C4'
    7296 
    7297 1 atom, 1 residue, 1 model selected 
    7298 
    7299 > view matrix models #6,1,0,0,57.322,0,1,0,12.981,0,0,1,-21.179
    7300 
    7301 > view matrix models
    7302 > #6,0.16633,0.88568,-0.43349,134.4,0.024936,-0.44325,-0.89605,679.37,-0.98576,0.13823,-0.095809,499.01
    7303 
    7304 > view matrix models
    7305 > #6,0.16633,0.88568,-0.43349,74.963,0.024936,-0.44325,-0.89605,650.37,-0.98576,0.13823,-0.095809,543.83
    7306 
    7307 > view matrix models
    7308 > #6,0.16633,0.88568,-0.43349,96.518,0.024936,-0.44325,-0.89605,629.39,-0.98576,0.13823,-0.095809,515.36
    7309 
    7310 > view matrix models
    7311 > #6,0.16633,0.88568,-0.43349,63.252,0.024936,-0.44325,-0.89605,614.05,-0.98576,0.13823,-0.095809,517.57
    7312 
    7313 > hide #!4 models
    7314 
    7315 > show #!4 models
    7316 
    7317 > hide #!5 models
    7318 
    7319 > fitmap #6 inMap #4
    7320 
    7321 Fit molecule 5lzs (#6) to map MultiPostProcessor_PPout_6.mrc (#4) using 220934
    7322 atoms 
    7323 average map value = 0.8005, steps = 104 
    7324 shifted from previous position = 9.98 
    7325 rotated from previous position = 16.3 degrees 
    7326 atoms outside contour = 40809, contour level = 0.6 
    7327  
    7328 Position of 5lzs (#6) relative to MultiPostProcessor_PPout_6.mrc (#4)
    7329 coordinates: 
    7330 Matrix rotation and translation 
    7331 0.16548127 0.97224924 -0.16537042 -35.07168013 
    7332 0.16376994 -0.19244476 -0.96754557 525.04887214 
    7333 -0.97252011 0.13302796 -0.19107121 532.40698350 
    7334 Axis 0.69379307 0.50882094 -0.50965912 
    7335 Axis point 0.00000000 91.40984601 445.00294603 
    7336 Rotation angle (degrees) 127.51848480 
    7337 Shift along axis -28.52269859 
    7338  
    7339 
    7340 > hide #!4 models
    7341 
    7342 > select clear
    7343 
    7344 > hide #!6 atoms
    7345 
    7346 > show #!6 cartoons
    7347 
    7348 Drag select of 5254 residues, 1 pseudobonds 
    7349 Drag select of 8720 residues, 7 pseudobonds 
    7350 
    7351 > select up
    7352 
    7353 131239 atoms, 142165 bonds, 7 pseudobonds, 9661 residues, 2 models selected 
    7354 
    7355 > select up
    7356 
    7357 137761 atoms, 148800 bonds, 7 pseudobonds, 10497 residues, 2 models selected 
    7358 
    7359 > select ~sel & ##selected
    7360 
    7361 83173 atoms, 88152 bonds, 2044 pseudobonds, 7689 residues, 4 models selected 
    7362 
    7363 > select subtract /p
    7364 
    7365 82464 atoms, 87434 bonds, 2040 pseudobonds, 7597 residues, 4 models selected 
    7366 
    7367 > select subtract /c
    7368 
    7369 81703 atoms, 86663 bonds, 2040 pseudobonds, 7499 residues, 4 models selected 
    7370 
    7371 > color (#!6 & sel) #fffc79ff
    7372 
    7373 > select ~sel & ##selected
    7374 
    7375 139231 atoms, 150289 bonds, 3847 pseudobonds, 10687 residues, 4 models
    7376 selected 
    7377 
    7378 > color (#!6 & sel) #76d6ffff
    7379 
    7380 > show #!4 models
    7381 
    7382 > hide #!4 models
    7383 
    7384 > select #6/jj:114
    7385 
    7386 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7387 
    7388 > select up
    7389 
    7390 46 atoms, 45 bonds, 7 residues, 1 model selected 
    7391 
    7392 > select up
    7393 
    7394 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    7395 
    7396 > select up
    7397 
    7398 3491 atoms, 3565 bonds, 444 residues, 1 model selected 
    7399 
    7400 > color sel #d783ffff
    7401 
    7402 > color sel #ff85ffff
    7403 
    7404 > color sel #9437ffff
    7405 
    7406 > color sel #ff40ffff
    7407 
    7408 > color sel #7a81ffff
    7409 
    7410 > color sel #d783ffff
    7411 
    7412 > select #6/ii:22
    7413 
    7414 22 atoms, 24 bonds, 1 residue, 1 model selected 
    7415 
    7416 > select add #6/2:25
    7417 
    7418 42 atoms, 45 bonds, 2 residues, 1 model selected 
    7419 
    7420 > select add #6/3:46
    7421 
    7422 65 atoms, 70 bonds, 3 residues, 1 model selected 
    7423 
    7424 > select up
    7425 
    7426 4825 atoms, 5391 bonds, 227 residues, 1 model selected 
    7427 
    7428 > color sel orange red
    7429 
    7430 > show #!58 models
    7431 
    7432 > hide #!58 models
    7433 
    7434 > show #!60 models
    7435 
    7436 > hide #!60 models
    7437 
    7438 > show #!61 models
    7439 
    7440 > hide #!61 models
    7441 
    7442 > show #!2 models
    7443 
    7444 > select add #6
    7445 
    7446 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    7447 selected 
    7448 
    7449 > select #2/51:4040
    7450 
    7451 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7452 
    7453 > select add #6
    7454 
    7455 220954 atoms, 236973 bonds, 5887 pseudobonds, 18187 residues, 5 models
    7456 selected 
    7457 
    7458 > select up
    7459 
    7460 298761 atoms, 324023 bonds, 5887 pseudobonds, 21821 residues, 5 models
    7461 selected 
    7462 
    7463 > select up
    7464 
    7465 298961 atoms, 324023 bonds, 5887 pseudobonds, 22021 residues, 5 models
    7466 selected 
    7467 
    7468 > select down
    7469 
    7470 298761 atoms, 324023 bonds, 5887 pseudobonds, 21821 residues, 5 models
    7471 selected 
    7472 
    7473 > select subtract #2/33
    7474 
    7475 298761 atoms, 324023 bonds, 5887 pseudobonds, 21821 residues, 5 models
    7476 selected 
    7477 
    7478 > hide #!6 models
    7479 
    7480 > show #!6 models
    7481 
    7482 > hide #!2 models
    7483 
    7484 > show #!2 models
    7485 
    7486 > hide #!2 models
    7487 
    7488 > show #!3 models
    7489 
    7490 > color zone #3 near sel distance 12
    7491 
    7492 > undo
    7493 
    7494 > hide #!3 models
    7495 
    7496 > show #!4 models
    7497 
    7498 > color zone #4 near sel distance 8
    7499 
    7500 > undo
    7501 
    7502 > color zone #4 near sel distance 8
    7503 
    7504 > show #!2 models
    7505 
    7506 > select add #2/w3:148
    7507 
    7508 298768 atoms, 324029 bonds, 5887 pseudobonds, 21822 residues, 5 models
    7509 selected 
    7510 
    7511 > select up
    7512 
    7513 298806 atoms, 324067 bonds, 5887 pseudobonds, 21827 residues, 5 models
    7514 selected 
    7515 
    7516 > select up
    7517 
    7518 300502 atoms, 325792 bonds, 5887 pseudobonds, 22038 residues, 5 models
    7519 selected 
    7520 
    7521 > color zone #4 near sel distance 8
    7522 
    7523 > hide #!6 models
    7524 
    7525 > hide #!4 models
    7526 
    7527 > hide #!2 models
    7528 
    7529 > select clear
    7530 
    7531 > show #!3 models
    7532 
    7533 > show #!4 models
    7534 
    7535 > show #!5 models
    7536 
    7537 > hide #!4 models
    7538 
    7539 > hide #!3 models
    7540 
    7541 > hide #!5 models
    7542 
    7543 > show #!5 models
    7544 
    7545 > show #!4 models
    7546 
    7547 > show #!3 models
    7548 
    7549 > volume #3-5 level 0.7
    7550 
    7551 > volume #3-5 level 0.65
    7552 
    7553 > volume #3-5 level 0.6
    7554 
    7555 > hide #!4 models
    7556 
    7557 > volume #3-5 level 0.7
    7558 
    7559 > volume #3-5 level 0.65
    7560 
    7561 > show #!4 models
    7562 
    7563 > save /Users/campbell/Desktop/Chimera_sessions/subunit_colouring.cxs
    7564 > includeMaps true
    7565 
    7566 ——— End of log from Thu Sep 12 05:33:16 2024 ———
    7567 
    7568 opened ChimeraX session 
    7569 
    7570 > open 6tnu
    7571 
    7572 6tnu title: 
    7573 Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
    7574 [more info...] 
    7575  
    7576 Chain information for 6tnu #7 
    7577 --- 
    7578 Chain | Description | UniProt 
    7579 2 | 18S rRNA |   
    7580 A | 40S ribosomal protein S3 | RS3_YEAST 4-225 
    7581 AA | 60S ribosomal protein L8-A | RL8A_YEAST 24-256 
    7582 AB | 60S ribosomal protein L23-A | RL23A_YEAST 2-137 
    7583 AC | 60S ribosomal protein L36-A | RL36A_YEAST 2-100 
    7584 AD | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    7585 AE | 60S ribosomal protein L24-A | RL24A_YEAST 1-126 
    7586 AF | 60S ribosomal protein L37-A | RL37A_YEAST 2-82 
    7587 AG | 60S ribosomal protein L11-B | RL11B_YEAST 6-174 
    7588 AH | 60S ribosomal protein L25 | RL25_YEAST 22-142 
    7589 AI | 60S ribosomal protein L38 | RL38_YEAST 2-78 
    7590 AJ | 60S ribosomal protein L13-A | RL13A_YEAST 2-194 
    7591 AK | 60S ribosomal protein L26-A | RL26A_YEAST 2-126 
    7592 AL | 60S ribosomal protein L39 | RL39_YEAST 2-51 
    7593 AM | 60S ribosomal protein L14-A | RL14A_YEAST 3-138 
    7594 AN | 60S ribosomal protein L27-A | RL27A_YEAST 2-136 
    7595 AO | Ubiquitin-60S ribosomal protein L40 | RL40A_YEAST 77-128 
    7596 AP | 60S ribosomal protein L42-A | RL44A_YEAST 2-104 
    7597 AQ | 60S ribosomal protein L15-A | RL15A_YEAST 2-204 
    7598 AR | 60S ribosomal protein L28 | RL28_YEAST 2-149 
    7599 AS | 60S ribosomal protein L41-A |   
    7600 AT | 60S ribosomal protein L43-A | RL43A_YEAST 2-92 
    7601 AU | 60S ribosomal protein L16-A | RL16A_YEAST 3-199 
    7602 AV | 60S ribosomal protein L29 | RL29_YEAST 2-59 
    7603 AW | 60S ribosomal protein L2-A | RL2A_YEAST 2-252 
    7604 AX | 60S ribosomal protein L17-A | RL17A_YEAST 2-184 
    7605 AY | 60S ribosomal protein L30 | RL30_YEAST 9-104 
    7606 B | Rps5p | A0A1L4AA68_YEASX 20-225 
    7607 BA | 60S ribosomal protein L3 | RL3_YEAST 2-387 
    7608 BB | 60S ribosomal protein L18-A | RL18A_YEAST 2-186 
    7609 BC | 60S ribosomal protein L31-A | RL31A_YEAST 4-112 
    7610 BD | 60S ribosomal protein L10 | RL10_YEAST 2-219 
    7611 BE | 60S ribosomal protein L4-A | RL4A_YEAST 2-362 
    7612 BF | 60S ribosomal protein L19-A | RL19A_YEAST 2-189 
    7613 BG | 60S ribosomal protein L32 | RL32_YEAST 2-128 
    7614 BH | 60S ribosomal protein L20-A | RL20A_YEAST 2-172 
    7615 BI | 60S ribosomal protein L5 | RL5_YEAST 4-297 
    7616 BJ | 60S ribosomal protein L21-A | RL21A_YEAST 2-160 
    7617 BK | 60S ribosomal protein L33-A | RL33A_YEAST 2-107 
    7618 BL | 60S ribosomal protein L22-A | RL22A_YEAST 9-108 
    7619 BM | 60S ribosomal protein L6-B | RL6B_YEAST 2-176 
    7620 BN | 60S ribosomal protein L34-A | RL34A_YEAST 2-113 
    7621 BO | 60S ribosomal protein L7-A | RL7A_YEAST 23-244 
    7622 BP | 60S ribosomal protein L35-A | RL35A_YEAST 2-120 
    7623 BQ | 25S rRNA |   
    7624 BR | 5S rRNA |   
    7625 BS | 5.8S rRNA |   
    7626 BT | 60S ribosomal protein L1 |   
    7627 C | 40S ribosomal protein S10-A | RS10A_YEAST 1-92 
    7628 D | 40S ribosomal protein S12 | RS12_YEAST 23-143 
    7629 E | 40S ribosomal protein S15 | RS15_YEAST 13-129 
    7630 F | 40S ribosomal protein S16-A | RS16A_YEAST 3-143 
    7631 G | 40S ribosomal protein S17-B | RS17B_YEAST 2-126 
    7632 H | 40S ribosomal protein S18-A | RS18A_YEAST 2-146 
    7633 I | 40S ribosomal protein S19-A | RS19A_YEAST 2-144 
    7634 J | 40S ribosomal protein S20 | RS20_YEAST 20-119 
    7635 K | 40S ribosomal protein S25-A | RS25A_YEAST 24-105 
    7636 L | 40S ribosomal protein S28-A | RS28A_YEAST 5-67 
    7637 M | 40S ribosomal protein S29-A | RS29A_YEAST 4-56 
    7638 N | Ubiquitin-40S ribosomal protein S31 | RS31_YEAST 80-152 
    7639 O | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 5-316 
    7640 P | 40S ribosomal protein S0-A | RSSA1_YEAS1 2-207 
    7641 Q | 40S ribosomal protein S1-A | RS3A1_YEAS1 2-233 
    7642 R | 40S ribosomal protein S2 | RS2_YEAST 34-249 
    7643 S | 40S ribosomal protein S4-A | RS4A_YEAST 2-259 
    7644 T | 40S ribosomal protein S6-A | RS6A_YEAST 1-228 
    7645 U | 40S ribosomal protein S7-A | RS7A_YEAST 4-187 
    7646 V | 40S ribosomal protein S8 | A0A0J9X221_LACKL 2-199 
    7647 W | 40S ribosomal protein S9-A | RS9A_YEAST 2-185 
    7648 X | 40S ribosomal protein S11-A | RS11A_YEAST 4-145 
    7649 Y | 40S ribosomal protein S13 | RS13_YEAST 2-151 
    7650 Z | 40S ribosomal protein S14-B | RS14B_YEAST 11-137 
    7651 a | 40S ribosomal protein S21-A | RS21A_YEAST 1-87 
    7652 b | 40S ribosomal protein S22-A | RS22A_YEAST 2-130 
    7653 c | 40S ribosomal protein S23-A | RS23A_YEAST 2-145 
    7654 d | 40S ribosomal protein S24-A | RS24A_YEAST 2-135 
    7655 e | 40S ribosomal protein S26-B | RS26B_YEAST 2-98 
    7656 eI | Eukaryotic translation initiation factor 5A-1 | IF5A1_YEAST 4-157 
    7657 f | 40S ribosomal protein S27-A | RS27A_YEAST 2-82 
    7658 g | 40S ribosomal protein S30-A | RS30A_YEAST 2-61 
    7659 l | mRNA |   
    7660 m | A-site tRNA |   
    7661 n | P-site tRNA |   
    7662  
    7663 Non-standard residues in 6tnu #7 
    7664 --- 
    7665 3HE —
    7666 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione 
    7667 SPD — spermidine (N-(2-amino-propyl)-1,4-diaminobutane; Pa(34)) 
    7668 ZN — zinc ion 
    7669  
    7670 1555 atoms have alternate locations. Control/examine alternate locations with
    7671 Altloc Explorer [start tool...] or the altlocs command. 
    7672 
    7673 > select #7/R:58@CD2
    7674 
    7675 1 atom, 1 residue, 1 model selected 
    7676 
    7677 > ui mousemode right "translate selected models"
    7678 
    7679 > view matrix models #7,1,0,0,92.926,0,1,0,123.36,0,0,1,-0.21597
    7680 
    7681 > view matrix models
    7682 > #7,-0.018958,0.9998,-0.0064026,77.573,-0.14881,-0.0091539,-0.98882,682,-0.98868,-0.017793,0.14895,464.55
    7683 
    7684 > view matrix models
    7685 > #7,-0.018958,0.9998,-0.0064026,-14.944,-0.14881,-0.0091539,-0.98882,548.82,-0.98868,-0.017793,0.14895,477.57
    7686 
    7687 > fitmap #7 inMap #50
    7688 
    7689 Fit molecule 6tnu (#7) to map Stable_60S.mrc (#50) using 204962 atoms 
    7690 average map value = 0.5466, steps = 112 
    7691 shifted from previous position = 9.4 
    7692 rotated from previous position = 9.88 degrees 
    7693 atoms outside contour = 89971, contour level = 0.6 
    7694  
    7695 Position of 6tnu (#7) relative to Stable_60S.mrc (#50) coordinates: 
    7696 Matrix rotation and translation 
    7697 0.15001217 0.98856074 0.01562163 -55.93626098 
    7698 -0.12363146 0.03443256 -0.99173065 526.76497245 
    7699 -0.98092387 0.14684034 0.12738251 442.08316198 
    7700 Axis 0.60630786 0.53067694 -0.59226072 
    7701 Axis point 0.00000000 38.71208624 502.13571468 
    7702 Rotation angle (degrees) 110.12603468 
    7703 Shift along axis -16.20106278 
    7704  
    7705 
    7706 > show #!58 models
    7707 
    7708 > hide #!58 models
    7709 
    7710 > hide #!7 models
    7711 
    7712 > hide #!5 models
    7713 
    7714 > hide #!4 models
    7715 
    7716 > hide #!3 models
    7717 
    7718 > show #!1 models
    7719 
    7720 > show #!58 models
    7721 
    7722 > hide #!58 models
    7723 
    7724 > show #!58 models
    7725 
    7726 > show #!59 models
    7727 
    7728 > hide #!58 models
    7729 
    7730 > show #!58 models
    7731 
    7732 > show #!61 models
    7733 
    7734 > hide #!59 models
    7735 
    7736 > hide #!58 models
    7737 
    7738 > show #!7 models
    7739 
    7740 > hide sel atoms
    7741 
    7742 > show sel cartoons
    7743 
    7744 > select clear
    7745 
    7746 > hide #!7,61 atoms
    7747 
    7748 > show #!7,61 cartoons
    7749 
    7750 > select #7/eI:138
    7751 
    7752 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7753 
    7754 > select up
    7755 
    7756 57 atoms, 56 bonds, 8 residues, 1 model selected 
    7757 
    7758 > select up
    7759 
    7760 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    7761 
    7762 > select ~sel & ##selected
    7763 
    7764 203819 atoms, 219024 bonds, 5230 pseudobonds, 16744 residues, 4 models
    7765 selected 
    7766 
    7767 > hide sel cartoons
    7768 
    7769 > select ~sel & ##selected
    7770 
    7771 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    7772 
    7773 > select #61/PSIT:45
    7774 
    7775 22 atoms, 24 bonds, 1 residue, 1 model selected 
    7776 
    7777 > select up
    7778 
    7779 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    7780 
    7781 > select up
    7782 
    7783 1650 atoms, 1836 bonds, 83 residues, 1 model selected 
    7784 
    7785 > select up
    7786 
    7787 207066 atoms, 221714 bonds, 17603 residues, 1 model selected 
    7788 
    7789 > select down
    7790 
    7791 1650 atoms, 1836 bonds, 83 residues, 1 model selected 
    7792 
    7793 > color sel #76d6ffff
    7794 
    7795 > select add #61
    7796 
    7797 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    7798 selected 
    7799 
    7800 > select #7/eI:91
    7801 
    7802 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7803 
    7804 > select up
    7805 
    7806 38 atoms, 38 bonds, 4 residues, 1 model selected 
    7807 
    7808 > select up
    7809 
    7810 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    7811 
    7812 > select add #61
    7813 
    7814 208209 atoms, 222872 bonds, 5069 pseudobonds, 17757 residues, 5 models
    7815 selected 
    7816 
    7817 > select subtract /PSIT
    7818 
    7819 206559 atoms, 221036 bonds, 4995 pseudobonds, 17674 residues, 5 models
    7820 selected 
    7821 
    7822 > select subtract /aSIT
    7823 
    7824 206559 atoms, 221036 bonds, 4995 pseudobonds, 17674 residues, 5 models
    7825 selected 
    7826 
    7827 > ui tool show "Color Zone"
    7828 
    7829 > color zone #1 near #61 distance 4
    7830 
    7831 > color zone #1 near sel distance 4
    7832 
    7833 > color zone #1 near sel distance 12
    7834 
    7835 > color zone #1 near sel distance 20
    7836 
    7837 [Repeated 1 time(s)]
    7838 
    7839 > color zone #1 near sel distance 21
    7840 
    7841 > color zone #1 near sel distance 22
    7842 
    7843 > color zone #1 near sel distance 23
    7844 
    7845 > color zone #1 near sel distance 24
    7846 
    7847 > hide #!1 models
    7848 
    7849 > show #!1 models
    7850 
    7851 > hide #!1 models
    7852 
    7853 > show #!1 models
    7854 
    7855 > select add #7
    7856 
    7857 410378 atoms, 440060 bonds, 10225 pseudobonds, 34418 residues, 8 models
    7858 selected 
    7859 
    7860 > select add #61
    7861 
    7862 412028 atoms, 441896 bonds, 10299 pseudobonds, 34501 residues, 8 models
    7863 selected 
    7864 
    7865 > select subtract #61
    7866 
    7867 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    7868 selected 
    7869 
    7870 > show sel cartoons
    7871 
    7872 > select #7/BT:140
    7873 
    7874 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7875 
    7876 > select up
    7877 
    7878 60 atoms, 59 bonds, 12 residues, 1 model selected 
    7879 
    7880 > select up
    7881 
    7882 1050 atoms, 1049 bonds, 210 residues, 1 model selected 
    7883 
    7884 > select up
    7885 
    7886 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    7887 
    7888 > select down
    7889 
    7890 1050 atoms, 1049 bonds, 210 residues, 1 model selected 
    7891 
    7892 > color sel #7a81ffff
    7893 
    7894 > color sel #76d6ffff
    7895 
    7896 > select #7/eI:151
    7897 
    7898 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7899 
    7900 > select add #61/ASIT:40
    7901 
    7902 29 atoms, 29 bonds, 2 residues, 2 models selected 
    7903 
    7904 > select up
    7905 
    7906 1707 atoms, 1898 bonds, 85 residues, 2 models selected 
    7907 
    7908 > select up
    7909 
    7910 2779 atoms, 2985 bonds, 230 residues, 2 models selected 
    7911 
    7912 > select up
    7913 
    7914 2780 atoms, 2985 bonds, 231 residues, 2 models selected 
    7915 
    7916 > select add #7/BT:140
    7917 
    7918 2785 atoms, 2989 bonds, 232 residues, 2 models selected 
    7919 
    7920 > select up
    7921 
    7922 2840 atoms, 3044 bonds, 243 residues, 2 models selected 
    7923 
    7924 > select up
    7925 
    7926 3830 atoms, 4034 bonds, 441 residues, 2 models selected 
    7927 
    7928 > select ~sel & ##selected
    7929 
    7930 408198 atoms, 437862 bonds, 10264 pseudobonds, 34060 residues, 8 models
    7931 selected 
    7932 
    7933 > hide sel cartoons
    7934 
    7935 > hide #!61 models
    7936 
    7937 > show #!61 models
    7938 
    7939 > select add #61
    7940 
    7941 409835 atoms, 439689 bonds, 10299 pseudobonds, 34137 residues, 8 models
    7942 selected 
    7943 
    7944 > select add #7/BT:139
    7945 
    7946 409840 atoms, 439693 bonds, 10299 pseudobonds, 34138 residues, 8 models
    7947 selected 
    7948 
    7949 > select add #7/eI:140
    7950 
    7951 409846 atoms, 439698 bonds, 10299 pseudobonds, 34139 residues, 8 models
    7952 selected 
    7953 
    7954 > select up
    7955 
    7956 409952 atoms, 439804 bonds, 10299 pseudobonds, 34157 residues, 8 models
    7957 selected 
    7958 
    7959 > select up
    7960 
    7961 412028 atoms, 441896 bonds, 10299 pseudobonds, 34501 residues, 8 models
    7962 selected 
    7963 
    7964 > select subtract /ASIT
    7965 
    7966 410391 atoms, 440069 bonds, 10250 pseudobonds, 34424 residues, 8 models
    7967 selected 
    7968 
    7969 > color zone #1 near sel distance 24
    7970 
    7971 > select subtract #7
    7972 
    7973 205429 atoms, 219887 bonds, 5020 pseudobonds, 17526 residues, 4 models
    7974 selected 
    7975 
    7976 > select add #7/BT:140
    7977 
    7978 205434 atoms, 219891 bonds, 5020 pseudobonds, 17527 residues, 7 models
    7979 selected 
    7980 
    7981 > select add #7/eI:139
    7982 
    7983 205442 atoms, 219898 bonds, 5020 pseudobonds, 17528 residues, 7 models
    7984 selected 
    7985 
    7986 > select up
    7987 
    7988 205546 atoms, 220002 bonds, 5020 pseudobonds, 17546 residues, 7 models
    7989 selected 
    7990 
    7991 > select up
    7992 
    7993 207622 atoms, 222094 bonds, 5020 pseudobonds, 17890 residues, 7 models
    7994 selected 
    7995 
    7996 > color zone #1 near sel distance 24
    7997 
    7998 > lighting simple
    7999 
    8000 > select #7/eI:45
    8001 
    8002 6 atoms, 5 bonds, 1 residue, 1 model selected 
    8003 
    8004 > select up
    8005 
    8006 92 atoms, 92 bonds, 12 residues, 1 model selected 
    8007 
    8008 > select up
    8009 
    8010 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    8011 
    8012 > color sel #7a81ffff
    8013 
    8014 > color sel #d783ffff
    8015 
    8016 > color sel #0433ffff
    8017 
    8018 > color sel #7a81ffff
    8019 
    8020 > color sel #d783ffff
    8021 
    8022 > color sel #ff85ffff
    8023 
    8024 > color sel #d783ffff
    8025 
    8026 > color sel #7a81ffff
    8027 
    8028 > select add #7/BT:69
    8029 
    8030 1148 atoms, 1162 bonds, 155 residues, 1 model selected 
    8031 
    8032 > select up
    8033 
    8034 1198 atoms, 1212 bonds, 165 residues, 1 model selected 
    8035 
    8036 > select up
    8037 
    8038 2193 atoms, 2207 bonds, 364 residues, 1 model selected 
    8039 
    8040 > select add #61
    8041 
    8042 209259 atoms, 223921 bonds, 5069 pseudobonds, 17967 residues, 5 models
    8043 selected 
    8044 
    8045 > select subtract /ASIT
    8046 
    8047 207622 atoms, 222094 bonds, 5020 pseudobonds, 17890 residues, 5 models
    8048 selected 
    8049 
    8050 > color zone #1 near sel distance 24
    8051 
    8052 > show sel cartoons
    8053 
    8054 > select subtract /PSIT
    8055 
    8056 205972 atoms, 220258 bonds, 4946 pseudobonds, 17807 residues, 5 models
    8057 selected 
    8058 
    8059 > color zone #1 near sel distance 24
    8060 
    8061 > show #!58 models
    8062 
    8063 > select add #58/12:32
    8064 
    8065 205980 atoms, 220265 bonds, 4946 pseudobonds, 17808 residues, 6 models
    8066 selected 
    8067 
    8068 > select up
    8069 
    8070 206042 atoms, 220328 bonds, 4946 pseudobonds, 17816 residues, 6 models
    8071 selected 
    8072 
    8073 > select up
    8074 
    8075 206907 atoms, 221201 bonds, 4946 pseudobonds, 17931 residues, 6 models
    8076 selected 
    8077 
    8078 > select up
    8079 
    8080 621164 atoms, 666615 bonds, 5069 pseudobonds, 51583 residues, 6 models
    8081 selected 
    8082 
    8083 > color zone #1 near sel distance 24
    8084 
    8085 > select down
    8086 
    8087 206907 atoms, 221201 bonds, 4946 pseudobonds, 17931 residues, 6 models
    8088 selected 
    8089 
    8090 > select subtract /1S
    8091 
    8092 206907 atoms, 221201 bonds, 4946 pseudobonds, 17931 residues, 6 models
    8093 selected 
    8094 
    8095 > select subtract /12
    8096 
    8097 205972 atoms, 220258 bonds, 4946 pseudobonds, 17807 residues, 5 models
    8098 selected 
    8099 
    8100 > hide #!7 models
    8101 
    8102 > hide #!58 models
    8103 
    8104 > hide #!61 models
    8105 
    8106 > select add #61
    8107 
    8108 209259 atoms, 223921 bonds, 5069 pseudobonds, 17967 residues, 5 models
    8109 selected 
    8110 
    8111 > select add #7
    8112 
    8113 412028 atoms, 441896 bonds, 10299 pseudobonds, 34501 residues, 8 models
    8114 selected 
    8115 
    8116 > select subtract #61
    8117 
    8118 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    8119 selected 
    8120 
    8121 > select subtract #7
    8122 
    8123 Nothing selected 
    8124 
    8125 > hide #!1 models
    8126 
    8127 > show #!1 models
    8128 
    8129 > show #!58 models
    8130 
    8131 > select add #58/1S:1225
    8132 
    8133 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8134 
    8135 > show #!7 models
    8136 
    8137 > select add #7/BT:70
    8138 
    8139 25 atoms, 25 bonds, 2 residues, 2 models selected 
    8140 
    8141 > select add #7/eI:138
    8142 
    8143 33 atoms, 32 bonds, 3 residues, 2 models selected 
    8144 
    8145 > select up
    8146 
    8147 38061 atoms, 42555 bonds, 1800 residues, 2 models selected 
    8148 
    8149 > select up
    8150 
    8151 40142 atoms, 44652 bonds, 2145 residues, 2 models selected 
    8152 
    8153 > show #!61 models
    8154 
    8155 > select add #61
    8156 
    8157 247208 atoms, 266366 bonds, 5069 pseudobonds, 19748 residues, 6 models
    8158 selected 
    8159 
    8160 > select subtract /ASIT
    8161 
    8162 245571 atoms, 264539 bonds, 5020 pseudobonds, 19671 residues, 6 models
    8163 selected 
    8164 
    8165 > select subtract /PSIT
    8166 
    8167 243921 atoms, 262703 bonds, 4946 pseudobonds, 19588 residues, 6 models
    8168 selected 
    8169 
    8170 > color zone #1 near sel distance 24
    8171 
    8172 > hide #!7 models
    8173 
    8174 > hide #!58 models
    8175 
    8176 > hide #!61 models
    8177 
    8178 > volume #1 level 0.7334
    8179 
    8180 > volume #1 level 0.77
    8181 
    8182 > volume level 0.77
    8183 
    8184 > show #!3 models
    8185 
    8186 > hide #!1 models
    8187 
    8188 > volume level 0.7
    8189 
    8190 > volume level 0.65
    8191 
    8192 > volume level 0.66
    8193 
    8194 > volume level 0.
    8195 
    8196 > volume level 0.6
    8197 
    8198 > show #!1 models
    8199 
    8200 > hide #!3 models
    8201 
    8202 > show #!3 models
    8203 
    8204 > hide #!1 models
    8205 
    8206 > show #!4 models
    8207 
    8208 > show #!5 models
    8209 
    8210 > hide #!5 models
    8211 
    8212 > hide #!4 models
    8213 
    8214 > show #!1 models
    8215 
    8216 > volume #1 level 0.6627
    8217 
    8218 > volume #1 level 0.6
    8219 
    8220 > volume #1 level 0.7
    8221 
    8222 > volume #1 level 0.75
    8223 
    8224 > hide #!3 models
    8225 
    8226 > show #!3 models
    8227 
    8228 > hide #!3 models
    8229 
    8230 > volume #1 level 0.6
    8231 
    8232 > show #!3 models
    8233 
    8234 > hide #!1 models
    8235 
    8236 > volume level 0.65
    8237 
    8238 > show #!1 models
    8239 
    8240 > hide #!3 models
    8241 
    8242 > hide #!1 models
    8243 
    8244 > show #!3 models
    8245 
    8246 > hide #!3 models
    8247 
    8248 > show #!4 models
    8249 
    8250 > show #!1 models
    8251 
    8252 > hide #!4 models
    8253 
    8254 > show #!3 models
    8255 
    8256 > hide #!1 models
    8257 
    8258 > show #!4 models
    8259 
    8260 > hide #!3 models
    8261 
    8262 > show #!5 models
    8263 
    8264 > show #!3 models
    8265 
    8266 > hide #!4 models
    8267 
    8268 > hide #!3 models
    8269 
    8270 > hide #!5 models
    8271 
    8272 > show #!3 models
    8273 
    8274 > show #!4 models
    8275 
    8276 > hide #!3 models
    8277 
    8278 > show #!6 models
    8279 
    8280 > select clear
    8281 
    8282 > select add #4
    8283 
    8284 2 models selected 
    8285 
    8286 > select subtract /3
    8287 
    8288 2 models selected 
    8289 
    8290 > select subtract /3
    8291 
    8292 2 models selected 
    8293 
    8294 > select subtract #6/3
    8295 
    8296 2 models selected 
    8297 
    8298 > select subtract \3
    8299 
    8300 Expected an objects specifier or a keyword 
    8301 
    8302 > select subtract /3
    8303 
    8304 2 models selected 
    8305 
    8306 > select clear
    8307 
    8308 > select #6
    8309 
    8310 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    8311 selected 
    8312 
    8313 > log metadata #6
    8314 
    8315 No models had metadata
    8316 
    8317 > log chains #6
    8318 
    8319 Chain information for 5lzs #6 
    8320 --- 
    8321 Chain | Description | UniProt 
    8322 2 ii | tRNA |   
    8323 3 | E-site tRNA |   
    8324 5 | 28S ribosomal RNA |   
    8325 7 | 5S ribosomal RNA |   
    8326 8 | 5.8S ribosomal RNA |   
    8327 9 | 18S ribosomal RNA |   
    8328 A | uL2 | G1TT27_RABIT 1-257 
    8329 AA | uS2 |   
    8330 B | uL3 | G1TL06_RABIT 2-403 
    8331 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    8332 C | uL4 | G1SVW5_RABIT 1-378 
    8333 CC | uS5 |   
    8334 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    8335 DD | uS4 | G1TNM3_RABIT 1-243 
    8336 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    8337 EE | 40S ribosomal protein S4 |   
    8338 F | uL30 | G1TUB1_RABIT 1-247 
    8339 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    8340 G | eL8 | G1STW0_RABIT 78-319 
    8341 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    8342 H | uL6 | G1TX33_RABIT 1-192 
    8343 HH | uS7 | G1SVB0_RABIT 1-194 
    8344 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    8345 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    8346 J | uL5 | G1TUB8_RABIT 1-178 
    8347 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    8348 KK | eS10 | G1TPV3_RABIT 1-165 
    8349 L | eL13 |   
    8350 LL | uS17 | G1TRM4_RABIT 1-158 
    8351 M | eL14 | G1SZ12_RABIT 1-218 
    8352 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    8353 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    8354 NN | uS15 | G1SP51_RABIT 1-151 
    8355 O | uL13 |   
    8356 OO | uS11 | G1T1F0_RABIT -4-151 
    8357 P | uL22 | G1TVT6_RABIT 1-184 
    8358 PP | uS19 | G1U0Q2_RABIT 1-145 
    8359 Q | eL18 |   
    8360 QQ | uS9 | G1SGX4_RABIT 1-146 
    8361 R | eL19 |   
    8362 RR | eS17 | G1TU13_RABIT 1-135 
    8363 S | eL20 |   
    8364 SS | uS13 | G1TPG3_RABIT 1-152 
    8365 T | eL21 | G1SHQ2_RABIT 1-160 
    8366 TT | eS19 | G1TN62_RABIT 1-145 
    8367 U | eL22 |   
    8368 UU | uS10 | G1SIZ2_RABIT 1-119 
    8369 V | uL14 | G1T6D1_RABIT 1-140 
    8370 VV | eS21 |   
    8371 W | uL24 | G1SE28_RABIT 1-157 
    8372 WW | uS8 | G1TG89_RABIT 1-130 
    8373 X | uL23 | G1SE76_RABIT 1-156 
    8374 XX | uS12 |   
    8375 Y | uL24 | G1SQH0_RABIT 1-145 
    8376 YY | eS24 |   
    8377 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    8378 ZZ | eS25 | G1TDB3_RABIT 1-125 
    8379 a | uL15 | G1SNY0_RABIT 1-148 
    8380 aa | eS26 |   
    8381 b | eL29 | G1SGR6_RABIT 1-226 
    8382 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    8383 c | eL30 | G1TDL2_RABIT 1-115 
    8384 cc | eS28 | G1TIB4_RABIT 1-69 
    8385 d | eL31 | G1SHG0_RABIT 1-125 
    8386 dd | uS14 | G1U7M4_RABIT 1-56 
    8387 e | eL32 | G1U437_RABIT 1-135 
    8388 ee | eS30 | G1T8A2_RABIT 0-132 
    8389 f | eL33 | G1SF08_RABIT 1-110 
    8390 ff | eS31 | G1SK22_RABIT 1-156 
    8391 g | eL34 | G1U945_RABIT 1-116 
    8392 gg | RACK1 | G1SJB4_RABIT 1-317 
    8393 h | uL29 | G1SIT5_RABIT 1-123 
    8394 hh | mRNA |   
    8395 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    8396 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    8397 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    8398 k | eL38 |   
    8399 l | eL39 | G1TTN1_RABIT 1-51 
    8400 m | eL40 |   
    8401 n | 60s ribosomal protein l41 |   
    8402 o | eL42 | G1U344_RABIT 1-106 
    8403 p | eL43 | G1SY53_RABIT 1-92 
    8404 r | eL28 | G1U7L1_RABIT 1-137 
    8405 s | uL10 |   
    8406 t | uL11 | G1SMR7_RABIT 1-165 
    8407  
    8408 
    8409 > select subtract /3
    8410 
    8411 219341 atoms, 235173 bonds, 5821 pseudobonds, 18111 residues, 4 models
    8412 selected 
    8413 
    8414 > color zone #4 near sel distance 24
    8415 
    8416 [Repeated 1 time(s)]
    8417 
    8418 > show #!59 models
    8419 
    8420 > select add #59
    8421 
    8422 427092 atoms, 458280 bonds, 10249 pseudobonds, 35175 residues, 7 models
    8423 selected 
    8424 
    8425 > select subtract /PT
    8426 
    8427 425448 atoms, 456444 bonds, 10172 pseudobonds, 35098 residues, 7 models
    8428 selected 
    8429 
    8430 > color zone #4 near sel distance 24
    8431 
    8432 [Repeated 1 time(s)]
    8433 
    8434 > select clear
    8435 
    8436 > color #4 darkgrey models
    8437 
    8438 No atoms selected for color zoning 
    8439 
    8440 > undo
    8441 
    8442 [Repeated 1 time(s)]
    8443 
    8444 > color zone #4 near sel distance 24
    8445 
    8446 > hide #!4 models
    8447 
    8448 > show #!5 models
    8449 
    8450 > hide #!6 models
    8451 
    8452 > show #!4 models
    8453 
    8454 > show #!3 models
    8455 
    8456 > hide #!4 models
    8457 
    8458 > hide #!5 models
    8459 
    8460 > hide #!59 models
    8461 
    8462 > select add #59
    8463 
    8464 427092 atoms, 458280 bonds, 10249 pseudobonds, 35175 residues, 7 models
    8465 selected 
    8466 
    8467 > select add #6
    8468 
    8469 428685 atoms, 460059 bonds, 10315 pseudobonds, 35250 residues, 7 models
    8470 selected 
    8471 
    8472 > hide #!3 models
    8473 
    8474 > select subtract #6
    8475 
    8476 207751 atoms, 223107 bonds, 4428 pseudobonds, 17064 residues, 3 models
    8477 selected 
    8478 
    8479 > select subtract #59
    8480 
    8481 Nothing selected 
    8482 
    8483 > show #!7 models
    8484 
    8485 > show #!6 models
    8486 
    8487 > show #!5 models
    8488 
    8489 > hide #!6 models
    8490 
    8491 > show #!50 models
    8492 
    8493 > hide #!50 models
    8494 
    8495 > color #5 #929292ff models
    8496 
    8497 > select add #7/BT:139
    8498 
    8499 5 atoms, 4 bonds, 1 residue, 1 model selected 
    8500 
    8501 > select add #7/eI:145
    8502 
    8503 14 atoms, 12 bonds, 2 residues, 1 model selected 
    8504 
    8505 > select up
    8506 
    8507 131 atoms, 130 bonds, 21 residues, 1 model selected 
    8508 
    8509 > select up
    8510 
    8511 2193 atoms, 2207 bonds, 364 residues, 1 model selected 
    8512 
    8513 > show #!58 models
    8514 
    8515 > color #5 darkgrey models
    8516 
    8517 > hide #!5 models
    8518 
    8519 > show #!61 models
    8520 
    8521 > hide #!61 models
    8522 
    8523 > show #!59 models
    8524 
    8525 > hide #!59 models
    8526 
    8527 > show #!60 models
    8528 
    8529 > hide #!60 models
    8530 
    8531 > show #!6 models
    8532 
    8533 > hide #!6 models
    8534 
    8535 > hide #!7 models
    8536 
    8537 > show #!7 models
    8538 
    8539 > select add #7
    8540 
    8541 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    8542 selected 
    8543 
    8544 > show sel cartoons
    8545 
    8546 > select #7/m:45
    8547 
    8548 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8549 
    8550 > select up
    8551 
    8552 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    8553 
    8554 > select up
    8555 
    8556 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    8557 
    8558 > color sel red
    8559 
    8560 > undo
    8561 
    8562 > select #7/m:45
    8563 
    8564 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8565 
    8566 > select up
    8567 
    8568 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    8569 
    8570 > color sel red
    8571 
    8572 > select add #7/eI:39
    8573 
    8574 1617 atoms, 1804 bonds, 77 residues, 1 model selected 
    8575 
    8576 > select add #7/BT:138
    8577 
    8578 1622 atoms, 1808 bonds, 78 residues, 1 model selected 
    8579 
    8580 > select up
    8581 
    8582 1763 atoms, 1950 bonds, 100 residues, 1 model selected 
    8583 
    8584 > select up
    8585 
    8586 3804 atoms, 4006 bonds, 440 residues, 1 model selected 
    8587 
    8588 > select ~sel & ##selected
    8589 
    8590 201158 atoms, 216176 bonds, 5162 pseudobonds, 16458 residues, 4 models
    8591 selected 
    8592 
    8593 > hide sel cartoons
    8594 
    8595 > select ~sel & ##selected
    8596 
    8597 3804 atoms, 4006 bonds, 68 pseudobonds, 440 residues, 2 models selected 
    8598 
    8599 > select add #58
    8600 
    8601 212940 atoms, 228725 bonds, 4581 pseudobonds, 17522 residues, 5 models
    8602 selected 
    8603 
    8604 > show #!5 models
    8605 
    8606 > color zone #5 near sel distance 24
    8607 
    8608 > select #7/m:45
    8609 
    8610 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8611 
    8612 > select up
    8613 
    8614 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    8615 
    8616 > select up
    8617 
    8618 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    8619 
    8620 > select down
    8621 
    8622 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    8623 
    8624 > color sel orange red
    8625 
    8626 > hide #!5 models
    8627 
    8628 Drag select of 17522 residues, 11 pseudobonds 
    8629 
    8630 > show #!5 models
    8631 
    8632 > color zone #5 near sel distance 24
    8633 
    8634 > hide #!7 models
    8635 
    8636 > hide #!58 models
    8637 
    8638 > save
    8639 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/subunit_colouring.cxs
    8640 > includeMaps true
    8641 
    8642 ——— End of log from Tue Sep 24 13:28:01 2024 ———
    8643 
    8644 opened ChimeraX session 
    8645 
    8646 > show #!2 models
    8647 
    8648 > hide #!2 models
    8649 
    8650 > close #1,3-5
    8651 
    8652 > show #!2 models
    8653 
    8654 > hide #!2 models
    8655 
    8656 > rename #2 ID #51
    8657 
    8658 Expected a keyword 
    8659 
    8660 > rename #2 id #51
    8661 
    8662 > rename #6 id #52
    8663 
    8664 > rename #7 id #53
    8665 
    8666 > open
    8667 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/1/MultiPostProcessor_PPout_1.mrc
    8668 
    8669 Opened MultiPostProcessor_PPout_1.mrc as #1, grid size 128,128,128, pixel 4,
    8670 shown at level 0.814, step 1, values float32 
    8671 
    8672 > open
    8673 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/2/MultiPostProcessor_PPout_2.mrc
    8674 
    8675 Opened MultiPostProcessor_PPout_2.mrc as #2, grid size 128,128,128, pixel 4,
    8676 shown at level 0.879, step 1, values float32 
    8677 
    8678 > open
    8679 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/3/MultiPostProcessor_PPout_3.mrc
    8680 
    8681 Opened MultiPostProcessor_PPout_3.mrc as #3, grid size 128,128,128, pixel 4,
    8682 shown at level 0.948, step 1, values float32 
    8683 
    8684 > open
    8685 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/4/MultiPostProcessor_PPout_4.mrc
    8686 
    8687 Opened MultiPostProcessor_PPout_4.mrc as #4, grid size 128,128,128, pixel 4,
    8688 shown at level 0.794, step 1, values float32 
    8689 
    8690 > open
    8691 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/5/MultiPostProcessor_PPout_5.mrc
    8692 
    8693 Opened MultiPostProcessor_PPout_5.mrc as #5, grid size 128,128,128, pixel 4,
    8694 shown at level 0.914, step 1, values float32 
    8695 
    8696 > open
    8697 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/6/MultiPostProcessor_PPout_6.mrc
    8698 
    8699 Opened MultiPostProcessor_PPout_6.mrc as #6, grid size 128,128,128, pixel 4,
    8700 shown at level 0.951, step 1, values float32 
    8701 
    8702 > open
    8703 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/7/MultiPostProcessor_PPout_7.mrc
    8704 
    8705 Opened MultiPostProcessor_PPout_7.mrc as #7, grid size 128,128,128, pixel 4,
    8706 shown at level 0.831, step 1, values float32 
    8707 
    8708 > open
    8709 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/8/MultiPostProcessor_PPout_8.mrc
    8710 
    8711 Opened MultiPostProcessor_PPout_8.mrc as #8, grid size 128,128,128, pixel 4,
    8712 shown at level 0.868, step 1, values float32 
    8713 
    8714 > open
    8715 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/9/MultiPostProcessor_PPout_9.mrc
    8716 
    8717 Opened MultiPostProcessor_PPout_9.mrc as #9, grid size 128,128,128, pixel 4,
    8718 shown at level 0.845, step 1, values float32 
    8719 
    8720 > open
    8721 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/160_APE_T8/10/MultiPostProcessor_PPout_10.mrc
    8722 
    8723 Opened MultiPostProcessor_PPout_10.mrc as #10, grid size 128,128,128, pixel 4,
    8724 shown at level 0.911, step 1, values float32 
    8725 
    8726 > select up
    8727 
    8728 414098 atoms, 444901 bonds, 11 pseudobonds, 33980 residues, 3 models selected 
    8729 
    8730 > select up
    8731 
    8732 414098 atoms, 444901 bonds, 4513 pseudobonds, 33980 residues, 4 models
    8733 selected 
    8734 
    8735 > select up
    8736 
    8737 414098 atoms, 444901 bonds, 4513 pseudobonds, 33980 residues, 4 models
    8738 selected 
    8739 
    8740 > select up
    8741 
    8742 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8743 selected 
    8744 
    8745 > select up
    8746 
    8747 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8748 selected 
    8749 
    8750 > select up
    8751 
    8752 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8753 selected 
    8754 
    8755 > select up
    8756 
    8757 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8758 selected 
    8759 
    8760 > select up
    8761 
    8762 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8763 selected 
    8764 
    8765 > select up
    8766 
    8767 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8768 selected 
    8769 
    8770 > select up
    8771 
    8772 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 31 models
    8773 selected 
    8774 
    8775 > volume #1-49 level 0.6
    8776 
    8777 > select clear
    8778 
    8779 > fitmap #1-49 inMap #50 eachModel true
    8780 
    8781 Fit map MultiPostProcessor_PPout_1.mrc in map Stable_60S.mrc using 61817
    8782 points 
    8783 correlation = 0.7951, correlation about mean = 0.2961, overlap = 2.624e+04 
    8784 steps = 112, shift = 2.98, angle = 0.818 degrees 
    8785  
    8786 Position of MultiPostProcessor_PPout_1.mrc (#1) relative to Stable_60S.mrc
    8787 (#50) coordinates: 
    8788 Matrix rotation and translation 
    8789 0.99999478 -0.00311186 0.00087074 -0.14379447 
    8790 0.00312366 0.99989855 -0.01389700 1.47273619 
    8791 -0.00082740 0.01389965 0.99990305 -5.78123811 
    8792 Axis 0.97402137 0.05950434 0.21849854 
    8793 Axis point 0.00000000 396.00399632 108.71750420 
    8794 Rotation angle (degrees) 0.81758223 
    8795 Shift along axis -1.31561680 
    8796  
    8797 Fit map MultiPostProcessor_PPout_2.mrc in map Stable_60S.mrc using 61494
    8798 points 
    8799 correlation = 0.7972, correlation about mean = 0.3714, overlap = 2.908e+04 
    8800 steps = 64, shift = 0.644, angle = 0.506 degrees 
    8801  
    8802 Position of MultiPostProcessor_PPout_2.mrc (#2) relative to Stable_60S.mrc
    8803 (#50) coordinates: 
    8804 Matrix rotation and translation 
    8805 0.99996222 0.00819146 0.00290805 -2.97912285 
    8806 -0.00818683 0.99996521 -0.00160000 2.16480691 
    8807 -0.00292106 0.00157613 0.99999449 -0.18911667 
    8808 Axis 0.17972266 0.32984235 -0.92677062 
    8809 Axis point 248.58380136 372.59760019 0.00000000 
    8810 Rotation angle (degrees) 0.50628434 
    8811 Shift along axis 0.35389688 
    8812  
    8813 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 65267
    8814 points 
    8815 correlation = 0.7898, correlation about mean = 0.3761, overlap = 3.186e+04 
    8816 steps = 88, shift = 0.243, angle = 0.7 degrees 
    8817  
    8818 Position of MultiPostProcessor_PPout_3.mrc (#3) relative to Stable_60S.mrc
    8819 (#50) coordinates: 
    8820 Matrix rotation and translation 
    8821 0.99995276 -0.00828852 -0.00507807 3.09149523 
    8822 0.00825064 0.99993832 -0.00743584 -0.18987311 
    8823 0.00513939 0.00739360 0.99995946 -3.15144080 
    8824 Axis 0.60649564 -0.41787482 0.67641975 
    8825 Axis point 34.88087020 385.76547138 0.00000000 
    8826 Rotation angle (degrees) 0.70048778 
    8827 Shift along axis -0.17737525 
    8828  
    8829 Fit map MultiPostProcessor_PPout_4.mrc in map Stable_60S.mrc using 59877
    8830 points 
    8831 correlation = 0.8022, correlation about mean = 0.3078, overlap = 2.557e+04 
    8832 steps = 88, shift = 2.34, angle = 0.278 degrees 
    8833  
    8834 Position of MultiPostProcessor_PPout_4.mrc (#4) relative to Stable_60S.mrc
    8835 (#50) coordinates: 
    8836 Matrix rotation and translation 
    8837 0.99999430 -0.00050675 0.00333951 -1.63531040 
    8838 0.00051839 0.99999380 -0.00348431 0.47759630 
    8839 -0.00333772 0.00348603 0.99998835 -2.16532846 
    8840 Axis 0.71808864 0.68789181 0.10561046 
    8841 Axis point 0.00000000 589.75777236 348.14276568 
    8842 Rotation angle (degrees) 0.27808029 
    8843 Shift along axis -1.07444458 
    8844  
    8845 Fit map MultiPostProcessor_PPout_5.mrc in map Stable_60S.mrc using 59232
    8846 points 
    8847 correlation = 0.7949, correlation about mean = 0.3447, overlap = 2.973e+04 
    8848 steps = 84, shift = 0.774, angle = 0.648 degrees 
    8849  
    8850 Position of MultiPostProcessor_PPout_5.mrc (#5) relative to Stable_60S.mrc
    8851 (#50) coordinates: 
    8852 Matrix rotation and translation 
    8853 0.99996317 -0.00455944 0.00727169 -0.49148603 
    8854 0.00450574 0.99996259 0.00738415 -2.31152776 
    8855 -0.00730509 -0.00735111 0.99994630 3.19487684 
    8856 Axis -0.65134764 0.64434199 0.40071144 
    8857 Axis point 0.00000000 426.19068196 324.87901058 
    8858 Rotation angle (degrees) 0.64810733 
    8859 Shift along axis 0.11093758 
    8860  
    8861 Fit map MultiPostProcessor_PPout_6.mrc in map Stable_60S.mrc using 63888
    8862 points 
    8863 correlation = 0.7961, correlation about mean = 0.385, overlap = 3.227e+04 
    8864 steps = 84, shift = 0.259, angle = 0.371 degrees 
    8865  
    8866 Position of MultiPostProcessor_PPout_6.mrc (#6) relative to Stable_60S.mrc
    8867 (#50) coordinates: 
    8868 Matrix rotation and translation 
    8869 0.99997996 -0.00591460 -0.00225561 1.84682685 
    8870 0.00591152 0.99998159 -0.00137194 -0.95106575 
    8871 0.00226368 0.00135858 0.99999652 -1.01216912 
    8872 Axis 0.21082917 -0.34894394 0.91312058 
    8873 Axis point 173.85950933 318.89584750 0.00000000 
    8874 Rotation angle (degrees) 0.37103057 
    8875 Shift along axis -0.20299885 
    8876  
    8877 Fit map MultiPostProcessor_PPout_7.mrc in map Stable_60S.mrc using 63186
    8878 points 
    8879 correlation = 0.808, correlation about mean = 0.3509, overlap = 2.777e+04 
    8880 steps = 88, shift = 1.94, angle = 0.176 degrees 
    8881  
    8882 Position of MultiPostProcessor_PPout_7.mrc (#7) relative to Stable_60S.mrc
    8883 (#50) coordinates: 
    8884 Matrix rotation and translation 
    8885 0.99999794 -0.00202123 0.00018305 -0.59615874 
    8886 0.00202165 0.99999530 -0.00230642 0.56671006 
    8887 -0.00017839 0.00230679 0.99999732 -2.07649320 
    8888 Axis 0.75076350 0.05882043 0.65794705 
    8889 Axis point 0.00000000 392.67578006 290.31562031 
    8890 Rotation angle (degrees) 0.17603280 
    8891 Shift along axis -1.78046267 
    8892  
    8893 Fit map MultiPostProcessor_PPout_8.mrc in map Stable_60S.mrc using 60436
    8894 points 
    8895 correlation = 0.8012, correlation about mean = 0.3659, overlap = 2.864e+04 
    8896 steps = 140, shift = 0.632, angle = 0.803 degrees 
    8897  
    8898 Position of MultiPostProcessor_PPout_8.mrc (#8) relative to Stable_60S.mrc
    8899 (#50) coordinates: 
    8900 Matrix rotation and translation 
    8901 0.99995071 -0.00669777 -0.00732934 2.95979137 
    8902 0.00662503 0.99992900 -0.00990496 0.67021516 
    8903 0.00739516 0.00985591 0.99992408 -4.53011907 
    8904 Axis 0.70538554 -0.52560712 0.47557166 
    8905 Axis point 0.00000000 439.74884406 42.28488422 
    8906 Rotation angle (degrees) 0.80257623 
    8907 Shift along axis -0.41887207 
    8908  
    8909 Fit map MultiPostProcessor_PPout_9.mrc in map Stable_60S.mrc using 64511
    8910 points 
    8911 correlation = 0.796, correlation about mean = 0.3277, overlap = 2.82e+04 
    8912 steps = 96, shift = 1.34, angle = 0.311 degrees 
    8913  
    8914 Position of MultiPostProcessor_PPout_9.mrc (#9) relative to Stable_60S.mrc
    8915 (#50) coordinates: 
    8916 Matrix rotation and translation 
    8917 0.99998542 -0.00512424 -0.00170508 0.92464670 
    8918 0.00512514 0.99998673 0.00052400 -0.86445166 
    8919 0.00170237 -0.00053273 0.99999841 -1.27460130 
    8920 Axis -0.09737134 -0.31397800 0.94442397 
    8921 Axis point 231.71726915 160.35872034 0.00000000 
    8922 Rotation angle (degrees) 0.31090356 
    8923 Shift along axis -1.02237931 
    8924  
    8925 Fit map MultiPostProcessor_PPout_10.mrc in map Stable_60S.mrc using 59509
    8926 points 
    8927 correlation = 0.7961, correlation about mean = 0.352, overlap = 2.962e+04 
    8928 steps = 100, shift = 0.624, angle = 0.833 degrees 
    8929  
    8930 Position of MultiPostProcessor_PPout_10.mrc (#10) relative to Stable_60S.mrc
    8931 (#50) coordinates: 
    8932 Matrix rotation and translation 
    8933 0.99989435 0.01320815 0.00606920 -4.70713974 
    8934 -0.01320831 0.99991277 -0.00001366 2.88902403 
    8935 -0.00606885 -0.00006650 0.99998158 1.02994226 
    8936 Axis -0.00181751 0.41752076 -0.90866557 
    8937 Axis point 207.54686844 358.00321712 0.00000000 
    8938 Rotation angle (degrees) 0.83287245 
    8939 Shift along axis 0.27890971 
    8940  
    8941 
    8942 > hide #!2 models
    8943 
    8944 > hide #!3 models
    8945 
    8946 > hide #!4 models
    8947 
    8948 > hide #!5 models
    8949 
    8950 > hide #!6 models
    8951 
    8952 > hide #!7 models
    8953 
    8954 > hide #!9 models
    8955 
    8956 > hide #!10 models
    8957 
    8958 > show #!7 models
    8959 
    8960 > hide #!7 models
    8961 
    8962 > hide #!8 models
    8963 
    8964 > close #1
    8965 
    8966 > show #!2 models
    8967 
    8968 > hide #!2 models
    8969 
    8970 > show #!3 models
    8971 
    8972 > hide #!3 models
    8973 
    8974 > show #!4 models
    8975 
    8976 > volume #4 level 0.476
    8977 
    8978 > show #!58 models
    8979 
    8980 > volume #4 level 0.5353
    8981 
    8982 > volume #4 level 0.4356
    8983 
    8984 > hide #!4 models
    8985 
    8986 [Repeated 1 time(s)]
    8987 
    8988 > show #!5 models
    8989 
    8990 > hide #!58 models
    8991 
    8992 > show #!51 models
    8993 
    8994 > hide #!51 models
    8995 
    8996 > hide #!5 models
    8997 
    8998 > show #!6 models
    8999 
    9000 > hide #!6 models
    9001 
    9002 > show #!7 models
    9003 
    9004 > hide #!7 models
    9005 
    9006 > show #!8 models
    9007 
    9008 > hide #!8 models
    9009 
    9010 > show #!9 models
    9011 
    9012 > hide #!9 models
    9013 
    9014 > close #7
    9015 
    9016 > close #9
    9017 
    9018 > show #!10 models
    9019 
    9020 > show #!2 models
    9021 
    9022 > hide #!10 models
    9023 
    9024 > hide #!2 models
    9025 
    9026 > show #!51 models
    9027 
    9028 > show #!5 models
    9029 
    9030 > hide #!5 models
    9031 
    9032 > show #!4 models
    9033 
    9034 > hide #!4 models
    9035 
    9036 > show #!2 models
    9037 
    9038 > show #!5 models
    9039 
    9040 > hide #!5 models
    9041 
    9042 > show #!3 models
    9043 
    9044 > hide #!2 models
    9045 
    9046 > hide #!3 models
    9047 
    9048 > show #!4 models
    9049 
    9050 > hide #!4 models
    9051 
    9052 > show #!5 models
    9053 
    9054 > hide #!5 models
    9055 
    9056 > show #!6 models
    9057 
    9058 > hide #!6 models
    9059 
    9060 > show #!8 models
    9061 
    9062 > hide #!8 models
    9063 
    9064 > show #!50 models
    9065 
    9066 > hide #!50 models
    9067 
    9068 > show #!10 models
    9069 
    9070 > hide #!10 models
    9071 
    9072 > show #!8 models
    9073 
    9074 > hide #!8 models
    9075 
    9076 > show #!52 models
    9077 
    9078 > hide #!51 models
    9079 
    9080 > hide #!52 models
    9081 
    9082 > show #!53 models
    9083 
    9084 > hide #!53 models
    9085 
    9086 > show #!58 models
    9087 
    9088 > show #!59 models
    9089 
    9090 > hide #!58 models
    9091 
    9092 > show #!58 models
    9093 
    9094 > hide #!59 models
    9095 
    9096 > show #!59 models
    9097 
    9098 > hide #!58 models
    9099 
    9100 > hide #!59 models
    9101 
    9102 > show #!60 models
    9103 
    9104 > show #!61 models
    9105 
    9106 > hide #!60 models
    9107 
    9108 > hide #!61 models
    9109 
    9110 > show #!2 models
    9111 
    9112 > show #!58 models
    9113 
    9114 > hide #!58 models
    9115 
    9116 > show #!59 models
    9117 
    9118 > hide #!59 models
    9119 
    9120 > show #!53 models
    9121 
    9122 > show #!52 models
    9123 
    9124 > hide #!53 models
    9125 
    9126 > hide #!2 models
    9127 
    9128 > show #!2 models
    9129 
    9130 > show #!59 models
    9131 
    9132 > hide #!59 models
    9133 
    9134 > show #!59 models
    9135 
    9136 > hide #!59 models
    9137 
    9138 > show #!51 models
    9139 
    9140 > hide #!2 models
    9141 
    9142 > hide #!52 models
    9143 
    9144 > show #!52 models
    9145 
    9146 > hide #!51 models
    9147 
    9148 > hide #!52 models
    9149 
    9150 > show #!52 models
    9151 
    9152 > show #!50 models
    9153 
    9154 > hide #!50 models
    9155 
    9156 > show #!51 models
    9157 
    9158 > hide #!52 models
    9159 
    9160 > select add #51/w3:148
    9161 
    9162 7 atoms, 6 bonds, 1 residue, 1 model selected 
    9163 
    9164 > select add #51/51:4034
    9165 
    9166 30 atoms, 31 bonds, 2 residues, 1 model selected 
    9167 
    9168 > select up
    9169 
    9170 77872 atoms, 87115 bonds, 3641 residues, 1 model selected 
    9171 
    9172 > select up
    9173 
    9174 79568 atoms, 88840 bonds, 3852 residues, 1 model selected 
    9175 
    9176 > show #!52 models
    9177 
    9178 > select add #52
    9179 
    9180 300502 atoms, 325792 bonds, 5887 pseudobonds, 22038 residues, 5 models
    9181 selected 
    9182 
    9183 > select subtract #52
    9184 
    9185 79568 atoms, 88840 bonds, 3852 residues, 1 model selected 
    9186 
    9187 > hide #!51 models
    9188 
    9189 > hide #!52 models
    9190 
    9191 > show #!52 models
    9192 
    9193 > select #52/2:46
    9194 
    9195 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9196 
    9197 > select up
    9198 
    9199 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    9200 
    9201 > select up
    9202 
    9203 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    9204 
    9205 > select down
    9206 
    9207 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    9208 
    9209 > select #52/ii:14
    9210 
    9211 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9212 
    9213 > select up
    9214 
    9215 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    9216 
    9217 > select up
    9218 
    9219 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    9220 
    9221 > color sel red
    9222 
    9223 > undo
    9224 
    9225 > select clear
    9226 
    9227 > select #52/ii:46
    9228 
    9229 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9230 
    9231 > select up
    9232 
    9233 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    9234 
    9235 > color sel red
    9236 
    9237 > select #52/2:15
    9238 
    9239 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9240 
    9241 > select up
    9242 
    9243 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    9244 
    9245 > color sel orange
    9246 
    9247 > select #52/3:62
    9248 
    9249 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9250 
    9251 > select up
    9252 
    9253 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    9254 
    9255 > color sel yellow
    9256 
    9257 > color sel lime
    9258 
    9259 > show #!51 models
    9260 
    9261 > hide #!52 models
    9262 
    9263 > show #!52 models
    9264 
    9265 > hide #!52 models
    9266 
    9267 > log metadata #52
    9268 
    9269 No models had metadata
    9270 
    9271 > log chains #52
    9272 
    9273 Chain information for 5lzs #52 
    9274 --- 
    9275 Chain | Description | UniProt 
    9276 2 ii | tRNA |   
    9277 3 | E-site tRNA |   
    9278 5 | 28S ribosomal RNA |   
    9279 7 | 5S ribosomal RNA |   
    9280 8 | 5.8S ribosomal RNA |   
    9281 9 | 18S ribosomal RNA |   
    9282 A | uL2 | G1TT27_RABIT 1-257 
    9283 AA | uS2 |   
    9284 B | uL3 | G1TL06_RABIT 2-403 
    9285 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    9286 C | uL4 | G1SVW5_RABIT 1-378 
    9287 CC | uS5 |   
    9288 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    9289 DD | uS4 | G1TNM3_RABIT 1-243 
    9290 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    9291 EE | 40S ribosomal protein S4 |   
    9292 F | uL30 | G1TUB1_RABIT 1-247 
    9293 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    9294 G | eL8 | G1STW0_RABIT 78-319 
    9295 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    9296 H | uL6 | G1TX33_RABIT 1-192 
    9297 HH | uS7 | G1SVB0_RABIT 1-194 
    9298 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    9299 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    9300 J | uL5 | G1TUB8_RABIT 1-178 
    9301 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    9302 KK | eS10 | G1TPV3_RABIT 1-165 
    9303 L | eL13 |   
    9304 LL | uS17 | G1TRM4_RABIT 1-158 
    9305 M | eL14 | G1SZ12_RABIT 1-218 
    9306 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    9307 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    9308 NN | uS15 | G1SP51_RABIT 1-151 
    9309 O | uL13 |   
    9310 OO | uS11 | G1T1F0_RABIT -4-151 
    9311 P | uL22 | G1TVT6_RABIT 1-184 
    9312 PP | uS19 | G1U0Q2_RABIT 1-145 
    9313 Q | eL18 |   
    9314 QQ | uS9 | G1SGX4_RABIT 1-146 
    9315 R | eL19 |   
    9316 RR | eS17 | G1TU13_RABIT 1-135 
    9317 S | eL20 |   
    9318 SS | uS13 | G1TPG3_RABIT 1-152 
    9319 T | eL21 | G1SHQ2_RABIT 1-160 
    9320 TT | eS19 | G1TN62_RABIT 1-145 
    9321 U | eL22 |   
    9322 UU | uS10 | G1SIZ2_RABIT 1-119 
    9323 V | uL14 | G1T6D1_RABIT 1-140 
    9324 VV | eS21 |   
    9325 W | uL24 | G1SE28_RABIT 1-157 
    9326 WW | uS8 | G1TG89_RABIT 1-130 
    9327 X | uL23 | G1SE76_RABIT 1-156 
    9328 XX | uS12 |   
    9329 Y | uL24 | G1SQH0_RABIT 1-145 
    9330 YY | eS24 |   
    9331 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    9332 ZZ | eS25 | G1TDB3_RABIT 1-125 
    9333 a | uL15 | G1SNY0_RABIT 1-148 
    9334 aa | eS26 |   
    9335 b | eL29 | G1SGR6_RABIT 1-226 
    9336 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    9337 c | eL30 | G1TDL2_RABIT 1-115 
    9338 cc | eS28 | G1TIB4_RABIT 1-69 
    9339 d | eL31 | G1SHG0_RABIT 1-125 
    9340 dd | uS14 | G1U7M4_RABIT 1-56 
    9341 e | eL32 | G1U437_RABIT 1-135 
    9342 ee | eS30 | G1T8A2_RABIT 0-132 
    9343 f | eL33 | G1SF08_RABIT 1-110 
    9344 ff | eS31 | G1SK22_RABIT 1-156 
    9345 g | eL34 | G1U945_RABIT 1-116 
    9346 gg | RACK1 | G1SJB4_RABIT 1-317 
    9347 h | uL29 | G1SIT5_RABIT 1-123 
    9348 hh | mRNA |   
    9349 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    9350 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    9351 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    9352 k | eL38 |   
    9353 l | eL39 | G1TTN1_RABIT 1-51 
    9354 m | eL40 |   
    9355 n | 60s ribosomal protein l41 |   
    9356 o | eL42 | G1U344_RABIT 1-106 
    9357 p | eL43 | G1SY53_RABIT 1-92 
    9358 r | eL28 | G1U7L1_RABIT 1-137 
    9359 s | uL10 |   
    9360 t | uL11 | G1SMR7_RABIT 1-165 
    9361  
    9362 
    9363 > log metadata #52
    9364 
    9365 No models had metadata
    9366 
    9367 > log chains #52
    9368 
    9369 Chain information for 5lzs #52 
    9370 --- 
    9371 Chain | Description | UniProt 
    9372 2 ii | tRNA |   
    9373 3 | E-site tRNA |   
    9374 5 | 28S ribosomal RNA |   
    9375 7 | 5S ribosomal RNA |   
    9376 8 | 5.8S ribosomal RNA |   
    9377 9 | 18S ribosomal RNA |   
    9378 A | uL2 | G1TT27_RABIT 1-257 
    9379 AA | uS2 |   
    9380 B | uL3 | G1TL06_RABIT 2-403 
    9381 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    9382 C | uL4 | G1SVW5_RABIT 1-378 
    9383 CC | uS5 |   
    9384 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    9385 DD | uS4 | G1TNM3_RABIT 1-243 
    9386 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    9387 EE | 40S ribosomal protein S4 |   
    9388 F | uL30 | G1TUB1_RABIT 1-247 
    9389 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    9390 G | eL8 | G1STW0_RABIT 78-319 
    9391 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    9392 H | uL6 | G1TX33_RABIT 1-192 
    9393 HH | uS7 | G1SVB0_RABIT 1-194 
    9394 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    9395 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    9396 J | uL5 | G1TUB8_RABIT 1-178 
    9397 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    9398 KK | eS10 | G1TPV3_RABIT 1-165 
    9399 L | eL13 |   
    9400 LL | uS17 | G1TRM4_RABIT 1-158 
    9401 M | eL14 | G1SZ12_RABIT 1-218 
    9402 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    9403 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    9404 NN | uS15 | G1SP51_RABIT 1-151 
    9405 O | uL13 |   
    9406 OO | uS11 | G1T1F0_RABIT -4-151 
    9407 P | uL22 | G1TVT6_RABIT 1-184 
    9408 PP | uS19 | G1U0Q2_RABIT 1-145 
    9409 Q | eL18 |   
    9410 QQ | uS9 | G1SGX4_RABIT 1-146 
    9411 R | eL19 |   
    9412 RR | eS17 | G1TU13_RABIT 1-135 
    9413 S | eL20 |   
    9414 SS | uS13 | G1TPG3_RABIT 1-152 
    9415 T | eL21 | G1SHQ2_RABIT 1-160 
    9416 TT | eS19 | G1TN62_RABIT 1-145 
    9417 U | eL22 |   
    9418 UU | uS10 | G1SIZ2_RABIT 1-119 
    9419 V | uL14 | G1T6D1_RABIT 1-140 
    9420 VV | eS21 |   
    9421 W | uL24 | G1SE28_RABIT 1-157 
    9422 WW | uS8 | G1TG89_RABIT 1-130 
    9423 X | uL23 | G1SE76_RABIT 1-156 
    9424 XX | uS12 |   
    9425 Y | uL24 | G1SQH0_RABIT 1-145 
    9426 YY | eS24 |   
    9427 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    9428 ZZ | eS25 | G1TDB3_RABIT 1-125 
    9429 a | uL15 | G1SNY0_RABIT 1-148 
    9430 aa | eS26 |   
    9431 b | eL29 | G1SGR6_RABIT 1-226 
    9432 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    9433 c | eL30 | G1TDL2_RABIT 1-115 
    9434 cc | eS28 | G1TIB4_RABIT 1-69 
    9435 d | eL31 | G1SHG0_RABIT 1-125 
    9436 dd | uS14 | G1U7M4_RABIT 1-56 
    9437 e | eL32 | G1U437_RABIT 1-135 
    9438 ee | eS30 | G1T8A2_RABIT 0-132 
    9439 f | eL33 | G1SF08_RABIT 1-110 
    9440 ff | eS31 | G1SK22_RABIT 1-156 
    9441 g | eL34 | G1U945_RABIT 1-116 
    9442 gg | RACK1 | G1SJB4_RABIT 1-317 
    9443 h | uL29 | G1SIT5_RABIT 1-123 
    9444 hh | mRNA |   
    9445 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    9446 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    9447 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    9448 k | eL38 |   
    9449 l | eL39 | G1TTN1_RABIT 1-51 
    9450 m | eL40 |   
    9451 n | 60s ribosomal protein l41 |   
    9452 o | eL42 | G1U344_RABIT 1-106 
    9453 p | eL43 | G1SY53_RABIT 1-92 
    9454 r | eL28 | G1U7L1_RABIT 1-137 
    9455 s | uL10 |   
    9456 t | uL11 | G1SMR7_RABIT 1-165 
    9457  
    9458 
    9459 > show #!52 target m
    9460 
    9461 > hide #!52 target m
    9462 
    9463 > show #!52 target m
    9464 
    9465 > hide #!52 models
    9466 
    9467 > hide #!51 models
    9468 
    9469 > select add #52
    9470 
    9471 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    9472 selected 
    9473 
    9474 > select subtract #52
    9475 
    9476 Nothing selected 
    9477 
    9478 > show #!51 models
    9479 
    9480 > log metadata #51
    9481 
    9482 No models had metadata
    9483 
    9484 > log chains #51
    9485 
    9486 Chain information for 6hcj #51 
    9487 --- 
    9488 Chain | Description | UniProt 
    9489 1 | nascent chain |   
    9490 33 | P/E tRNA |   
    9491 51 | 28S ribosomal RNA |   
    9492 71 | 5S ribosomal RNA |   
    9493 81 | 5.8S ribosomal RNA |   
    9494 A2 | 18S ribosomal RNA |   
    9495 A3 | Ribosomal protein L8 | G1TT27_RABIT 1-257 
    9496 B2 | uS2 |   
    9497 B3 | uL3 | G1TL06_RABIT 2-403 
    9498 C2 | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    9499 C3 | uL4 |   
    9500 D2 | uS5 |   
    9501 D3 | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    9502 E2 | uS3 | G1TNM3_RABIT 1-243 
    9503 E3 | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    9504 F2 | eS4 |   
    9505 F3 | uL30 | G1TUB1_RABIT 1-247 
    9506 G2 | Ribosomal protein S5 | G1TFM5_RABIT 1-204 
    9507 G3 | eL8 |   
    9508 H2 | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    9509 H3 | uL6 | G1TX33_RABIT 1-192 
    9510 I2 | 40S ribosomal protein S7 | G1SVB0_RABIT 1-194 
    9511 I3 | 60S ribosomal protein L10 | B7NZQ2_RABIT 1-214 
    9512 J2 | eS8 |   
    9513 J3 | Ribosomal protein L11 | G1TUB8_RABIT 1-178 
    9514 K2 | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    9515 L2 | eS10 | G1TPV3_RABIT 1-165 
    9516 L3 | eL13 |   
    9517 M2 | Ribosomal protein S11 | G1TRM4_RABIT 1-158 
    9518 M3 | Ribosomal protein L14 | G1SZ12_RABIT 1-218 
    9519 N2 | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    9520 N3 | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    9521 O2 | uS15 | G1SP51_RABIT 1-151 
    9522 O3 | uL13 |   
    9523 P2 | uS11 |   
    9524 P3 | uL22 | G1TVT6_RABIT 1-184 
    9525 Q2 | uS19 | G1U0Q2_RABIT 1-145 
    9526 Q3 | eL18 |   
    9527 R2 | Ribosomal protein S16 | G1SGX4_RABIT 1-146 
    9528 R3 | eL19 |   
    9529 S2 | eS17 | G1TU13_RABIT 1-135 
    9530 S3 | eL20 |   
    9531 T2 | uS13 | G1TPG3_RABIT 1-152 
    9532 T3 | eL21 | G1SHQ2_RABIT 1-160 
    9533 U2 | eS19 |   
    9534 U3 | eL22 |   
    9535 V2 | uS10 | G1SIZ2_RABIT 1-119 
    9536 V3 | Ribosomal protein L23 | G1T6D1_RABIT 1-140 
    9537 W2 | eS21 |   
    9538 X2 | Ribosomal protein S15a | G1TG89_RABIT 1-130 
    9539 X3 | uL23 | G1SE76_RABIT 1-156 
    9540 Y2 | uS12 |   
    9541 Y3 | Ribosomal protein L26 | G1SQH0_RABIT 1-145 
    9542 Z2 | eS24 |   
    9543 Z3 | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    9544 a2 | eS25 | G1TDB3_RABIT 1-125 
    9545 a3 | uL15 | G1SNY0_RABIT 2-148 
    9546 b2 | eS26 |   
    9547 b3 | eL29 | G1SGR6_RABIT 1-226 
    9548 c2 | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    9549 c3 | eL30 | G1TDL2_RABIT 1-115 
    9550 d2 | Ribosomal protein S28 | G1TIB4_RABIT 1-69 
    9551 d3 | eL31 | G1SHG0_RABIT 1-125 
    9552 e2 | uS14 | G1U7M4_RABIT 1-56 
    9553 e3 | eL32 | G1U437_RABIT 1-135 
    9554 f2 | 40S ribosomal protein S30 | G1T8A2_RABIT 0-132 
    9555 f3 | eL33 | G1SF08_RABIT 1-110 
    9556 g2 | Ribosomal protein S27a | G1SK22_RABIT 1-156 
    9557 g3 | eL34 |   
    9558 h2 | RACK1 | G1SJB4_RABIT 1-317 
    9559 h3 | uL29 | G1SIT5_RABIT 1-123 
    9560 i3 | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    9561 j3 | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    9562 k3 | eL38 |   
    9563 l3 | eL39 | G1TTN1_RABIT 1-51 
    9564 m3 | eL40 |   
    9565 n3 | eL41 |   
    9566 o3 | eL42 |   
    9567 p3 | eL43 | G1SY53_RABIT 1-92 
    9568 q3 | A/P RNA |   
    9569 r3 | eL28 | G1U7L1_RABIT 1-137 
    9570 t3 | uL10 |   
    9571 u3 | Ribosomal protein L12 | G1SMR7_RABIT 1-165 
    9572 v3 | mRNA |   
    9573 w3 | uL1 | G1SKZ8_RABIT 1-217 
    9574  
    9575 
    9576 > log metadata #51
    9577 
    9578 No models had metadata
    9579 
    9580 > log chains #51
    9581 
    9582 Chain information for 6hcj #51 
    9583 --- 
    9584 Chain | Description | UniProt 
    9585 1 | nascent chain |   
    9586 33 | P/E tRNA |   
    9587 51 | 28S ribosomal RNA |   
    9588 71 | 5S ribosomal RNA |   
    9589 81 | 5.8S ribosomal RNA |   
    9590 A2 | 18S ribosomal RNA |   
    9591 A3 | Ribosomal protein L8 | G1TT27_RABIT 1-257 
    9592 B2 | uS2 |   
    9593 B3 | uL3 | G1TL06_RABIT 2-403 
    9594 C2 | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    9595 C3 | uL4 |   
    9596 D2 | uS5 |   
    9597 D3 | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    9598 E2 | uS3 | G1TNM3_RABIT 1-243 
    9599 E3 | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    9600 F2 | eS4 |   
    9601 F3 | uL30 | G1TUB1_RABIT 1-247 
    9602 G2 | Ribosomal protein S5 | G1TFM5_RABIT 1-204 
    9603 G3 | eL8 |   
    9604 H2 | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    9605 H3 | uL6 | G1TX33_RABIT 1-192 
    9606 I2 | 40S ribosomal protein S7 | G1SVB0_RABIT 1-194 
    9607 I3 | 60S ribosomal protein L10 | B7NZQ2_RABIT 1-214 
    9608 J2 | eS8 |   
    9609 J3 | Ribosomal protein L11 | G1TUB8_RABIT 1-178 
    9610 K2 | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    9611 L2 | eS10 | G1TPV3_RABIT 1-165 
    9612 L3 | eL13 |   
    9613 M2 | Ribosomal protein S11 | G1TRM4_RABIT 1-158 
    9614 M3 | Ribosomal protein L14 | G1SZ12_RABIT 1-218 
    9615 N2 | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    9616 N3 | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    9617 O2 | uS15 | G1SP51_RABIT 1-151 
    9618 O3 | uL13 |   
    9619 P2 | uS11 |   
    9620 P3 | uL22 | G1TVT6_RABIT 1-184 
    9621 Q2 | uS19 | G1U0Q2_RABIT 1-145 
    9622 Q3 | eL18 |   
    9623 R2 | Ribosomal protein S16 | G1SGX4_RABIT 1-146 
    9624 R3 | eL19 |   
    9625 S2 | eS17 | G1TU13_RABIT 1-135 
    9626 S3 | eL20 |   
    9627 T2 | uS13 | G1TPG3_RABIT 1-152 
    9628 T3 | eL21 | G1SHQ2_RABIT 1-160 
    9629 U2 | eS19 |   
    9630 U3 | eL22 |   
    9631 V2 | uS10 | G1SIZ2_RABIT 1-119 
    9632 V3 | Ribosomal protein L23 | G1T6D1_RABIT 1-140 
    9633 W2 | eS21 |   
    9634 X2 | Ribosomal protein S15a | G1TG89_RABIT 1-130 
    9635 X3 | uL23 | G1SE76_RABIT 1-156 
    9636 Y2 | uS12 |   
    9637 Y3 | Ribosomal protein L26 | G1SQH0_RABIT 1-145 
    9638 Z2 | eS24 |   
    9639 Z3 | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    9640 a2 | eS25 | G1TDB3_RABIT 1-125 
    9641 a3 | uL15 | G1SNY0_RABIT 2-148 
    9642 b2 | eS26 |   
    9643 b3 | eL29 | G1SGR6_RABIT 1-226 
    9644 c2 | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    9645 c3 | eL30 | G1TDL2_RABIT 1-115 
    9646 d2 | Ribosomal protein S28 | G1TIB4_RABIT 1-69 
    9647 d3 | eL31 | G1SHG0_RABIT 1-125 
    9648 e2 | uS14 | G1U7M4_RABIT 1-56 
    9649 e3 | eL32 | G1U437_RABIT 1-135 
    9650 f2 | 40S ribosomal protein S30 | G1T8A2_RABIT 0-132 
    9651 f3 | eL33 | G1SF08_RABIT 1-110 
    9652 g2 | Ribosomal protein S27a | G1SK22_RABIT 1-156 
    9653 g3 | eL34 |   
    9654 h2 | RACK1 | G1SJB4_RABIT 1-317 
    9655 h3 | uL29 | G1SIT5_RABIT 1-123 
    9656 i3 | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    9657 j3 | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    9658 k3 | eL38 |   
    9659 l3 | eL39 | G1TTN1_RABIT 1-51 
    9660 m3 | eL40 |   
    9661 n3 | eL41 |   
    9662 o3 | eL42 |   
    9663 p3 | eL43 | G1SY53_RABIT 1-92 
    9664 q3 | A/P RNA |   
    9665 r3 | eL28 | G1U7L1_RABIT 1-137 
    9666 t3 | uL10 |   
    9667 u3 | Ribosomal protein L12 | G1SMR7_RABIT 1-165 
    9668 v3 | mRNA |   
    9669 w3 | uL1 | G1SKZ8_RABIT 1-217 
    9670  
    9671 
    9672 > select #51/q3:46
    9673 
    9674 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9675 
    9676 > select up
    9677 
    9678 1579 atoms, 1765 bonds, 74 residues, 1 model selected 
    9679 
    9680 > color sel orange red
    9681 
    9682 > select #51/33:44
    9683 
    9684 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9685 
    9686 > select up
    9687 
    9688 1604 atoms, 1795 bonds, 75 residues, 1 model selected 
    9689 
    9690 > color sel yellow
    9691 
    9692 > select clear
    9693 
    9694 Drag select of 18 residues 
    9695 
    9696 > hide #!51 models
    9697 
    9698 > show #!52 models
    9699 
    9700 > show #!51 models
    9701 
    9702 > hide #!51 models
    9703 
    9704 > hide #!52 models
    9705 
    9706 > select clear
    9707 
    9708 > show #!53 models
    9709 
    9710 > select #53/m:21
    9711 
    9712 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9713 
    9714 > select down
    9715 
    9716 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9717 
    9718 > select up
    9719 
    9720 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    9721 
    9722 > select up
    9723 
    9724 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    9725 
    9726 > select down
    9727 
    9728 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    9729 
    9730 > select down
    9731 
    9732 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9733 
    9734 > select up
    9735 
    9736 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    9737 
    9738 > color sel red
    9739 
    9740 > hide #!53 models
    9741 
    9742 > show #!58 models
    9743 
    9744 > select #58/PT:51
    9745 
    9746 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9747 
    9748 > select up
    9749 
    9750 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    9751 
    9752 > color sel yellow
    9753 
    9754 > show #!51 models
    9755 
    9756 > hide #!51 models
    9757 
    9758 > show #!51 models
    9759 
    9760 > show #!52 models
    9761 
    9762 > hide #!51 models
    9763 
    9764 > color sel orange
    9765 
    9766 > show #!53 models
    9767 
    9768 > hide #!53 models
    9769 
    9770 > show #!53 models
    9771 
    9772 > hide #!58 models
    9773 
    9774 > hide #!53 models
    9775 
    9776 > hide #!52 models
    9777 
    9778 > show #!59 models
    9779 
    9780 > show #!60 models
    9781 
    9782 > hide #!59 models
    9783 
    9784 > hide #!60 models
    9785 
    9786 > show #!61 models
    9787 
    9788 > hide #!61 models
    9789 
    9790 > show #!51 models
    9791 
    9792 > show #!52 models
    9793 
    9794 > show #!53 models
    9795 
    9796 > show #!61 models
    9797 
    9798 > hide #!61 models
    9799 
    9800 > show #!58 models
    9801 
    9802 > hide #!58 models
    9803 
    9804 > show #!58 models
    9805 
    9806 > hide #!58 models
    9807 
    9808 > show #!58 models
    9809 
    9810 > hide #!58 models
    9811 
    9812 > select #51/q3:14
    9813 
    9814 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9815 
    9816 > select up
    9817 
    9818 1579 atoms, 1765 bonds, 74 residues, 1 model selected 
    9819 
    9820 > color sel orange
    9821 
    9822 > hide #!51 models
    9823 
    9824 > hide #!52 models
    9825 
    9826 > show #!52 models
    9827 
    9828 > hide #!53 models
    9829 
    9830 > show #!58 models
    9831 
    9832 > select add #52/2:46
    9833 
    9834 1602 atoms, 1790 bonds, 75 residues, 2 models selected 
    9835 
    9836 > select #58/PT:47
    9837 
    9838 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9839 
    9840 > select add #52/2:46
    9841 
    9842 46 atoms, 50 bonds, 2 residues, 2 models selected 
    9843 
    9844 > select up
    9845 
    9846 3260 atoms, 3642 bonds, 153 residues, 2 models selected 
    9847 
    9848 > color sel light sea green
    9849 
    9850 > color sel magenta
    9851 
    9852 > color sel gray
    9853 
    9854 > color sel yellow
    9855 
    9856 > show #!53 models
    9857 
    9858 > hide #!53 models
    9859 
    9860 > show #!51 models
    9861 
    9862 > hide #!51 models
    9863 
    9864 > show #!51 models
    9865 
    9866 > select add #51/33:50
    9867 
    9868 3280 atoms, 3663 bonds, 154 residues, 3 models selected 
    9869 
    9870 > select #51/33:49
    9871 
    9872 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9873 
    9874 > select up
    9875 
    9876 1604 atoms, 1795 bonds, 75 residues, 1 model selected 
    9877 
    9878 > color sel cyan
    9879 
    9880 > color sel light sea green
    9881 
    9882 > color sel lime
    9883 
    9884 > show #!53 models
    9885 
    9886 > show #!59 models
    9887 
    9888 > show #!60 models
    9889 
    9890 > show #!61 models
    9891 
    9892 > hide #!52 models
    9893 
    9894 > hide #!53 models
    9895 
    9896 > hide #!58 models
    9897 
    9898 > hide #!59 models
    9899 
    9900 > hide #!61 models
    9901 
    9902 > show #!52 models
    9903 
    9904 > hide #!51 models
    9905 
    9906 > hide #!52 models
    9907 
    9908 > select clear
    9909 
    9910 > show #!52 models
    9911 
    9912 > show #!53 models
    9913 
    9914 > hide #!53 models
    9915 
    9916 > hide #!52 models
    9917 
    9918 > show #!59 models
    9919 
    9920 > hide #!59 models
    9921 
    9922 > show #!58 models
    9923 
    9924 > hide #!58 models
    9925 
    9926 > show #!53 models
    9927 
    9928 > hide #!53 models
    9929 
    9930 > show #!52 models
    9931 
    9932 > show #!51 models
    9933 
    9934 > hide #!52 models
    9935 
    9936 > hide #!51 models
    9937 
    9938 > show #!51 models
    9939 
    9940 > hide #!51 models
    9941 
    9942 > show #!58 models
    9943 
    9944 > show #!59 models
    9945 
    9946 > hide #!60 models
    9947 
    9948 > show #!61 models
    9949 
    9950 > hide #!59 models
    9951 
    9952 > hide #!58 models
    9953 
    9954 > select #61/18S:1549
    9955 
    9956 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9957 
    9958 > hide #!61 models
    9959 
    9960 > show #!59 models
    9961 
    9962 > select #59/1S:1550
    9963 
    9964 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9965 
    9966 > hide #!59 models
    9967 
    9968 > show #!58 models
    9969 
    9970 > select #58/1S:1562
    9971 
    9972 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9973 
    9974 > hide #!58 models
    9975 
    9976 > show #!53 models
    9977 
    9978 > hide #!53 models
    9979 
    9980 > show #!52 models
    9981 
    9982 > show #!61 models
    9983 
    9984 > select #52/9:1613
    9985 
    9986 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9987 
    9988 > hide #!52 models
    9989 
    9990 > select #61/18S:1208
    9991 
    9992 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9993 
    9994 > hide #!61 models
    9995 
    9996 > show #!59 models
    9997 
    9998 > select add #59/1S:1237
    9999 
    10000 45 atoms, 49 bonds, 2 residues, 2 models selected 
    10001 
    10002 > hide #!59 models
    10003 
    10004 > show #!58 models
    10005 
    10006 > select add #58/15:32
    10007 
    10008 53 atoms, 56 bonds, 3 residues, 3 models selected 
    10009 
    10010 > hide #!58 models
    10011 
    10012 > show #!53 models
    10013 
    10014 > hide #!53 models
    10015 
    10016 > show #!52 models
    10017 
    10018 > select add #52/9:1614
    10019 
    10020 75 atoms, 80 bonds, 4 residues, 4 models selected 
    10021 
    10022 > hide #!52 models
    10023 
    10024 > show #!51 models
    10025 
    10026 > select add #51/A2:1618
    10027 
    10028 95 atoms, 101 bonds, 5 residues, 5 models selected 
    10029 
    10030 > select up
    10031 
    10032 148307 atoms, 165843 bonds, 6959 residues, 5 models selected 
    10033 
    10034 > select up
    10035 
    10036 149228 atoms, 166785 bonds, 7074 residues, 5 models selected 
    10037 
    10038 > select up
    10039 
    10040 149495 atoms, 166785 bonds, 7341 residues, 5 models selected 
    10041 
    10042 > select up
    10043 
    10044 1064570 atoms, 1142269 bonds, 87881 residues, 5 models selected 
    10045 
    10046 > select down
    10047 
    10048 149495 atoms, 166785 bonds, 7341 residues, 5 models selected 
    10049 
    10050 > select up
    10051 
    10052 1064570 atoms, 1142269 bonds, 87881 residues, 5 models selected 
    10053 
    10054 > select down
    10055 
    10056 149495 atoms, 166785 bonds, 7341 residues, 5 models selected 
    10057 
    10058 > select ssu
    10059 
    10060 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    10061 selected 
    10062 
    10063 > show #!58 models
    10064 
    10065 > hide #!58 models
    10066 
    10067 > hide #!51 models
    10068 
    10069 > show #!51 models
    10070 
    10071 > hide #!51 models
    10072 
    10073 > show #!51 models
    10074 
    10075 > show #!52 models
    10076 
    10077 > hide #!52 models
    10078 
    10079 > hide #!51 models
    10080 
    10081 > show #!52 models
    10082 
    10083 > show #!51 models
    10084 
    10085 > hide #!52 models
    10086 
    10087 > hide #!51 models
    10088 
    10089 > show #!60 models
    10090 
    10091 > color (#!60 & sel) dark gray
    10092 
    10093 > show #!59 models
    10094 
    10095 > hide #!60 models
    10096 
    10097 > show #!60 models
    10098 
    10099 > hide #!59 models
    10100 
    10101 > show #!59 models
    10102 
    10103 > show #!61 models
    10104 
    10105 > show #!58 models
    10106 
    10107 > color (#!58-61 & sel) black
    10108 
    10109 > hide #!60 models
    10110 
    10111 > select add #60
    10112 
    10113 465371 atoms, 502150 bonds, 12484 pseudobonds, 36459 residues, 14 models
    10114 selected 
    10115 
    10116 > select subtract #60
    10117 
    10118 257320 atoms, 279588 bonds, 7349 pseudobonds, 18591 residues, 10 models
    10119 selected 
    10120 
    10121 > select down
    10122 
    10123 262618 atoms, 285926 bonds, 7349 pseudobonds, 18427 residues, 12 models
    10124 selected 
    10125 
    10126 > select clear
    10127 
    10128 > select ssu
    10129 
    10130 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    10131 selected 
    10132 
    10133 > select add #60
    10134 
    10135 465371 atoms, 502150 bonds, 12484 pseudobonds, 36459 residues, 14 models
    10136 selected 
    10137 
    10138 > select subtract #60
    10139 
    10140 257320 atoms, 279588 bonds, 7349 pseudobonds, 18591 residues, 10 models
    10141 selected 
    10142 
    10143 > hide #!61 models
    10144 
    10145 > show #!61 models
    10146 
    10147 > hide #!59 models
    10148 
    10149 > hide #!61 models
    10150 
    10151 > hide #!58 models
    10152 
    10153 > show #!59 models
    10154 
    10155 > hide #!59 models
    10156 
    10157 > show #!61 models
    10158 
    10159 > hide #!61 models
    10160 
    10161 > show #!59 models
    10162 
    10163 > show #!58 models
    10164 
    10165 > color (#!58-59 & sel) dim gray
    10166 
    10167 > show #!61 models
    10168 
    10169 > hide #!61 models
    10170 
    10171 > select add #61
    10172 
    10173 359396 atoms, 384312 bonds, 7876 pseudobonds, 30861 residues, 10 models
    10174 selected 
    10175 
    10176 > select subtract #61
    10177 
    10178 152330 atoms, 162598 bonds, 2807 pseudobonds, 13258 residues, 6 models
    10179 selected 
    10180 
    10181 > select ~sel & ##selected
    10182 
    10183 264557 atoms, 285228 bonds, 6134 pseudobonds, 20888 residues, 6 models
    10184 selected 
    10185 
    10186 > select subtract #58/PT
    10187 
    10188 262913 atoms, 283392 bonds, 6053 pseudobonds, 20811 residues, 6 models
    10189 selected 
    10190 
    10191 > color (#!58-59 & sel) light sea green
    10192 
    10193 > hide #!58 models
    10194 
    10195 > hide #!59 models
    10196 
    10197 > select clear
    10198 
    10199 > show #!51 models
    10200 
    10201 > show #!52 models
    10202 
    10203 > hide #!52 models
    10204 
    10205 > show #!58 models
    10206 
    10207 > hide #!51 models
    10208 
    10209 > rename #58 "Unrotated, P"
    10210 
    10211 > hide #!58 models
    10212 
    10213 > show #!59 models
    10214 
    10215 > rename #58 "Unrotated base, P"
    10216 
    10217 > rename #59 "Rotated base"
    10218 
    10219 > show #!53 models
    10220 
    10221 > hide #!59 models
    10222 
    10223 > show #!58 models
    10224 
    10225 > hide #!58 models
    10226 
    10227 > select #53/BT:179
    10228 
    10229 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10230 
    10231 > select up
    10232 
    10233 95 atoms, 94 bonds, 19 residues, 1 model selected 
    10234 
    10235 > select up
    10236 
    10237 1050 atoms, 1049 bonds, 210 residues, 1 model selected 
    10238 
    10239 > color sel light sea green
    10240 
    10241 > rename #53 A
    10242 
    10243 > show #!58 models
    10244 
    10245 > hide #!58 models
    10246 
    10247 > rename #53 "A, IF5 and L-contact"
    10248 
    10249 > hide #!53 models
    10250 
    10251 > show #!52 models
    10252 
    10253 > rename #52 "EF1, A/T, P, E"
    10254 
    10255 > hide #!52 models
    10256 
    10257 > show #!51 models
    10258 
    10259 > show #!59 models
    10260 
    10261 > rename #51 "A/P, P/E"
    10262 
    10263 > show #!60 models
    10264 
    10265 > hide #!59 models
    10266 
    10267 > hide #!51 models
    10268 
    10269 > hide #!60 models
    10270 
    10271 > show #!61 models
    10272 
    10273 > select ssu
    10274 
    10275 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    10276 selected 
    10277 
    10278 > select clear
    10279 
    10280 > log metadata #61
    10281 
    10282 No models had metadata
    10283 
    10284 > log chains #61
    10285 
    10286 Chain information for 7osm #61 
    10287 --- 
    10288 Chain | Description | UniProt 
    10289 18S | 18S rRNA |   
    10290 25S | 25S rRNA |   
    10291 58S | 5.8S rRNA |   
    10292 AB | 5S rRNA |   
    10293 ASIT | PHE tRNA |   
    10294 PSIT | FMET tRNA |   
    10295 RACK | BJ4_G0022010.mRNA.1.CDS.1 | A0A6L1BKH8_YEASX 1-319 
    10296 eEF2 | Elongation factor 2 | A0A6A5Q7K2_YEASX 1-842 
    10297 eL13 | 60S ribosomal protein L13 | A0A6L1AF71_YEASX 1-199 
    10298 eL14 | 60S ribosomal protein L14-A | RL14A_YEAST 1-138 
    10299 eL15 | 60S ribosomal protein L15-A | RL15A_YEAST 1-204 
    10300 eL18 | BJ4_G0033900.mRNA.1.CDS.1 | A0A6L1A7F6_YEASX 1-186 
    10301 eL19 | 60S ribosomal protein L19-A | RL19A_YEAST 1-189 
    10302 eL20 | 60S ribosomal protein L20 | A0A6V8RR03_YEASX 1-172 
    10303 eL21 | BJ4_G0003770.mRNA.1.CDS.1 | A0A6L0YTI6_YEASX 1-160 
    10304 eL22 | 60S ribosomal protein L22-A | A0A6L0ZZW6_YEASX 1-121 
    10305 eL24 | 60S ribosomal protein L24-A | A0A6A5PY83_YEASX 1-155 
    10306 eL27 | 60S ribosomal protein L27 | A0A6L0ZQQ7_YEASX 1-136 
    10307 eL29 | 60S ribosomal protein L29 | A0A6A5PWR1_YEASX 1-59 
    10308 eL30 | BJ4_G0020000.mRNA.1.CDS.1 | A0A6L0ZM08_YEASX 1-105 
    10309 eL31 | BJ4_G0008090.mRNA.1.CDS.1 | A0A6L0YFR2_YEASX 1-113 
    10310 eL32 | HN1_G0013350.mRNA.1.CDS.1 | A0A7I9CD28_YEASX 1-130 
    10311 eL33 | BJ4_G0025510.mRNA.1.CDS.1 | A0A6L1C3H0_YEASX 1-107 
    10312 eL34 | 60S ribosomal protein L34-A | A0A6L0ZFW3_YEASX 1-121 
    10313 eL36 | 60S ribosomal protein L36-A | RL36A_YEAST 1-100 
    10314 eL37 | Ribosomal protein L37 | A0A6L1BIE7_YEASX 1-88 
    10315 eL38 | BJ4_G0032190.mRNA.1.CDS.1 | A0A6A5PUL8_YEASX 1-78 
    10316 eL39 | 60S ribosomal protein L39 | A0A6L1ASX0_YEASX 1-51 
    10317 eL40 | Ubiquitin | A0A6V8S9K0_YEASX 1-128 
    10318 eL41 | eL41 |   
    10319 eL42 | BJ4_G0001880.mRNA.1.CDS.1 | A0A6L1B5X0_YEASX 1-106 
    10320 eL43 | 60S ribosomal protein L43-A | RL43A_YEAST 1-92 
    10321 eL6 | 60S ribosomal protein L6 | A0A6L1BLT3_YEASX 1-176 
    10322 eL8 | 60S ribosomal protein L8-A | RL8A_YEAST 1-256 
    10323 eS1 | 40S ribosomal protein S1 | A0A6A5PRY4_YEASX 1-255 
    10324 eS10 | 40S ribosomal protein S10-A | A0A6L0ZM59_YEASX 1-105 
    10325 eS17 | BJ4_G0020710.mRNA.1.CDS.1 | A0A6L1BLL7_YEASX 1-136 
    10326 eS19 | 40S ribosomal protein S19-A | A0A6L1BWT3_YEASX 1-144 
    10327 eS21 | 40S ribosomal protein S21 | A0A6L1BDN3_YEASX 1-87 
    10328 eS24 | 40S ribosomal protein S24 | A0A6L1AUB6_YEASX 1-135 
    10329 eS25 | 40S ribosomal protein S25 | A0A6A5PZ18_YEASX 1-108 
    10330 eS26 | 40S ribosomal protein S26 | A0A6A5PUG0_YEASX 1-119 
    10331 eS27 | 40S ribosomal protein S27-A | RS27A_YEAST 1-82 
    10332 eS28 | eS28 | A0A6A5Q700_YEASX 1-67 
    10333 eS30 | 40S ribosomal protein S30 | A0A6L1A1E1_YEASX 1-63 
    10334 eS31 | Ubiquitin-40S ribosomal protein S31 | A0A6A5PU37_YEASX 1-152 
    10335 eS4 | 40S ribosomal protein S4 | A0A6L0Z3Q0_YEASX 1-261 
    10336 eS6 | 40S ribosomal protein S6 | A0A6L1AMY1_YEASX 1-236 
    10337 eS7 | 40S ribosomal protein S7 | A0A6L1ACT7_YEASX 1-190 
    10338 eS8 | 40S ribosomal protein S8 | A0A6A5Q1H1_YEASX 1-200 
    10339 mRNA | MRNA |   
    10340 uL10 | 60S acidic ribosomal protein P0 | A0A6A5PT43_YEASX 1-312 
    10341 uL11 | 60S ribosomal protein L12-B | A0A6A5Q275_YEASX 1-165 
    10342 uL13 | 60S ribosomal protein L16-A | A0A6L0ZD57_YEASX 1-199 
    10343 uL14 | 60S ribosomal protein L23-B | A0A6L0Z7E4_YEASX 1-137 
    10344 uL15 | 60S ribosomal protein L28 | A0A6L0ZDK5_YEASX 1-149 
    10345 uL16 | 60S ribosomal protein L10 | A0A6A5PUZ5_YEASX 1-221 
    10346 uL18 | 60S ribosomal protein L5 | A0A6A5Q0W8_YEASX 1-297 
    10347 uL2 | 60S ribosomal protein L2-B | A0A6L0Y8L2_YEASX 1-254 
    10348 uL22 | BJ4_G0005750.mRNA.1.CDS.1 | A0A6L1BCL1_YEASX 1-184 
    10349 uL23 | 60S ribosomal protein L25 | A0A6L0YSM0_YEASX 1-142 
    10350 uL24 | 60S ribosomal protein L26-A | RL26A_YEAST 1-127 
    10351 uL29 | BJ4_G0044250.mRNA.1.CDS.1 | A0A7I9BRN0_YEASX 1-120 
    10352 uL3 | 60S ribosomal protein L3 | A0A6A5Q627_YEASX 1-387 
    10353 uL30 | 60S ribosomal protein L7-A | A0A6V8RJA7_YEASX 1-244 
    10354 uL4 | BJ4_G0008850.mRNA.1.CDS.1 | A0A6A5Q3W0_YEASX 1-362 
    10355 uL5 | BJ4_G0027750.mRNA.1.CDS.1 | A0A6A5Q7I9_YEASX 1-174 
    10356 uL6 | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    10357 uS10 | 40S ribosomal protein S20 | A0A6A5PVE9_YEASX 1-121 
    10358 uS11 | 40S ribosomal protein S14-A | A0A6L1AAG7_YEASX 1-137 
    10359 uS12 | 40S ribosomal protein S23 | A0A6L1B1T2_YEASX 1-145 
    10360 uS13 | 40S ribosomal protein S18-B | A0A6L1AIT6_YEASX 1-146 
    10361 uS14 | HLJ1_G0030400.mRNA.1.CDS.1 | A0A6A5PV92_YEASX 1-56 
    10362 uS15 | 40S ribosomal protein S13 | A0A6L0YFM5_YEASX 1-151 
    10363 uS17 | 40S ribosomal protein S11-B | A0A6L0YMX6_YEASX 1-156 
    10364 uS19 | 40S ribosomal protein S15 | A0A6A5Q6F2_YEASX 1-142 
    10365 uS2 | 40S ribosomal protein S0 | A0A6L0ZRP4_YEASX 1-252 
    10366 uS3 | BJ4_G0045400.mRNA.1.CDS.1 | A0A6L0ZVK6_YEASX 1-240 
    10367 uS4 | BJ4_G0026100.mRNA.1.CDS.1 | A0A7I9GPQ3_YEASX 1-197 
    10368 uS5 | 40S ribosomal protein S2 | A0A6A5PWF7_YEASX 1-254 
    10369 uS7 | Rps5p | A0A1L4AA68_YEASX 1-225 
    10370 uS8 | 40S ribosomal protein S22-A | A0A6A5PSE9_YEASX 1-130 
    10371 uS9 | BJ4_G0008010.mRNA.1.CDS.1 | A0A6L0YQ58_YEASX 1-143 
    10372  
    10373 
    10374 > select /uS*
    10375 
    10376 34320 atoms, 34900 bonds, 17 pseudobonds, 4395 residues, 6 models selected 
    10377 
    10378 > select /eS*
    10379 
    10380 33073 atoms, 33567 bonds, 21 pseudobonds, 4183 residues, 6 models selected 
    10381 
    10382 > select add /uS*
    10383 
    10384 67393 atoms, 68467 bonds, 38 pseudobonds, 8578 residues, 6 models selected 
    10385 
    10386 > select ~sel & ##selected
    10387 
    10388 347724 atoms, 375809 bonds, 10166 pseudobonds, 26893 residues, 8 models
    10389 selected 
    10390 
    10391 > select add /mRNA
    10392 
    10393 347724 atoms, 375809 bonds, 10166 pseudobonds, 26893 residues, 8 models
    10394 selected 
    10395 
    10396 > select /eS*
    10397 
    10398 33073 atoms, 33567 bonds, 21 pseudobonds, 4183 residues, 6 models selected 
    10399 
    10400 > select add /uS*
    10401 
    10402 67393 atoms, 68467 bonds, 38 pseudobonds, 8578 residues, 6 models selected 
    10403 
    10404 > select add /mRNA
    10405 
    10406 67628 atoms, 68727 bonds, 38 pseudobonds, 8590 residues, 6 models selected 
    10407 
    10408 > select add /18S
    10409 
    10410 141363 atoms, 150942 bonds, 3028 pseudobonds, 12268 residues, 8 models
    10411 selected 
    10412 
    10413 > select add /5S
    10414 
    10415 146523 atoms, 156710 bonds, 3246 pseudobonds, 12510 residues, 12 models
    10416 selected 
    10417 
    10418 > select add /58S
    10419 
    10420 153245 atoms, 164202 bonds, 3413 pseudobonds, 12842 residues, 12 models
    10421 selected 
    10422 
    10423 > select subtract /58S
    10424 
    10425 146523 atoms, 156710 bonds, 3246 pseudobonds, 12510 residues, 12 models
    10426 selected 
    10427 
    10428 > select add /rRACK
    10429 
    10430 146523 atoms, 156710 bonds, 3246 pseudobonds, 12510 residues, 12 models
    10431 selected 
    10432 
    10433 > select add /RACK
    10434 
    10435 151395 atoms, 161688 bonds, 3246 pseudobonds, 13146 residues, 12 models
    10436 selected 
    10437 
    10438 > color (#!61 & sel) dim gray
    10439 
    10440 > show #!59 models
    10441 
    10442 > hide #!61 models
    10443 
    10444 > hide #!59 models
    10445 
    10446 > show #!61 models
    10447 
    10448 > show #!59 models
    10449 
    10450 > hide #!61 models
    10451 
    10452 > select add #58
    10453 
    10454 357951 atoms, 383523 bonds, 7652 pseudobonds, 30107 residues, 13 models
    10455 selected 
    10456 
    10457 > select subtract #58
    10458 
    10459 148815 atoms, 158804 bonds, 3139 pseudobonds, 13025 residues, 10 models
    10460 selected 
    10461 
    10462 > select add #59
    10463 
    10464 353986 atoms, 379027 bonds, 7456 pseudobonds, 29968 residues, 11 models
    10465 selected 
    10466 
    10467 > select subtract #59
    10468 
    10469 146235 atoms, 155920 bonds, 3028 pseudobonds, 12904 residues, 8 models
    10470 selected 
    10471 
    10472 > select add #60
    10473 
    10474 280135 atoms, 299484 bonds, 6634 pseudobonds, 24175 residues, 8 models
    10475 selected 
    10476 
    10477 > select subtract #60
    10478 
    10479 72084 atoms, 76922 bonds, 1499 pseudobonds, 6307 residues, 4 models selected 
    10480 
    10481 > show #!60 models
    10482 
    10483 > hide #!60 models
    10484 
    10485 > show #!61 models
    10486 
    10487 > show #!58 models
    10488 
    10489 > hide #!58 models
    10490 
    10491 > select ~sel & ##selected
    10492 
    10493 134982 atoms, 144792 bonds, 3567 pseudobonds, 11296 residues, 4 models
    10494 selected 
    10495 
    10496 > hide #!59 models
    10497 
    10498 > select subtract /eEF2
    10499 
    10500 128375 atoms, 138063 bonds, 3558 pseudobonds, 10447 residues, 4 models
    10501 selected 
    10502 
    10503 > color (#!61 & sel) light sea green
    10504 
    10505 > select clear
    10506 
    10507 > hide #!61 models
    10508 
    10509 > show #!61 models
    10510 
    10511 > rename #61 "Swivel base, eEF2"
    10512 
    10513 > show #!51 models
    10514 
    10515 > hide #!51 models
    10516 
    10517 > show #!60 models
    10518 
    10519 > hide #!61 models
    10520 
    10521 > show #!51 models
    10522 
    10523 > show #!61 models
    10524 
    10525 > hide #!61 models
    10526 
    10527 > show #!61 models
    10528 
    10529 > hide #!60 models
    10530 
    10531 > show #!60 models
    10532 
    10533 > hide #!60 models
    10534 
    10535 > show #!52 models
    10536 
    10537 > hide #!52 models
    10538 
    10539 > show #!53 models
    10540 
    10541 > hide #!53 models
    10542 
    10543 > hide #!51 models
    10544 
    10545 > save
    10546 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/subunit_colouring2.cxs
    10547 > includeMaps true
    10548 
    10549 > show #!2 models
    10550 
    10551 > hide #!61 models
    10552 
    10553 > show #!52 models
    10554 
    10555 > hide #!2 models
    10556 
    10557 > select #52/jj:436
    10558 
    10559 4 atoms, 3 bonds, 1 residue, 1 model selected 
    10560 
    10561 > select add #52/ii:49
    10562 
    10563 24 atoms, 24 bonds, 2 residues, 1 model selected 
    10564 
    10565 > select add #52/2:9
    10566 
    10567 46 atoms, 48 bonds, 3 residues, 1 model selected 
    10568 
    10569 > select add #52/jj:402
    10570 
    10571 53 atoms, 54 bonds, 4 residues, 1 model selected 
    10572 
    10573 > select #52/jj:401
    10574 
    10575 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10576 
    10577 > select add #52/ii:13
    10578 
    10579 28 atoms, 28 bonds, 2 residues, 1 model selected 
    10580 
    10581 > select add #52/2:13
    10582 
    10583 48 atoms, 49 bonds, 3 residues, 1 model selected 
    10584 
    10585 > select add #52/3:7
    10586 
    10587 70 atoms, 73 bonds, 4 residues, 1 model selected 
    10588 
    10589 > select up
    10590 
    10591 4888 atoms, 5454 bonds, 236 residues, 1 model selected 
    10592 
    10593 > select up
    10594 
    10595 8208 atoms, 8844 bonds, 668 residues, 1 model selected 
    10596 
    10597 > select ~sel & ##selected
    10598 
    10599 212726 atoms, 228108 bonds, 5690 pseudobonds, 17518 residues, 4 models
    10600 selected 
    10601 
    10602 > hide
    10603 
    10604 > hide sel
    10605 
    10606 > hide #!52 models
    10607 
    10608 > show #!52 models
    10609 
    10610 > hide sel cartoons
    10611 
    10612 > hide #!52 models
    10613 
    10614 > show #!53 models
    10615 
    10616 > hide #!53 models
    10617 
    10618 > show #!52 models
    10619 
    10620 > show #!51 models
    10621 
    10622 > hide #!52 models
    10623 
    10624 > hide #!51 models
    10625 
    10626 > show #!52 models
    10627 
    10628 > show #!3 models
    10629 
    10630 > hide #!3 models
    10631 
    10632 > show #!2 models
    10633 
    10634 > show #!58 models
    10635 
    10636 > hide #!52 models
    10637 
    10638 > show #!52 models
    10639 
    10640 > hide #!2 models
    10641 
    10642 > hide #!52 models
    10643 
    10644 > show #!52 models
    10645 
    10646 > hide #!52 models
    10647 
    10648 > select #58/ET:52
    10649 
    10650 20 atoms, 21 bonds, 1 residue, 1 model selected 
    10651 
    10652 > select up
    10653 
    10654 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    10655 
    10656 > hide sel cartoons
    10657 
    10658 > show #!52 models
    10659 
    10660 > select add #52
    10661 
    10662 222578 atoms, 238788 bonds, 5887 pseudobonds, 18263 residues, 5 models
    10663 selected 
    10664 
    10665 > select add #58
    10666 
    10667 430070 atoms, 461671 bonds, 10400 pseudobonds, 35268 residues, 7 models
    10668 selected 
    10669 
    10670 > show #!2 models
    10671 
    10672 > ui tool show "Color Zone"
    10673 
    10674 > color zone #2 near sel distance 12
    10675 
    10676 > color single #2
    10677 
    10678 > hide #!2 models
    10679 
    10680 > select subtract #58
    10681 
    10682 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    10683 selected 
    10684 
    10685 > select add #58
    10686 
    10687 430070 atoms, 461671 bonds, 10400 pseudobonds, 35268 residues, 7 models
    10688 selected 
    10689 
    10690 > select subtract #58
    10691 
    10692 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    10693 selected 
    10694 
    10695 > select subtract #52
    10696 
    10697 Nothing selected 
    10698 
    10699 > hide #!58 models
    10700 
    10701 Drag select of 668 residues 
    10702 
    10703 > show #!58 models
    10704 
    10705 Drag select of 17673 residues, 11 pseudobonds 
    10706 
    10707 > show #!2 models
    10708 
    10709 > color zone #2 near sel distance 12
    10710 
    10711 > hide #!52 models
    10712 
    10713 > hide #!58 models
    10714 
    10715 > color zone #2 near sel distance 15
    10716 
    10717 > color #2 black models
    10718 
    10719 [Repeated 1 time(s)]
    10720 
    10721 > color #2 #fac8ffff models
    10722 
    10723 > color #2 #fff5fbff models
    10724 
    10725 > color #2 #fffffbff models
    10726 
    10727 > color #2 white models
    10728 
    10729 > color zone #2 near sel distance 15
    10730 
    10731 > hide #!2 models
    10732 
    10733 > show #!3 models
    10734 
    10735 > hide #!3 models
    10736 
    10737 > show #!2 models
    10738 
    10739 > volume #2 level 0.6072
    10740 
    10741 > volume #2 level 0.6
    10742 
    10743 > hide #!2 models
    10744 
    10745 > show #!3 models
    10746 
    10747 > volume #3 level 0.65
    10748 
    10749 > show #!2 models
    10750 
    10751 > hide #!2 models
    10752 
    10753 > select clear
    10754 
    10755 > show #!61 models
    10756 
    10757 > hide #!3 models
    10758 
    10759 > show #!52 models
    10760 
    10761 > hide #!52 models
    10762 
    10763 > select clear
    10764 
    10765 > select #61/ASIT:45
    10766 
    10767 20 atoms, 21 bonds, 1 residue, 1 model selected 
    10768 
    10769 > select add #61/PSIT:13
    10770 
    10771 40 atoms, 42 bonds, 2 residues, 1 model selected 
    10772 
    10773 > select up
    10774 
    10775 3280 atoms, 3663 bonds, 153 residues, 1 model selected 
    10776 
    10777 > hide sel cartoons
    10778 
    10779 > show #!52 models
    10780 
    10781 > select #52/3:52
    10782 
    10783 23 atoms, 25 bonds, 1 residue, 1 model selected 
    10784 
    10785 > select up
    10786 
    10787 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    10788 
    10789 > hide #!52 models
    10790 
    10791 Drag select of 16942 residues, 28 pseudobonds 
    10792 
    10793 > show #!3 models
    10794 
    10795 > color #3 #ffffb2ff models
    10796 
    10797 > color #3 white models
    10798 
    10799 > color zone #2 near sel distance 15
    10800 
    10801 > show #!2 models
    10802 
    10803 > hide #!2 models
    10804 
    10805 > show #!2 models
    10806 
    10807 [Repeated 1 time(s)]
    10808 
    10809 > hide #!3 models
    10810 
    10811 > undo
    10812 
    10813 [Repeated 1 time(s)]
    10814 
    10815 > show #!2 models
    10816 
    10817 > hide #!2 models
    10818 
    10819 > undo
    10820 
    10821 [Repeated 5 time(s)]
    10822 
    10823 > show #!2 models
    10824 
    10825 > hide #!3 models
    10826 
    10827 > hide #!2 models
    10828 
    10829 > show #!3 models
    10830 
    10831 > color zone #3 near sel distance 15
    10832 
    10833 > hide #!61 models
    10834 
    10835 > volume #3 level 0.7
    10836 
    10837 > show #!58 models
    10838 
    10839 > show #!61 models
    10840 
    10841 > hide #!58 models
    10842 
    10843 > show #!58 models
    10844 
    10845 > select add #58/L1:133
    10846 
    10847 204849 atoms, 1787 bonds, 28 pseudobonds, 17018 residues, 4 models selected 
    10848 
    10849 > hide #!3 models
    10850 
    10851 > hide #!58 models
    10852 
    10853 > show #!58 models
    10854 
    10855 > hide #!58 models
    10856 
    10857 > show #!58 models
    10858 
    10859 > hide #!61 models
    10860 
    10861 > select add #58/2S:2481
    10862 
    10863 204872 atoms, 1812 bonds, 28 pseudobonds, 17019 residues, 4 models selected 
    10864 
    10865 > select up
    10866 
    10867 276418 atoms, 81796 bonds, 28 pseudobonds, 20441 residues, 4 models selected 
    10868 
    10869 > hide #!58 models
    10870 
    10871 > show #!3 models
    10872 
    10873 > color zone #3 near sel distance 15
    10874 
    10875 > show #!58 models
    10876 
    10877 > select add #58/31:117
    10878 
    10879 276426 atoms, 81803 bonds, 28 pseudobonds, 20442 residues, 4 models selected 
    10880 
    10881 > select up
    10882 
    10883 276536 atoms, 81915 bonds, 28 pseudobonds, 20457 residues, 4 models selected 
    10884 
    10885 > select up
    10886 
    10887 277563 atoms, 82956 bonds, 28 pseudobonds, 20594 residues, 4 models selected 
    10888 
    10889 > select up
    10890 
    10891 278095 atoms, 301007 bonds, 28 pseudobonds, 21095 residues, 4 models selected 
    10892 
    10893 > select up
    10894 
    10895 637136 atoms, 683385 bonds, 28 pseudobonds, 52871 residues, 4 models selected 
    10896 
    10897 > select down
    10898 
    10899 278095 atoms, 301007 bonds, 28 pseudobonds, 21095 residues, 4 models selected 
    10900 
    10901 > select up
    10902 
    10903 637136 atoms, 683385 bonds, 28 pseudobonds, 52871 residues, 4 models selected 
    10904 
    10905 > select down
    10906 
    10907 278095 atoms, 301007 bonds, 28 pseudobonds, 21095 residues, 4 models selected 
    10908 
    10909 > select add #58/20:99
    10910 
    10911 278103 atoms, 301014 bonds, 28 pseudobonds, 21096 residues, 4 models selected 
    10912 
    10913 > select up
    10914 
    10915 278154 atoms, 301065 bonds, 28 pseudobonds, 21102 residues, 4 models selected 
    10916 
    10917 > select up
    10918 
    10919 278951 atoms, 301873 bonds, 28 pseudobonds, 21202 residues, 4 models selected 
    10920 
    10921 > color zone #3 near sel distance 15
    10922 
    10923 > hide #!58 models
    10924 
    10925 > hide #!3 models
    10926 
    10927 > show #!4 models
    10928 
    10929 > color #4 #ffffb2ff models
    10930 
    10931 > color #4 white models
    10932 
    10933 > show #!58 models
    10934 
    10935 > hide #!4 models
    10936 
    10937 Drag select of 17005 residues, 11 pseudobonds 
    10938 [Repeated 1 time(s)]
    10939 
    10940 > show #!4 models
    10941 
    10942 > color zone #3 near sel distance 15
    10943 
    10944 > hide #!4 models
    10945 
    10946 > show #!3 models
    10947 
    10948 [Repeated 1 time(s)]
    10949 
    10950 > hide #!3 models
    10951 
    10952 > color zone #4 near sel distance 24
    10953 
    10954 > color zone #4 near sel distance 15
    10955 
    10956 [Repeated 1 time(s)]
    10957 
    10958 > volume #4 level 0.5353
    10959 
    10960 > hide #!58 models
    10961 
    10962 > show #!3 models
    10963 
    10964 > show #!2 models
    10965 
    10966 > hide #!4 models
    10967 
    10968 > hide #!3 models
    10969 
    10970 > hide #!2 models
    10971 
    10972 > show #!3 models
    10973 
    10974 > show #!53 models
    10975 
    10976 > hide #!53 models
    10977 
    10978 > show #!61 models
    10979 
    10980 > hide #!61 models
    10981 
    10982 > show #!59 models
    10983 
    10984 > hide #!59 models
    10985 
    10986 > show #!53 models
    10987 
    10988 > hide #!53 models
    10989 
    10990 Drag select of 3 MultiPostProcessor_PPout_3.mrc 
    10991 
    10992 > select clear
    10993 
    10994 Drag select of 3 MultiPostProcessor_PPout_3.mrc 
    10995 
    10996 > select clear
    10997 
    10998 > show #!4 models
    10999 
    11000 > hide #!3 models
    11001 
    11002 > hide #!4 models
    11003 
    11004 > show #!5 models
    11005 
    11006 > color #5 #ffbf99ff models
    11007 
    11008 > color #5 #ffff99ff models
    11009 
    11010 > color #5 white models
    11011 
    11012 > show #!58 models
    11013 
    11014 > show #!53 models
    11015 
    11016 > hide #!5 models
    11017 
    11018 Drag select of 17445 residues, 11 pseudobonds 
    11019 
    11020 > color zone #5 near sel distance 24
    11021 
    11022 > show #!5 models
    11023 
    11024 > hide #!53 models
    11025 
    11026 > hide #!58 models
    11027 
    11028 > show #!53 models
    11029 
    11030 > select #53/eI:145
    11031 
    11032 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11033 
    11034 > select up
    11035 
    11036 71 atoms, 71 bonds, 9 residues, 1 model selected 
    11037 
    11038 > select up
    11039 
    11040 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    11041 
    11042 > color sel purple
    11043 
    11044 > show #!52 models
    11045 
    11046 > hide #!52 models
    11047 
    11048 > color zone #5 near sel distance 24
    11049 
    11050 > show #!58 models
    11051 
    11052 Drag select of 17445 residues, 11 pseudobonds, 5
    11053 MultiPostProcessor_PPout_5.mrc 
    11054 
    11055 > color zone #5 near sel distance 24
    11056 
    11057 > hide #!5 models
    11058 
    11059 > show #!6 models
    11060 
    11061 > hide #!53 models
    11062 
    11063 > hide #!58 models
    11064 
    11065 > color #6 #ffbfe5ff models
    11066 
    11067 > color #6 #ffffe5ff models
    11068 
    11069 > color #6 white models
    11070 
    11071 > show #!61 models
    11072 
    11073 > hide #!6 models
    11074 
    11075 > hide #!61 models
    11076 
    11077 > show #!58 models
    11078 
    11079 > show #!53 models
    11080 
    11081 > hide #!58 models
    11082 
    11083 Drag select of 362 residues 
    11084 Drag select of 364 residues 
    11085 
    11086 > select add #61
    11087 
    11088 209259 atoms, 221714 bonds, 5069 pseudobonds, 17967 residues, 5 models
    11089 selected 
    11090 
    11091 > color zone #6 near sel distance 24
    11092 
    11093 > show #!6 models
    11094 
    11095 > hide #!6 models
    11096 
    11097 > show #!8 models
    11098 
    11099 > color #8 #ffb2b2ff models
    11100 
    11101 > color #8 #ffffb2ff models
    11102 
    11103 > color #8 white models
    11104 
    11105 > show #!51 models
    11106 
    11107 > hide #!53 models
    11108 
    11109 > select clear
    11110 
    11111 > hide #!8 models
    11112 
    11113 > select #51/q3:46
    11114 
    11115 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11116 
    11117 > select add #51/33:14
    11118 
    11119 45 atoms, 49 bonds, 2 residues, 1 model selected 
    11120 
    11121 > select up
    11122 
    11123 3183 atoms, 3560 bonds, 149 residues, 1 model selected 
    11124 
    11125 > show #!59 models
    11126 
    11127 > hide #!51 models
    11128 
    11129 Drag select of 17064 residues, 12 pseudobonds 
    11130 
    11131 > color zone #8 near sel distance 24
    11132 
    11133 > show #!8 models
    11134 
    11135 > select subtract /PT
    11136 
    11137 209290 atoms, 3560 bonds, 12 pseudobonds, 17136 residues, 3 models selected 
    11138 
    11139 > color zone #8 near sel distance 24
    11140 
    11141 > hide #!59 models
    11142 
    11143 > show #!61 models
    11144 
    11145 > select add #61/eEF2:724
    11146 
    11147 209298 atoms, 3567 bonds, 12 pseudobonds, 17137 residues, 4 models selected 
    11148 
    11149 > select up
    11150 
    11151 209404 atoms, 3676 bonds, 12 pseudobonds, 17150 residues, 4 models selected 
    11152 
    11153 > select up
    11154 
    11155 215859 atoms, 10255 bonds, 12 pseudobonds, 17978 residues, 4 models selected 
    11156 
    11157 > color zone #8 near sel distance 24
    11158 
    11159 > hide #!61 models
    11160 
    11161 > hide #!8 models
    11162 
    11163 > show #!10 models
    11164 
    11165 > color #10 white models
    11166 
    11167 > select clear
    11168 
    11169 > show #!52 models
    11170 
    11171 > hide #!10 models
    11172 
    11173 Drag select of 668 residues 
    11174 
    11175 > select #52/jj:142
    11176 
    11177 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11178 
    11179 > select add #52/ii:51
    11180 
    11181 27 atoms, 27 bonds, 2 residues, 1 model selected 
    11182 
    11183 > select add #52/2:20
    11184 
    11185 47 atoms, 48 bonds, 3 residues, 1 model selected 
    11186 
    11187 > select up
    11188 
    11189 3335 atoms, 3716 bonds, 165 residues, 1 model selected 
    11190 
    11191 > select up
    11192 
    11193 6615 atoms, 7065 bonds, 593 residues, 1 model selected 
    11194 
    11195 > show #!58 models
    11196 
    11197 > hide #!52 models
    11198 
    11199 Drag select of 17005 residues, 11 pseudobonds 
    11200 
    11201 > hide #!58 models
    11202 
    11203 > show #!53 models
    11204 
    11205 Drag select of 364 residues 
    11206 
    11207 > show #!10 models
    11208 
    11209 > color zone #10 near sel distance 24
    11210 
    11211 > hide #!53 models
    11212 
    11213 > show #!8 models
    11214 
    11215 > show #!6 models
    11216 
    11217 > show #!5 models
    11218 
    11219 > show #!4 models
    11220 
    11221 > show #!3 models
    11222 
    11223 > show #!2 models
    11224 
    11225 > hide #!2 models
    11226 
    11227 > hide #!3 models
    11228 
    11229 > hide #!4 models
    11230 
    11231 > hide #!6 models
    11232 
    11233 > hide #!8 models
    11234 
    11235 > hide #!10 models
    11236 
    11237 > hide #!5 models
    11238 
    11239 > show #!2 models
    11240 
    11241 > show #!3 models
    11242 
    11243 > hide #!2 models
    11244 
    11245 > hide #!3 models
    11246 
    11247 > show #!4 models
    11248 
    11249 > hide #!4 models
    11250 
    11251 > show #!6 models
    11252 
    11253 > hide #!6 models
    11254 
    11255 > show #!6 models
    11256 
    11257 > show #!2 models
    11258 
    11259 > hide #!6 models
    11260 
    11261 > show #!10 models
    11262 
    11263 > hide #!10 models
    11264 
    11265 > hide #!2 models
    11266 
    11267 > show #!3 models
    11268 
    11269 > hide #!3 models
    11270 
    11271 > show #!4 models
    11272 
    11273 > show #!2 models
    11274 
    11275 > hide #!4 models
    11276 
    11277 > show #!3 models
    11278 
    11279 > hide #!2 models
    11280 
    11281 > hide #!3 models
    11282 
    11283 > show #!4 models
    11284 
    11285 > hide #!4 models
    11286 
    11287 > show #!5 models
    11288 
    11289 > volume #5 level 0.6765
    11290 
    11291 > show #!2 models
    11292 
    11293 > hide #!5 models
    11294 
    11295 > select up
    11296 
    11297 216408 atoms, 7177 bonds, 11 pseudobonds, 17965 residues, 4 models selected 
    11298 
    11299 > select up
    11300 
    11301 635032 atoms, 681853 bonds, 11 pseudobonds, 52166 residues, 4 models selected 
    11302 
    11303 > select up
    11304 
    11305 635032 atoms, 681853 bonds, 4513 pseudobonds, 52166 residues, 5 models
    11306 selected 
    11307 
    11308 > select up
    11309 
    11310 635032 atoms, 681853 bonds, 4513 pseudobonds, 52166 residues, 5 models
    11311 selected 
    11312 
    11313 > select up
    11314 
    11315 1477583 atoms, 1585013 bonds, 4513 pseudobonds, 122647 residues, 25 models
    11316 selected 
    11317 
    11318 > select clear
    11319 
    11320 > volume #1-10 level 0.7
    11321 
    11322 > volume #1-10 level 0.77
    11323 
    11324 > volume #1-10 level 0.7
    11325 
    11326 > volume #2 level 0.65
    11327 
    11328 > hide #!2 models
    11329 
    11330 > show #!3 models
    11331 
    11332 > hide #!3 models
    11333 
    11334 > show #!4 models
    11335 
    11336 > volume #4 level 0.6
    11337 
    11338 > hide #!4 models
    11339 
    11340 > show #!5 models
    11341 
    11342 > volume #4 level 0.55
    11343 
    11344 > show #!4 models
    11345 
    11346 > hide #!5 models
    11347 
    11348 > show #!3 models
    11349 
    11350 > hide #!4 models
    11351 
    11352 > show #!2 models
    11353 
    11354 > hide #!3 models
    11355 
    11356 > show #!4 models
    11357 
    11358 > hide #!4 models
    11359 
    11360 > hide #!2 models
    11361 
    11362 > show #!4 models
    11363 
    11364 > show #!5 models
    11365 
    11366 > hide #!4 models
    11367 
    11368 > show #!2 models
    11369 
    11370 > hide #!2 models
    11371 
    11372 > show #!2 models
    11373 
    11374 > hide #!5 models
    11375 
    11376 > show #!5 models
    11377 
    11378 > hide #!2 models
    11379 
    11380 > volume #5 level 0.65
    11381 
    11382 > show #!6 models
    11383 
    11384 > hide #!5 models
    11385 
    11386 > hide #!6 models
    11387 
    11388 > show #!8 models
    11389 
    11390 > volume #8 level 0.6
    11391 
    11392 > hide #!8 models
    11393 
    11394 > show #!10 models
    11395 
    11396 > volume #10 level 0.65
    11397 
    11398 > volume #10 level 0.66
    11399 
    11400 > volume #10 level 0.6
    11401 
    11402 > volume #10 level 0.65
    11403 
    11404 > hide #!10 models
    11405 
    11406 > show #!8 models
    11407 
    11408 > show #!10 models
    11409 
    11410 > hide #!10 models
    11411 
    11412 > hide #!8 models
    11413 
    11414 > show #!6 models
    11415 
    11416 > hide #!6 models
    11417 
    11418 > show #!8 models
    11419 
    11420 > hide #!8 models
    11421 
    11422 > show #!10 models
    11423 
    11424 > hide #!10 models
    11425 
    11426 > show #!6 models
    11427 
    11428 > hide #!6 models
    11429 
    11430 > show #!5 models
    11431 
    11432 > hide #!5 models
    11433 
    11434 > show #!4 models
    11435 
    11436 > hide #!4 models
    11437 
    11438 > show #!3 models
    11439 
    11440 > hide #!3 models
    11441 
    11442 > show #!2 models
    11443 
    11444 > volume #2 level 0.66
    11445 
    11446 > volume #2 level 0.6
    11447 
    11448 > show #!4 models
    11449 
    11450 > hide #!2 models
    11451 
    11452 > volume #4 level 0.5
    11453 
    11454 > volume #4 level 0.55
    11455 
    11456 > hide #!4 models
    11457 
    11458 > show #!5 models
    11459 
    11460 > hide #!5 models
    11461 
    11462 > show #!6 models
    11463 
    11464 > hide #!6 models
    11465 
    11466 > show #!8 models
    11467 
    11468 > hide #!8 models
    11469 
    11470 > show #!10 models
    11471 
    11472 > hide #!10 models
    11473 
    11474 > show #!4 models
    11475 
    11476 > show #!3 models
    11477 
    11478 > hide #!4 models
    11479 
    11480 > show #!5 models
    11481 
    11482 > hide #!3 models
    11483 
    11484 > open
    11485 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Class3D/job270/run_it025_class001.mrc
    11486 
    11487 Opened run_it025_class001.mrc as #1, grid size 128,128,128, pixel 4, shown at
    11488 level 0.272, step 1, values float32 
    11489 
    11490 > open
    11491 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Class3D/job270/run_it025_class002.mrc
    11492 
    11493 Opened run_it025_class002.mrc as #7, grid size 128,128,128, pixel 4, shown at
    11494 level 0.257, step 1, values float32 
    11495 
    11496 > open
    11497 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Class3D/job270/run_it025_class003.mrc
    11498 
    11499 Opened run_it025_class003.mrc as #9, grid size 128,128,128, pixel 4, shown at
    11500 level 0.241, step 1, values float32 
    11501 
    11502 > open
    11503 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Class3D/job270/run_it025_class004.mrc
    11504 
    11505 Opened run_it025_class004.mrc as #11, grid size 128,128,128, pixel 4, shown at
    11506 level 0.274, step 1, values float32 
    11507 
    11508 > open
    11509 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Class3D/job270/run_it025_class005.mrc
    11510 
    11511 Opened run_it025_class005.mrc as #12, grid size 128,128,128, pixel 4, shown at
    11512 level 0.268, step 1, values float32 
    11513 
    11514 > show #!4 models
    11515 
    11516 > hide #!4 models
    11517 
    11518 > hide #!5 models
    11519 
    11520 > volume #1-10 level 0.7
    11521 
    11522 > volume #1-10 level 0.6
    11523 
    11524 > hide #!7 models
    11525 
    11526 > hide #!9 models
    11527 
    11528 > hide #!11 models
    11529 
    11530 > hide #!12 models
    11531 
    11532 > show #!58 models
    11533 
    11534 > hide #!58 models
    11535 
    11536 > show #!58 models
    11537 
    11538 > hide #!58 models
    11539 
    11540 > show #!59 models
    11541 
    11542 > hide #!1 models
    11543 
    11544 > show #!7 models
    11545 
    11546 > volume #1-10 level 0.5
    11547 
    11548 > hide #!7 models
    11549 
    11550 > show #!9 models
    11551 
    11552 > hide #!9 models
    11553 
    11554 > show #!11 models
    11555 
    11556 > volume #1-10 level 0.6
    11557 
    11558 > volume #1-30 level 0.6
    11559 
    11560 > hide #!11 models
    11561 
    11562 > show #!12 models
    11563 
    11564 > hide #!12 models
    11565 
    11566 > hide #!59 models
    11567 
    11568 > close #1,7,9,11-12
    11569 
    11570 > rename #2 id #1
    11571 
    11572 > rename #3 id #2
    11573 
    11574 > rename #4 id #3
    11575 
    11576 > rename #5 id #4
    11577 
    11578 > rename #6 id #5
    11579 
    11580 > rename #8 id #6
    11581 
    11582 > rename #10 id #7
    11583 
    11584 > show #!1 models
    11585 
    11586 > show #!2 models
    11587 
    11588 > show #!3 models
    11589 
    11590 > show #!4 models
    11591 
    11592 > show #!5 models
    11593 
    11594 > show #!6 models
    11595 
    11596 > show #!7 models
    11597 
    11598 > hide #!4 models
    11599 
    11600 > hide #!6 models
    11601 
    11602 > show #!6 models
    11603 
    11604 > hide #!7 models
    11605 
    11606 > hide #!5 models
    11607 
    11608 > show #!5 models
    11609 
    11610 > hide #!5 models
    11611 
    11612 > hide #!3 models
    11613 
    11614 > show #!3 models
    11615 
    11616 > hide #!3 models
    11617 
    11618 > hide #!2 models
    11619 
    11620 > show #!2 models
    11621 
    11622 > hide #!2 models
    11623 
    11624 > hide #!1 models
    11625 
    11626 > show #!1 models
    11627 
    11628 > hide #!6 models
    11629 
    11630 > show #!6 models
    11631 
    11632 > hide #!1 models
    11633 
    11634 > show #!58 models
    11635 
    11636 > hide #!58 models
    11637 
    11638 > show #!59 models
    11639 
    11640 > select #59/PT:45
    11641 
    11642 22 atoms, 24 bonds, 1 residue, 1 model selected 
    11643 
    11644 > select up
    11645 
    11646 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    11647 
    11648 > color sel cyan
    11649 
    11650 > hide #!6 models
    11651 
    11652 > color sel blue
    11653 
    11654 > hide #!59 models
    11655 
    11656 > show #!59 models
    11657 
    11658 > hide #!59 models
    11659 
    11660 > show #!59 models
    11661 
    11662 > show #!6 models
    11663 
    11664 > hide #!6 models
    11665 
    11666 > show #!7 models
    11667 
    11668 > show #!5 models
    11669 
    11670 > hide #!7 models
    11671 
    11672 > hide #!5 models
    11673 
    11674 > show #!4 models
    11675 
    11676 > hide #!4 models
    11677 
    11678 > show #!3 models
    11679 
    11680 > hide #!3 models
    11681 
    11682 > show #!2 models
    11683 
    11684 > show #!1 models
    11685 
    11686 > hide #!2 models
    11687 
    11688 > hide #!1 models
    11689 
    11690 > show #!2 models
    11691 
    11692 > hide #!2 models
    11693 
    11694 > show #!1 models
    11695 
    11696 > hide #!1 models
    11697 
    11698 > show #!2 models
    11699 
    11700 > hide #!59 models
    11701 
    11702 > show #!58 models
    11703 
    11704 > hide #!2 models
    11705 
    11706 > show #!1 models
    11707 
    11708 > hide #!58 models
    11709 
    11710 > show #!58 models
    11711 
    11712 > hide #!58 models
    11713 
    11714 > show #!52 models
    11715 
    11716 > show #!2 models
    11717 
    11718 > hide #!1 models
    11719 
    11720 > show #!59 models
    11721 
    11722 > hide #!52 models
    11723 
    11724 > show #!52 models
    11725 
    11726 > hide #!52 models
    11727 
    11728 > hide #!2 models
    11729 
    11730 > color sel lime
    11731 
    11732 > hide #!59 models
    11733 
    11734 > show #!52 models
    11735 
    11736 > select #52/3:52
    11737 
    11738 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11739 
    11740 > select up
    11741 
    11742 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    11743 
    11744 > color sel blue
    11745 
    11746 > color sel cornflower blue
    11747 
    11748 > show #!1 models
    11749 
    11750 > hide #!1 models
    11751 
    11752 Drag select of 668 residues 
    11753 
    11754 > show #!58 models
    11755 
    11756 Drag select of 17673 residues, 11 pseudobonds 
    11757 
    11758 > show #!1 models
    11759 
    11760 > color zone #1 near sel distance 15
    11761 
    11762 > hide #!1 models
    11763 
    11764 > show #!2 models
    11765 
    11766 > show #!61 models
    11767 
    11768 > hide #!52 models
    11769 
    11770 > hide #!58 models
    11771 
    11772 > hide #!2 models
    11773 
    11774 Drag select of 16942 residues, 28 pseudobonds 
    11775 
    11776 > show #!2 models
    11777 
    11778 > show #!52 models
    11779 
    11780 > hide #!61 models
    11781 
    11782 > show #!61 models
    11783 
    11784 > hide #!2 models
    11785 
    11786 > hide #!61 models
    11787 
    11788 > show #!51 models
    11789 
    11790 > show #!2 models
    11791 
    11792 > show #!61 models
    11793 
    11794 > hide #!61 models
    11795 
    11796 > hide #!52 models
    11797 
    11798 > show #!58 models
    11799 
    11800 > hide #!58 models
    11801 
    11802 > show #!61 models
    11803 
    11804 > hide #!51 models
    11805 
    11806 > hide #!2 models
    11807 
    11808 > show #!2 models
    11809 
    11810 > show #!59 models
    11811 
    11812 > show #!58 models
    11813 
    11814 > hide #!59 models
    11815 
    11816 > hide #!58 models
    11817 
    11818 > hide #!61 models
    11819 
    11820 > show #!52 models
    11821 
    11822 > show #!61 models
    11823 
    11824 > hide #!61 models
    11825 
    11826 > select add #52/3:53
    11827 
    11828 203270 atoms, 25 bonds, 28 pseudobonds, 16943 residues, 3 models selected 
    11829 
    11830 > select up
    11831 
    11832 204840 atoms, 1779 bonds, 28 pseudobonds, 17017 residues, 3 models selected 
    11833 
    11834 > color zone #2 near sel distance 15
    11835 
    11836 > show #!58 models
    11837 
    11838 > hide #!2 models
    11839 
    11840 > hide #!52 models
    11841 
    11842 > show #!2 models
    11843 
    11844 > hide #!2 models
    11845 
    11846 > show #!1 models
    11847 
    11848 > hide #!1 models
    11849 
    11850 Drag select of 17005 residues, 11 pseudobonds 
    11851 
    11852 > select subtract /PT
    11853 
    11854 410688 atoms, 1779 bonds, 39 pseudobonds, 33945 residues, 5 models selected 
    11855 
    11856 > show #!2 models
    11857 
    11858 > color zone #2 near sel distance 15
    11859 
    11860 > hide #!58 models
    11861 
    11862 > select clear
    11863 
    11864 > show #!1 models
    11865 
    11866 > hide #!1 models
    11867 
    11868 > show #!1 models
    11869 
    11870 > hide #!2 models
    11871 
    11872 > show #!2 models
    11873 
    11874 > hide #!2 models
    11875 
    11876 > show #!2 models
    11877 
    11878 > hide #!2 models
    11879 
    11880 > show #!2 models
    11881 
    11882 > hide #!1 models
    11883 
    11884 > hide #!2 models
    11885 
    11886 > show #!3 models
    11887 
    11888 > show #!4 models
    11889 
    11890 > show #!5 models
    11891 
    11892 > show #!6 models
    11893 
    11894 > show #!7 models
    11895 
    11896 > hide #!7 models
    11897 
    11898 > hide #!6 models
    11899 
    11900 > hide #!5 models
    11901 
    11902 > hide #!4 models
    11903 
    11904 > hide #!3 models
    11905 
    11906 > show #!3 models
    11907 
    11908 > show #!7 models
    11909 
    11910 > show #!6 models
    11911 
    11912 > show #!2 models
    11913 
    11914 > hide #!2 models
    11915 
    11916 > show #!2 models
    11917 
    11918 > show #!1 models
    11919 
    11920 > hide #!1 models
    11921 
    11922 > show #!1 models
    11923 
    11924 > hide #!1 models
    11925 
    11926 > hide #!2 models
    11927 
    11928 > hide #!3 models
    11929 
    11930 > hide #!6 models
    11931 
    11932 > hide #!7 models
    11933 
    11934 > open
    11935 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/270_subclRot_from160_tRNAcleft_T6C5/1/MultiPostProcessor_PPout_1.mrc
    11936 
    11937 Opened MultiPostProcessor_PPout_1.mrc as #8, grid size 128,128,128, pixel 4,
    11938 shown at level 0.863, step 1, values float32 
    11939 
    11940 > open
    11941 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/270_subclRot_from160_tRNAcleft_T6C5/2/MultiPostProcessor_PPout_2.mrc
    11942 
    11943 Opened MultiPostProcessor_PPout_2.mrc as #9, grid size 128,128,128, pixel 4,
    11944 shown at level 0.855, step 1, values float32 
    11945 
    11946 > open
    11947 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/270_subclRot_from160_tRNAcleft_T6C5/3/MultiPostProcessor_PPout_3.mrc
    11948 
    11949 Opened MultiPostProcessor_PPout_3.mrc as #10, grid size 128,128,128, pixel 4,
    11950 shown at level 0.899, step 1, values float32 
    11951 
    11952 > open
    11953 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/270_subclRot_from160_tRNAcleft_T6C5/4/MultiPostProcessor_PPout_4.mrc
    11954 
    11955 Opened MultiPostProcessor_PPout_4.mrc as #11, grid size 128,128,128, pixel 4,
    11956 shown at level 0.816, step 1, values float32 
    11957 
    11958 > open
    11959 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/MultiPostProcessor/270_subclRot_from160_tRNAcleft_T6C5/5/MultiPostProcessor_PPout_5.mrc
    11960 
    11961 Opened MultiPostProcessor_PPout_5.mrc as #12, grid size 128,128,128, pixel 4,
    11962 shown at level 0.868, step 1, values float32 
    11963 
    11964 > volume #1-30 level 0.6
    11965 
    11966 > hide #!9 models
    11967 
    11968 > hide #!10 models
    11969 
    11970 > hide #!11 models
    11971 
    11972 > hide #!12 models
    11973 
    11974 > hide #!8 models
    11975 
    11976 > show #!9 models
    11977 
    11978 > show #!52 models
    11979 
    11980 > hide #!52 models
    11981 
    11982 > show #!51 models
    11983 
    11984 > hide #!9 models
    11985 
    11986 > show #!10 models
    11987 
    11988 > show #!11 models
    11989 
    11990 > hide #!10 models
    11991 
    11992 > show #!12 models
    11993 
    11994 > hide #!11 models
    11995 
    11996 > show #!52 models
    11997 
    11998 > hide #!52 models
    11999 
    12000 > show #!53 models
    12001 
    12002 > hide #!53 models
    12003 
    12004 > show #!53 models
    12005 
    12006 > show #!3 models
    12007 
    12008 > hide #!3 models
    12009 
    12010 > show #!4 models
    12011 
    12012 > hide #!12 models
    12013 
    12014 > hide #!51 models
    12015 
    12016 > hide #!53 models
    12017 
    12018 > show #!9 models
    12019 
    12020 > show #!11 models
    12021 
    12022 > hide #!4 models
    12023 
    12024 > hide #!11 models
    12025 
    12026 > show #!8 models
    12027 
    12028 > hide #!8 models
    12029 
    12030 > hide #!9 models
    12031 
    12032 > show #!9 models
    12033 
    12034 > show #!10 models
    12035 
    12036 > open
    12037 > /Users/campbell/Desktop/workspaces/hd_tn298-HSCombine42C30C/Refine3D/job266/run_ct19_class001.mrc
    12038 
    12039 Opened run_ct19_class001.mrc as #13, grid size 128,128,128, pixel 4, shown at
    12040 level 0.894, step 1, values float32 
    12041 
    12042 > hide #!9 models
    12043 
    12044 > hide #!10 models
    12045 
    12046 > volume #1-30 level 0.6
    12047 
    12048 > show #!52 models
    12049 
    12050 > fitmap #1-40 inMap #50 eachModel true
    12051 
    12052 Fit map MultiPostProcessor_PPout_2.mrc in map Stable_60S.mrc using 61494
    12053 points 
    12054 correlation = 0.7972, correlation about mean = 0.3714, overlap = 2.908e+04 
    12055 steps = 60, shift = 0.0149, angle = 0.0175 degrees 
    12056  
    12057 Position of MultiPostProcessor_PPout_2.mrc (#1) relative to Stable_60S.mrc
    12058 (#50) coordinates: 
    12059 Matrix rotation and translation 
    12060 0.99996069 0.00834456 0.00299651 -3.02823774 
    12061 -0.00833904 0.99996352 -0.00184959 2.27584414 
    12062 -0.00301184 0.00182453 0.99999380 -0.22546558 
    12063 Axis 0.20288702 0.33178492 -0.92127934 
    12064 Axis point 257.42188875 372.58339778 0.00000000 
    12065 Rotation angle (degrees) 0.51879664 
    12066 Shift along axis 0.34841741 
    12067  
    12068 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 65267
    12069 points 
    12070 correlation = 0.7898, correlation about mean = 0.3762, overlap = 3.187e+04 
    12071 steps = 84, shift = 0.037, angle = 0.00881 degrees 
    12072  
    12073 Position of MultiPostProcessor_PPout_3.mrc (#2) relative to Stable_60S.mrc
    12074 (#50) coordinates: 
    12075 Matrix rotation and translation 
    12076 0.99995216 -0.00830957 -0.00515952 3.11792540 
    12077 0.00827176 0.99993909 -0.00730734 -0.19952646 
    12078 0.00521993 0.00726431 0.99995999 -3.11566445 
    12079 Axis 0.59737632 -0.42551375 0.67976436 
    12080 Axis point 35.74099618 387.26843499 0.00000000 
    12081 Rotation angle (degrees) 0.69881820 
    12082 Shift along axis -0.17044159 
    12083  
    12084 Fit map MultiPostProcessor_PPout_4.mrc in map Stable_60S.mrc using 59877
    12085 points 
    12086 correlation = 0.8022, correlation about mean = 0.3083, overlap = 2.557e+04 
    12087 steps = 80, shift = 0.0678, angle = 0.0206 degrees 
    12088  
    12089 Position of MultiPostProcessor_PPout_4.mrc (#3) relative to Stable_60S.mrc
    12090 (#50) coordinates: 
    12091 Matrix rotation and translation 
    12092 0.99999347 -0.00056959 0.00356852 -1.62356182 
    12093 0.00058106 0.99999467 -0.00321407 0.37901028 
    12094 -0.00356667 0.00321613 0.99998847 -2.00390261 
    12095 Axis 0.66470224 0.73757905 0.11894566 
    12096 Axis point -528.06741878 0.00000000 260.65659024 
    12097 Rotation angle (degrees) 0.27713522 
    12098 Shift along axis -1.03799067 
    12099  
    12100 Fit map MultiPostProcessor_PPout_5.mrc in map Stable_60S.mrc using 59232
    12101 points 
    12102 correlation = 0.7949, correlation about mean = 0.3444, overlap = 2.973e+04 
    12103 steps = 48, shift = 0.0725, angle = 0.0055 degrees 
    12104  
    12105 Position of MultiPostProcessor_PPout_5.mrc (#4) relative to Stable_60S.mrc
    12106 (#50) coordinates: 
    12107 Matrix rotation and translation 
    12108 0.99996286 -0.00461161 0.00728096 -0.51123150 
    12109 0.00455843 0.99996293 0.00730449 -2.33296897 
    12110 -0.00731438 -0.00727103 0.99994681 3.11807221 
    12111 Axis -0.64569384 0.64657195 0.40623168 
    12112 Axis point 420.91878956 0.00000000 64.52893459 
    12113 Rotation angle (degrees) 0.64669460 
    12114 Shift along axis 0.08832642 
    12115  
    12116 Fit map MultiPostProcessor_PPout_6.mrc in map Stable_60S.mrc using 63888
    12117 points 
    12118 correlation = 0.7961, correlation about mean = 0.3852, overlap = 3.228e+04 
    12119 steps = 136, shift = 0.044, angle = 0.0411 degrees 
    12120  
    12121 Position of MultiPostProcessor_PPout_6.mrc (#5) relative to Stable_60S.mrc
    12122 (#50) coordinates: 
    12123 Matrix rotation and translation 
    12124 0.99998304 -0.00555169 -0.00175997 1.66698372 
    12125 0.00554863 0.99998309 -0.00174134 -0.79097248 
    12126 0.00176960 0.00173155 0.99999694 -1.00123439 
    12127 Axis 0.28572448 -0.29038792 0.91325592 
    12128 Axis point 154.40556504 310.51951823 0.00000000 
    12129 Rotation angle (degrees) 0.34820770 
    12130 Shift along axis -0.20839632 
    12131  
    12132 Fit map MultiPostProcessor_PPout_8.mrc in map Stable_60S.mrc using 60436
    12133 points 
    12134 correlation = 0.8012, correlation about mean = 0.366, overlap = 2.864e+04 
    12135 steps = 116, shift = 0.00626, angle = 0.0226 degrees 
    12136  
    12137 Position of MultiPostProcessor_PPout_8.mrc (#6) relative to Stable_60S.mrc
    12138 (#50) coordinates: 
    12139 Matrix rotation and translation 
    12140 0.99994835 -0.00684295 -0.00751427 3.03854961 
    12141 0.00677078 0.99993111 -0.00958843 0.55698488 
    12142 0.00757937 0.00953705 0.99992580 -4.49296038 
    12143 Axis 0.68526973 -0.54080825 0.48778256 
    12144 Axis point 0.00000000 450.35255951 31.69567556 
    12145 Rotation angle (degrees) 0.79957195 
    12146 Shift along axis -0.41058369 
    12147  
    12148 Fit map MultiPostProcessor_PPout_10.mrc in map Stable_60S.mrc using 59509
    12149 points 
    12150 correlation = 0.7961, correlation about mean = 0.3516, overlap = 2.961e+04 
    12151 steps = 48, shift = 0.0691, angle = 0.0366 degrees 
    12152  
    12153 Position of MultiPostProcessor_PPout_10.mrc (#7) relative to Stable_60S.mrc
    12154 (#50) coordinates: 
    12155 Matrix rotation and translation 
    12156 0.99988875 0.01353316 0.00627287 -4.81161824 
    12157 -0.01353012 0.99990832 -0.00052693 3.03578769 
    12158 -0.00627942 0.00044200 0.99998019 0.93789419 
    12159 Axis 0.03246164 0.42053636 -0.90669477 
    12160 Axis point 213.55266833 357.94621771 0.00000000 
    12161 Rotation angle (degrees) 0.85512209 
    12162 Shift along axis 0.27008234 
    12163  
    12164 Fit map MultiPostProcessor_PPout_1.mrc in map Stable_60S.mrc using 66804
    12165 points 
    12166 correlation = 0.7951, correlation about mean = 0.3069, overlap = 2.904e+04 
    12167 steps = 76, shift = 1.93, angle = 0.932 degrees 
    12168  
    12169 Position of MultiPostProcessor_PPout_1.mrc (#8) relative to Stable_60S.mrc
    12170 (#50) coordinates: 
    12171 Matrix rotation and translation 
    12172 0.99996069 -0.00883156 0.00078819 1.03071097 
    12173 0.00884149 0.99986787 -0.01364083 1.58158215 
    12174 -0.00066762 0.01364727 0.99990665 -4.78177885 
    12175 Axis 0.83850468 0.04473395 0.54305504 
    12176 Axis point 0.00000000 285.06991180 118.63299268 
    12177 Rotation angle (degrees) 0.93235131 
    12178 Shift along axis -1.66176272 
    12179  
    12180 Fit map MultiPostProcessor_PPout_2.mrc in map Stable_60S.mrc using 62077
    12181 points 
    12182 correlation = 0.791, correlation about mean = 0.2657, overlap = 2.758e+04 
    12183 steps = 84, shift = 1.46, angle = 1.12 degrees 
    12184  
    12185 Position of MultiPostProcessor_PPout_2.mrc (#9) relative to Stable_60S.mrc
    12186 (#50) coordinates: 
    12187 Matrix rotation and translation 
    12188 0.99991876 -0.00785846 -0.01003594 3.20150229 
    12189 0.00770891 0.99985996 -0.01485404 1.51864833 
    12190 0.01015126 0.01477546 0.99983931 -6.81126959 
    12191 Axis 0.75804480 -0.51647172 0.39827761 
    12192 Axis point 0.00000000 432.79952830 60.94586255 
    12193 Rotation angle (degrees) 1.11982388 
    12194 Shift along axis -1.07023292 
    12195  
    12196 Fit map MultiPostProcessor_PPout_3.mrc in map Stable_60S.mrc using 60821
    12197 points 
    12198 correlation = 0.7944, correlation about mean = 0.3445, overlap = 2.933e+04 
    12199 steps = 64, shift = 0.608, angle = 1.13 degrees 
    12200  
    12201 Position of MultiPostProcessor_PPout_3.mrc (#10) relative to Stable_60S.mrc
    12202 (#50) coordinates: 
    12203 Matrix rotation and translation 
    12204 0.99988940 -0.00885711 -0.01194710 4.62621771 
    12205 0.00870083 0.99987673 -0.01306975 0.87103265 
    12206 0.01206138 0.01296435 0.99984321 -6.17270861 
    12207 Axis 0.65862428 -0.60737904 0.44419001 
    12208 Axis point 0.00000000 469.08244460 51.81269293 
    12209 Rotation angle (degrees) 1.13246748 
    12210 Shift along axis -0.22396315 
    12211  
    12212 Fit map MultiPostProcessor_PPout_4.mrc in map Stable_60S.mrc using 60145
    12213 points 
    12214 correlation = 0.7937, correlation about mean = 0.2541, overlap = 2.537e+04 
    12215 steps = 56, shift = 7.25, angle = 2.15 degrees 
    12216  
    12217 Position of MultiPostProcessor_PPout_4.mrc (#11) relative to Stable_60S.mrc
    12218 (#50) coordinates: 
    12219 Matrix rotation and translation 
    12220 0.99987436 -0.00096549 0.01582179 -8.15441416 
    12221 0.00150250 0.99942192 -0.03396408 4.37484907 
    12222 -0.01577985 0.03398358 0.99929781 -8.54539822 
    12223 Axis 0.90623957 0.42148116 0.03291632 
    12224 Axis point 0.00000000 249.88026453 196.86866069 
    12225 Rotation angle (degrees) 2.14845329 
    12226 Shift along axis -5.82721939 
    12227  
    12228 Fit map MultiPostProcessor_PPout_5.mrc in map Stable_60S.mrc using 66523
    12229 points 
    12230 correlation = 0.7747, correlation about mean = 0.2296, overlap = 2.812e+04 
    12231 steps = 76, shift = 1.49, angle = 0.784 degrees 
    12232  
    12233 Position of MultiPostProcessor_PPout_5.mrc (#12) relative to Stable_60S.mrc
    12234 (#50) coordinates: 
    12235 Matrix rotation and translation 
    12236 0.99998582 -0.00480367 -0.00229697 0.86721561 
    12237 0.00477431 0.99990898 -0.01261903 2.07541331 
    12238 0.00235738 0.01260788 0.99991774 -4.82104454 
    12239 Axis 0.92128078 -0.16997565 0.34978565 
    12240 Axis point 0.00000000 348.92494991 145.24557039 
    12241 Rotation angle (degrees) 0.78447350 
    12242 Shift along axis -1.24015287 
    12243  
    12244 Fit map run_ct19_class001.mrc in map Stable_60S.mrc using 64019 points 
    12245 correlation = 0.8011, correlation about mean = 0.358, overlap = 3.027e+04 
    12246 steps = 60, shift = 11.4, angle = 0.525 degrees 
    12247  
    12248 Position of run_ct19_class001.mrc (#13) relative to Stable_60S.mrc (#50)
    12249 coordinates: 
    12250 Matrix rotation and translation 
    12251 0.99996051 -0.00461062 0.00759751 -7.65443076 
    12252 0.00459392 0.99998700 0.00221376 -6.18437965 
    12253 -0.00760762 -0.00217877 0.99996869 -5.41230517 
    12254 Axis -0.23991258 0.83048002 0.50273740 
    12255 Axis point -318.49414300 0.00000000 1195.95239537 
    12256 Rotation angle (degrees) 0.52451734 
    12257 Shift along axis -6.02057771 
    12258  
    12259 
    12260 > hide #!52 models
    12261 
    12262 > show #!51 models
    12263 
    12264 > show #!58 models
    12265 
    12266 > hide #!51 models
    12267 
    12268 > show #!59 models
    12269 
    12270 > hide #!58 models
    12271 
    12272 > close #13
    12273 
    12274 > hide #!59 models
    12275 
    12276 > show #!1 models
    12277 
    12278 > show #!8 models
    12279 
    12280 > show #!9 models
    12281 
    12282 > show #!10 models
    12283 
    12284 > show #!11 models
    12285 
    12286 > show #!12 models
    12287 
    12288 > close #8-12
    12289 
    12290 > hide #!1 models
    12291 
    12292 > show #!1 models
    12293 
    12294 > save
    12295 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/160_decodingE.mrc
    12296 > models #1
    12297 
    12298 [Repeated 1 time(s)]
    12299 
    12300 > rename #1 160_decodingE.mrc
    12301 
    12302 > hide #!1 models
    12303 
    12304 > show #!2 models
    12305 
    12306 > rename #2 170_hibernatingE.mrc
    12307 
    12308 > hide #!2 models
    12309 
    12310 > show #!3 models
    12311 
    12312 > rename #3 160_Post?.mrc
    12313 
    12314 > rename #2 160_hibernatingE.mrc
    12315 
    12316 > hide #!3 models
    12317 
    12318 > show #!4 models
    12319 
    12320 > rename #4 160_unpre5.mrc
    12321 
    12322 > hide #!4 models
    12323 
    12324 > show #!5 models
    12325 
    12326 > rename #5 160_hibernating5
    12327 
    12328 > rename #4 160_unr_pre5.mrc
    12329 
    12330 > hide #!5 models
    12331 
    12332 > show #!6 models
    12333 
    12334 > rename #6 160_rot
    12335 
    12336 > hide #!6 models
    12337 
    12338 > show #!7 models
    12339 
    12340 > rename #7 160_decoding5
    12341 
    12342 > save
    12343 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/subunit_colouring2.cxs
    12344 > includeMaps true
    12345 
    12346 ——— End of log from Wed Jan 15 14:45:55 2025 ———
    12347 
    12348 > view name session-start
    12349 
    12350 opened ChimeraX session 
    12351 
    12352 > open
    12353 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Decoding2_IF5/MultiPostProcessor_PPout_Decoding2_IF5.mrc
    12354 
    12355 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc as #8, grid size
    12356 128,128,128, pixel 4, shown at level 0.93, step 1, values float32 
    12357 
    12358 > open
    12359 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Hibernating_IF5/MultiPostProcessor_PPout_Hibernating_IF5.mrc
    12360 
    12361 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc as #9, grid size
    12362 128,128,128, pixel 4, shown at level 0.945, step 1, values float32 
    12363 
    12364 > open
    12365 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Post_E/MultiPostProcessor_PPout_Post_E.mrc
    12366 
    12367 Opened MultiPostProcessor_PPout_Post_E.mrc as #10, grid size 128,128,128,
    12368 pixel 4, shown at level 0.839, step 1, values float32 
    12369 
    12370 > open
    12371 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Rotated1/MultiPostProcessor_PPout_Rotated1.mrc
    12372 
    12373 Opened MultiPostProcessor_PPout_Rotated1.mrc as #11, grid size 128,128,128,
    12374 pixel 4, shown at level 0.846, step 1, values float32 
    12375 
    12376 > open
    12377 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Rotated2/MultiPostProcessor_PPout_Rotated2.mrc
    12378 
    12379 Opened MultiPostProcessor_PPout_Rotated2.mrc as #12, grid size 128,128,128,
    12380 pixel 4, shown at level 0.872, step 1, values float32 
    12381 
    12382 > open
    12383 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/Translocating_E/MultiPostProcessor_PPout_Translocating_E.mrc
    12384 
    12385 Opened MultiPostProcessor_PPout_Translocating_E.mrc as #13, grid size
    12386 128,128,128, pixel 4, shown at level 0.888, step 1, values float32 
    12387 
    12388 > open
    12389 > /Users/campbell/Desktop/workspaces/hd_tn298-Combined_202505/MultiPostProcessor/Comb25_Subclass/UnrotatedPre_cEF2_IF5/MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc
    12390 
    12391 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc as #14, grid size
    12392 128,128,128, pixel 4, shown at level 0.913, step 1, values float32 
    12393 
    12394 > close #1-7
    12395 
    12396 > volume #1-40 level 0.6
    12397 
    12398 > fitmap #1-40 inMap #50 eachModel true
    12399 
    12400 Fit map MultiPostProcessor_PPout_Decoding2_IF5.mrc in map Stable_60S.mrc using
    12401 59486 points 
    12402 correlation = 0.7898, correlation about mean = 0.3255, overlap = 2.952e+04 
    12403 steps = 64, shift = 1.68, angle = 1.28 degrees 
    12404  
    12405 Position of MultiPostProcessor_PPout_Decoding2_IF5.mrc (#8) relative to
    12406 Stable_60S.mrc (#50) coordinates: 
    12407 Matrix rotation and translation 
    12408 0.99976397 0.01860026 0.01122686 -7.81996437 
    12409 -0.01865785 0.99981319 0.00504636 4.91861513 
    12410 -0.01113090 -0.00525464 0.99992424 3.63276708 
    12411 Axis -0.23067534 0.50066776 -0.83433847 
    12412 Axis point 226.38325290 407.97261497 0.00000000 
    12413 Rotation angle (degrees) 1.27940265 
    12414 Shift along axis 1.23550762 
    12415  
    12416 Fit map MultiPostProcessor_PPout_Hibernating_IF5.mrc in map Stable_60S.mrc
    12417 using 63153 points 
    12418 correlation = 0.7951, correlation about mean = 0.3571, overlap = 3.106e+04 
    12419 steps = 56, shift = 2.13, angle = 0.404 degrees 
    12420  
    12421 Position of MultiPostProcessor_PPout_Hibernating_IF5.mrc (#9) relative to
    12422 Stable_60S.mrc (#50) coordinates: 
    12423 Matrix rotation and translation 
    12424 0.99998335 0.00399359 0.00416445 -2.88996695 
    12425 -0.00401047 0.99998375 0.00405231 1.89960466 
    12426 -0.00414820 -0.00406894 0.99998312 1.76556607 
    12427 Axis -0.57552687 0.58909134 -0.56722149 
    12428 Axis point 667.29705654 0.00000000 450.51779174 
    12429 Rotation angle (degrees) 0.40425323 
    12430 Shift along axis 1.78082725 
    12431  
    12432 Fit map MultiPostProcessor_PPout_Post_E.mrc in map Stable_60S.mrc using 60107
    12433 points 
    12434 correlation = 0.7977, correlation about mean = 0.318, overlap = 2.695e+04 
    12435 steps = 104, shift = 2, angle = 1.09 degrees 
    12436  
    12437 Position of MultiPostProcessor_PPout_Post_E.mrc (#10) relative to
    12438 Stable_60S.mrc (#50) coordinates: 
    12439 Matrix rotation and translation 
    12440 0.99982744 0.01371127 0.01253378 -7.21702630 
    12441 -0.01375872 0.99989847 0.00370712 4.05104519 
    12442 -0.01248168 -0.00387893 0.99991458 3.11397695 
    12443 Axis -0.20005445 0.65969141 -0.72442078 
    12444 Axis point 201.53103384 501.74928587 0.00000000 
    12445 Rotation angle (degrees) 1.08639112 
    12446 Shift along axis 1.86040835 
    12447  
    12448 Fit map MultiPostProcessor_PPout_Rotated1.mrc in map Stable_60S.mrc using
    12449 56561 points 
    12450 correlation = 0.8025, correlation about mean = 0.3245, overlap = 2.656e+04 
    12451 steps = 84, shift = 2.21, angle = 0.299 degrees 
    12452  
    12453 Position of MultiPostProcessor_PPout_Rotated1.mrc (#11) relative to
    12454 Stable_60S.mrc (#50) coordinates: 
    12455 Matrix rotation and translation 
    12456 0.99999877 0.00066264 -0.00141870 -1.10491254 
    12457 -0.00066971 0.99998736 -0.00498347 3.14612435 
    12458 0.00141538 0.00498441 0.99998658 -1.97454050 
    12459 Axis 0.95402431 -0.27124992 -0.12751899 
    12460 Axis point 0.00000000 439.95627731 540.07575665 
    12461 Rotation angle (degrees) 0.29932172 
    12462 Shift along axis -1.65570799 
    12463  
    12464 Fit map MultiPostProcessor_PPout_Rotated2.mrc in map Stable_60S.mrc using
    12465 55876 points 
    12466 correlation = 0.7965, correlation about mean = 0.3517, overlap = 2.697e+04 
    12467 steps = 52, shift = 2.02, angle = 0.557 degrees 
    12468  
    12469 Position of MultiPostProcessor_PPout_Rotated2.mrc (#12) relative to
    12470 Stable_60S.mrc (#50) coordinates: 
    12471 Matrix rotation and translation 
    12472 0.99997820 0.00283253 -0.00596421 -0.55492718 
    12473 -0.00287500 0.99997049 -0.00712463 3.98347982 
    12474 0.00594385 0.00714162 0.99995683 -3.24244224 
    12475 Axis 0.73387023 -0.61256256 -0.29360107 
    12476 Axis point 0.00000000 534.32330989 393.93820254 
    12477 Rotation angle (degrees) 0.55691667 
    12478 Shift along axis -1.89539064 
    12479  
    12480 Fit map MultiPostProcessor_PPout_Translocating_E.mrc in map Stable_60S.mrc
    12481 using 58868 points 
    12482 correlation = 0.7979, correlation about mean = 0.3674, overlap = 2.84e+04 
    12483 steps = 80, shift = 1.98, angle = 0.696 degrees 
    12484  
    12485 Position of MultiPostProcessor_PPout_Translocating_E.mrc (#13) relative to
    12486 Stable_60S.mrc (#50) coordinates: 
    12487 Matrix rotation and translation 
    12488 0.99993288 0.01035511 0.00519701 -4.62869601 
    12489 -0.01037408 0.99993958 0.00363590 3.43941422 
    12490 -0.00515905 -0.00368957 0.99997989 1.98852097 
    12491 Axis -0.30142925 0.42613230 -0.85296640 
    12492 Axis point 281.27959097 414.91524566 0.00000000 
    12493 Rotation angle (degrees) 0.69623142 
    12494 Shift along axis 1.16472830 
    12495  
    12496 Fit map MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc in map
    12497 Stable_60S.mrc using 58278 points 
    12498 correlation = 0.7868, correlation about mean = 0.3156, overlap = 2.842e+04 
    12499 steps = 64, shift = 2.56, angle = 0.963 degrees 
    12500  
    12501 Position of MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc (#14) relative
    12502 to Stable_60S.mrc (#50) coordinates: 
    12503 Matrix rotation and translation 
    12504 0.99992656 0.00215832 0.01192513 -4.02215773 
    12505 -0.00229700 0.99992976 0.01162790 0.14047040 
    12506 -0.01189920 -0.01165443 0.99986128 5.37646741 
    12507 Axis -0.69275610 0.70888307 -0.13256612 
    12508 Axis point 473.55149272 0.00000000 213.95372323 
    12509 Rotation angle (degrees) 0.96285115 
    12510 Shift along axis 2.17321395 
    12511  
    12512 
    12513 > hide #!9 models
    12514 
    12515 > hide #!10 models
    12516 
    12517 > hide #!11 models
    12518 
    12519 > hide #!12 models
    12520 
    12521 > hide #!13 models
    12522 
    12523 > hide #!14 models
    12524 
    12525 > show #!52 models
    12526 
    12527 > show #!58 models
    12528 
    12529 > hide #!8 models
    12530 
    12531 > hide #!52 models
    12532 
    12533 > show #!52 models
    12534 
    12535 > hide #!52 models
    12536 
    12537 > show #!52 models
    12538 
    12539 Drag select of 17673 residues, 11 pseudobonds 
    12540 
    12541 > select subtract #52/3
    12542 
    12543 214107 atoms, 11 pseudobonds, 17598 residues, 3 models selected 
    12544 
    12545 > ui tool show "Color Zone"
    12546 
    12547 > show #!8 models
    12548 
    12549 > show #!53 models
    12550 
    12551 > hide #!58 models
    12552 
    12553 > hide #!52 models
    12554 
    12555 > hide #!8 models
    12556 
    12557 Drag select of 364 residues 
    12558 
    12559 > show #!52 models
    12560 
    12561 > hide #!52 models
    12562 
    12563 > show #!58 models
    12564 
    12565 > show #!8 models
    12566 
    12567 > color zone #50 near sel distance 24
    12568 
    12569 > color zone #8 near sel distance 24
    12570 
    12571 > hide #!53 models
    12572 
    12573 > hide #!58 models
    12574 
    12575 > hide #!8 models
    12576 
    12577 > show #!9 models
    12578 
    12579 > show #!8 models
    12580 
    12581 > hide #!9 models
    12582 
    12583 > surface dust #8 size 40
    12584 
    12585 > hide #!8 models
    12586 
    12587 > show #!9 models
    12588 
    12589 > show #!61 models
    12590 
    12591 > select clear
    12592 
    12593 > hide #!9 models
    12594 
    12595 > select add #61
    12596 
    12597 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    12598 selected 
    12599 
    12600 > show sel cartoons
    12601 
    12602 > undo
    12603 
    12604 Drag select of 16942 residues, 28 pseudobonds 
    12605 
    12606 > show #!51 models
    12607 
    12608 > hide #!51 models
    12609 
    12610 > show #!53 models
    12611 
    12612 > hide #!61 models
    12613 
    12614 Drag select of 364 residues 
    12615 
    12616 > show #!61 models
    12617 
    12618 > show #!9 models
    12619 
    12620 > color zone #9 near sel distance 24
    12621 
    12622 > select clear
    12623 
    12624 > hide #!53 models
    12625 
    12626 > hide #!61 models
    12627 
    12628 > show #!61 models
    12629 
    12630 > show #!53 models
    12631 
    12632 > hide #!9 models
    12633 
    12634 > hide #!53 models
    12635 
    12636 Drag select of 16942 residues, 28 pseudobonds 
    12637 
    12638 > show #!60 models
    12639 
    12640 > hide #!60 models
    12641 
    12642 > show #!53 models
    12643 
    12644 > hide #!61 models
    12645 
    12646 Drag select of 364 residues 
    12647 
    12648 > color zone #9 near sel distance 30
    12649 
    12650 [Repeated 1 time(s)]
    12651 
    12652 > show #!9 models
    12653 
    12654 > hide #!9 models
    12655 
    12656 > show #!10 models
    12657 
    12658 > hide #!53 models
    12659 
    12660 > show #!58 models
    12661 
    12662 > show #!51 models
    12663 
    12664 > hide #!51 models
    12665 
    12666 > show #!52 models
    12667 
    12668 > select clear
    12669 
    12670 > select add #58
    12671 
    12672 209136 atoms, 224719 bonds, 4513 pseudobonds, 17082 residues, 3 models
    12673 selected 
    12674 
    12675 > select add #52/3:44
    12676 
    12677 209159 atoms, 224744 bonds, 4513 pseudobonds, 17083 residues, 4 models
    12678 selected 
    12679 
    12680 > select up
    12681 
    12682 210729 atoms, 226498 bonds, 4513 pseudobonds, 17157 residues, 4 models
    12683 selected 
    12684 
    12685 > color zone #10 near sel distance 24
    12686 
    12687 > hide #!58 models
    12688 
    12689 > show #!58 models
    12690 
    12691 > hide #!52 models
    12692 
    12693 > show #!52 models
    12694 
    12695 > hide #!58 models
    12696 
    12697 > show #!58 models
    12698 
    12699 > select subtract #58
    12700 
    12701 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    12702 
    12703 > hide #!52 models
    12704 
    12705 > hide #!10 models
    12706 
    12707 Drag select of 17005 residues, 11 pseudobonds 
    12708 
    12709 > show #!52 models
    12710 
    12711 > hide #!52 models
    12712 
    12713 > show #!52 models
    12714 
    12715 > hide #!58 models
    12716 
    12717 > select add #52/3:52
    12718 
    12719 207515 atoms, 25 bonds, 11 pseudobonds, 17006 residues, 3 models selected 
    12720 
    12721 > select up
    12722 
    12723 209085 atoms, 1779 bonds, 11 pseudobonds, 17080 residues, 3 models selected 
    12724 
    12725 > select add #52/2:19
    12726 
    12727 209108 atoms, 1804 bonds, 11 pseudobonds, 17081 residues, 3 models selected 
    12728 
    12729 > select up
    12730 
    12731 210701 atoms, 3585 bonds, 11 pseudobonds, 17156 residues, 3 models selected 
    12732 
    12733 > show #!10 models
    12734 
    12735 > color zone #10 near sel distance 24
    12736 
    12737 > hide #!10 models
    12738 
    12739 > show #!11 models
    12740 
    12741 > hide #!52 models
    12742 
    12743 > select clear
    12744 
    12745 > show #!51 models
    12746 
    12747 > hide #!11 models
    12748 
    12749 > select #51/33:50
    12750 
    12751 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12752 
    12753 > select add #51/q3:20
    12754 
    12755 40 atoms, 42 bonds, 2 residues, 1 model selected 
    12756 
    12757 > select up
    12758 
    12759 3183 atoms, 3560 bonds, 149 residues, 1 model selected 
    12760 
    12761 > show #!11 models
    12762 
    12763 > hide #!11 models
    12764 
    12765 > show #!59 models
    12766 
    12767 > hide #!51 models
    12768 
    12769 Drag select of 17064 residues, 12 pseudobonds 
    12770 
    12771 > show #!51 models
    12772 
    12773 > hide #!59 models
    12774 
    12775 > select subtract #51/51
    12776 
    12777 210934 atoms, 3560 bonds, 12 pseudobonds, 17213 residues, 3 models selected 
    12778 
    12779 > select subtract #51/33
    12780 
    12781 209330 atoms, 1765 bonds, 12 pseudobonds, 17138 residues, 3 models selected 
    12782 
    12783 > show #!59 models
    12784 
    12785 > hide #!51 models
    12786 
    12787 > show #!10 models
    12788 
    12789 > hide #!10 models
    12790 
    12791 > show #!11 models
    12792 
    12793 > show #!51 models
    12794 
    12795 > color zone #10 near sel distance 24
    12796 
    12797 > color zone #11 near sel distance 24
    12798 
    12799 > hide #!11 models
    12800 
    12801 > show #!12 models
    12802 
    12803 > show #!61 models
    12804 
    12805 > select add #61/eEF2:796
    12806 
    12807 209338 atoms, 1772 bonds, 12 pseudobonds, 17139 residues, 4 models selected 
    12808 
    12809 > select up
    12810 
    12811 209421 atoms, 1861 bonds, 12 pseudobonds, 17148 residues, 4 models selected 
    12812 
    12813 > select up
    12814 
    12815 215899 atoms, 8460 bonds, 12 pseudobonds, 17980 residues, 4 models selected 
    12816 
    12817 > color zone #12 near sel distance 24
    12818 
    12819 > hide #!12 models
    12820 
    12821 > show #!13 models
    12822 
    12823 > hide #!59 models
    12824 
    12825 > hide #!51 models
    12826 
    12827 > hide #!13 models
    12828 
    12829 > show #!13 models
    12830 
    12831 > hide #!13 models
    12832 
    12833 Drag select of 16942 residues, 28 pseudobonds 
    12834 
    12835 > show #!52 models
    12836 
    12837 > hide #!61 models
    12838 
    12839 Drag select of 146 residues 
    12840 
    12841 > select up
    12842 
    12843 206456 atoms, 3585 bonds, 28 pseudobonds, 17093 residues, 3 models selected 
    12844 
    12845 > show #!61 models
    12846 
    12847 > show #!14 models
    12848 
    12849 > show #!13 models
    12850 
    12851 > hide #!14 models
    12852 
    12853 > color zone #13 near sel distance 24
    12854 
    12855 > hide #!13 models
    12856 
    12857 > show #!14 models
    12858 
    12859 > select clear
    12860 
    12861 > hide #!14 models
    12862 
    12863 > hide #!52 models
    12864 
    12865 > show #!14 models
    12866 
    12867 > hide #!61 models
    12868 
    12869 > show #!58 models
    12870 
    12871 > show #!53 models
    12872 
    12873 > hide #!14 models
    12874 
    12875 > show #!60 models
    12876 
    12877 > hide #!60 models
    12878 
    12879 > show #!61 models
    12880 
    12881 > hide #!61 models
    12882 
    12883 Drag select of 17445 residues, 11 pseudobonds 
    12884 
    12885 > show #!61 models
    12886 
    12887 > select add #61/eEF2:361
    12888 
    12889 211301 atoms, 4 bonds, 11 pseudobonds, 17446 residues, 4 models selected 
    12890 
    12891 > select up
    12892 
    12893 211329 atoms, 33 bonds, 11 pseudobonds, 17450 residues, 4 models selected 
    12894 
    12895 > select up
    12896 
    12897 217865 atoms, 6695 bonds, 11 pseudobonds, 18287 residues, 4 models selected 
    12898 
    12899 > show #!14 models
    12900 
    12901 > color zone #14 near sel distance 24
    12902 
    12903 > hide #!53 models
    12904 
    12905 > hide #!58 models
    12906 
    12907 > hide #!14 models
    12908 
    12909 Drag select of 3285 residues, 10 pseudobonds 
    12910 
    12911 > select up
    12912 
    12913 125995 atoms, 138789 bonds, 10 pseudobonds, 7648 residues, 2 models selected 
    12914 
    12915 > select down
    12916 
    12917 37886 atoms, 10 pseudobonds, 3285 residues, 2 models selected 
    12918 Drag select of 3357 residues, 9 pseudobonds 
    12919 
    12920 > select (sel & #61/eEF2
    12921 
    12922 Expected an objects specifier or a keyword 
    12923 
    12924 > select (sel & #61/eEF2)
    12925 
    12926 4956 atoms, 5045 bonds, 639 residues, 1 model selected 
    12927 
    12928 > hide #!61 models
    12929 
    12930 > show #!58 models
    12931 
    12932 > show #!53 models
    12933 
    12934 Drag select of 17445 residues, 11 pseudobonds 
    12935 
    12936 > show #!14 models
    12937 
    12938 > color zone #14 near sel distance 24
    12939 
    12940 > color zone #14 near sel distance 12
    12941 
    12942 > select clear
    12943 
    12944 > save
    12945 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/202508_subunitcolouring.cxs
    12946 
    12947 > hide #!53 models
    12948 
    12949 > hide #!58 models
    12950 
    12951 > save
    12952 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/202508_subunitcolouring.cxs
    12953 > includeMaps true
    12954 
    12955 No atoms selected for color zoning 
    12956 
    12957 [Repeated 1 time(s)]
    12958 
    12959 > hide #!14 models
    12960 
    12961 > show #!61 models
    12962 
    12963 Drag select of 3190 residues, 9 pseudobonds 
    12964 
    12965 > select (sel & #61/eEF2)
    12966 
    12967 4971 atoms, 5058 bonds, 641 residues, 1 model selected 
    12968 
    12969 > hide #!61 models
    12970 
    12971 > show #!53 models
    12972 
    12973 Drag select of 377 residues 
    12974 Drag select of 29 residues 
    12975 Drag select of 74 residues 
    12976 
    12977 > select subtract #53/m
    12978 
    12979 7164 atoms, 5058 bonds, 1005 residues, 2 models selected 
    12980 
    12981 > show #!58 models
    12982 
    12983 > hide #!53 models
    12984 
    12985 > show #!53 models
    12986 
    12987 > hide #!58 models
    12988 
    12989 Drag select of 69 residues 
    12990 Drag select of 76 residues 
    12991 
    12992 > select add #53/m
    12993 
    12994 8775 atoms, 6857 bonds, 68 pseudobonds, 1081 residues, 3 models selected 
    12995 
    12996 > hide #!53 models
    12997 
    12998 > show #!58 models
    12999 
    13000 Drag select of 17005 residues, 11 pseudobonds 
    13001 
    13002 > color zone #14 near sel distance 24
    13003 
    13004 > show #!14 models
    13005 
    13006 > hide #!58 models
    13007 
    13008 > save
    13009 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/202508_subunitcolouring.cxs
    13010 > includeMaps true
    13011 
    13012 ——— End of log from Tue Aug 12 16:26:11 2025 ———
    13013 
    13014 > view name session-start
    13015 
    13016 opened ChimeraX session 
    13017 
    13018 > show #!61 models
    13019 
    13020 > show #!53 models
    13021 
    13022 > hide #!53 models
    13023 
    13024 > show #!53 models
    13025 
    13026 > show #!58 models
    13027 
    13028 > ui tool show "Color Zone"
    13029 
    13030 > color zone #14 near #58 distance 4
    13031 
    13032 > color zone #14 near sel distance 24
    13033 
    13034 > select clear
    13035 
    13036 > hide #!58 models
    13037 
    13038 > hide #!53 models
    13039 
    13040 > hide #!14 models
    13041 
    13042 > show #!14 models
    13043 
    13044 > hide #!61 models
    13045 
    13046 > hide #!14 models
    13047 
    13048 > show #!13 models
    13049 
    13050 > hide #!13 models
    13051 
    13052 > show #!13 models
    13053 
    13054 > hide #!13 models
    13055 
    13056 > show #!12 models
    13057 
    13058 > show #!8 models
    13059 
    13060 > show #!9 models
    13061 
    13062 > show #!10 models
    13063 
    13064 > show #!11 models
    13065 
    13066 > show #!13 models
    13067 
    13068 > show #!14 models
    13069 
    13070 > surface dust #8 size 40
    13071 
    13072 > surface dust #9 size 40
    13073 
    13074 > surface dust #10 size 40
    13075 
    13076 > surface dust #11 size 40
    13077 
    13078 > surface dust #12 size 40
    13079 
    13080 > surface dust #13 size 40
    13081 
    13082 > surface dust #14 size 40
    13083 
    13084 > hide #!9 models
    13085 
    13086 > hide #!10 models
    13087 
    13088 > hide #!12 models
    13089 
    13090 > hide #!13 models
    13091 
    13092 > hide #!14 models
    13093 
    13094 > hide #!11 models
    13095 
    13096 > volume level 0.7
    13097 
    13098 > volume splitbyzone #8
    13099 
    13100 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 0 as #1.1, grid size
    13101 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13102 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 1 as #1.2, grid size
    13103 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13104 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 2 as #1.3, grid size
    13105 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13106 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 3 as #1.4, grid size
    13107 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13108 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 4 as #1.5, grid size
    13109 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13110 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 5 as #1.6, grid size
    13111 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13112 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 6 as #1.7, grid size
    13113 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13114 
    13115 > volume #1.2 level 0.708
    13116 
    13117 > volume #1.7 level 0.5358
    13118 
    13119 > volume #1.7 level 0.5985
    13120 
    13121 > lighting soft
    13122 
    13123 > lighting full
    13124 
    13125 > lighting simple
    13126 
    13127 > lighting soft
    13128 
    13129 > graphics silhouettes false
    13130 
    13131 > lighting simple
    13132 
    13133 > lighting full
    13134 
    13135 > hide #!1 models
    13136 
    13137 > show #!1 models
    13138 
    13139 > lighting soft
    13140 
    13141 > volume #1.7 color #911db4
    13142 
    13143 > volume #1.7 color #cd29ff
    13144 
    13145 > volume #1.7 color #b500ff
    13146 
    13147 > volume #1.7 color #9437ff
    13148 
    13149 > volume #1.7 color #ff40ff
    13150 
    13151 > volume #1.7 color #d783ff
    13152 
    13153 > volume #1.7 color #9437ff
    13154 
    13155 > graphics silhouettes true
    13156 
    13157 > graphics silhouettes false
    13158 
    13159 > graphics silhouettes true
    13160 
    13161 > graphics silhouettes false
    13162 
    13163 > graphics silhouettes true
    13164 
    13165 > save /Users/campbell/Desktop/image5.png supersample 3
    13166 
    13167 > hide #!1 models
    13168 
    13169 > show #!9 models
    13170 
    13171 > show #!8 models
    13172 
    13173 > hide #!8 models
    13174 
    13175 > volume splitbyzone #9
    13176 
    13177 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 0 as #2.1, grid size
    13178 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13179 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 1 as #2.2, grid size
    13180 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13181 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 2 as #2.3, grid size
    13182 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13183 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 3 as #2.4, grid size
    13184 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13185 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 4 as #2.5, grid size
    13186 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13187 
    13188 > volume #1.7 level 0.5132
    13189 
    13190 > volume #2.5 level 0.599
    13191 
    13192 > lighting simple
    13193 
    13194 > lighting full
    13195 
    13196 > show #!1 models
    13197 
    13198 > hide #!1 models
    13199 
    13200 > show #!1 models
    13201 
    13202 > hide #!1 models
    13203 
    13204 > volume #2.5 color #9437ff
    13205 
    13206 > show #!1 models
    13207 
    13208 > hide #!2 models
    13209 
    13210 > hide #!1 models
    13211 
    13212 > show #!1 models
    13213 
    13214 > show #!2 models
    13215 
    13216 > hide #!1 models
    13217 
    13218 > hide #!2 models
    13219 
    13220 > show #!8 models
    13221 
    13222 > volume splitbyzone #8
    13223 
    13224 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 0 as #3.1, grid size
    13225 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13226 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 1 as #3.2, grid size
    13227 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13228 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 2 as #3.3, grid size
    13229 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13230 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 3 as #3.4, grid size
    13231 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13232 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 4 as #3.5, grid size
    13233 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13234 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 5 as #3.6, grid size
    13235 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13236 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 6 as #3.7, grid size
    13237 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13238 
    13239 > hide #!3 models
    13240 
    13241 > show #!9 models
    13242 
    13243 > volume splitbyzone #9
    13244 
    13245 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 0 as #4.1, grid size
    13246 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13247 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 1 as #4.2, grid size
    13248 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13249 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 2 as #4.3, grid size
    13250 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13251 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 3 as #4.4, grid size
    13252 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13253 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 4 as #4.5, grid size
    13254 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13255 
    13256 > close #4
    13257 
    13258 > show #!3 models
    13259 
    13260 > show #!1 models
    13261 
    13262 > hide #!1 models
    13263 
    13264 > close #3
    13265 
    13266 > show #!1 models
    13267 
    13268 > show #!2 models
    13269 
    13270 > hide #!2 models
    13271 
    13272 > show #!10 models
    13273 
    13274 > hide #!1 models
    13275 
    13276 > show #!58 models
    13277 
    13278 > show #!52 models
    13279 
    13280 > hide #!58 models
    13281 
    13282 > show #!58 models
    13283 
    13284 > hide #!10 models
    13285 
    13286 Drag select of 17673 residues, 11 pseudobonds 
    13287 
    13288 > select subtract #52/jj
    13289 
    13290 212317 atoms, 11 pseudobonds, 17232 residues, 3 models selected 
    13291 
    13292 > select subtract #52/ii
    13293 
    13294 210701 atoms, 11 pseudobonds, 17156 residues, 3 models selected 
    13295 
    13296 > show #!10 models
    13297 
    13298 > color zone #10 near sel distance 24
    13299 
    13300 > volume splitbyzone #10
    13301 
    13302 Opened MultiPostProcessor_PPout_Post_E.mrc 0 as #3.1, grid size 128,128,128,
    13303 pixel 4, shown at level 0.7, step 1, values float32 
    13304 Opened MultiPostProcessor_PPout_Post_E.mrc 1 as #3.2, grid size 128,128,128,
    13305 pixel 4, shown at level 0.7, step 1, values float32 
    13306 Opened MultiPostProcessor_PPout_Post_E.mrc 2 as #3.3, grid size 128,128,128,
    13307 pixel 4, shown at level 0.7, step 1, values float32 
    13308 Opened MultiPostProcessor_PPout_Post_E.mrc 3 as #3.4, grid size 128,128,128,
    13309 pixel 4, shown at level 0.7, step 1, values float32 
    13310 Opened MultiPostProcessor_PPout_Post_E.mrc 4 as #3.5, grid size 128,128,128,
    13311 pixel 4, shown at level 0.7, step 1, values float32 
    13312 
    13313 > hide #!3 models
    13314 
    13315 > show #!11 models
    13316 
    13317 > select clear
    13318 
    13319 > hide #!52 models
    13320 
    13321 > hide #!58 models
    13322 
    13323 > volume splitbyzone #10
    13324 
    13325 Opened MultiPostProcessor_PPout_Post_E.mrc 0 as #4.1, grid size 128,128,128,
    13326 pixel 4, shown at level 0.7, step 1, values float32 
    13327 Opened MultiPostProcessor_PPout_Post_E.mrc 1 as #4.2, grid size 128,128,128,
    13328 pixel 4, shown at level 0.7, step 1, values float32 
    13329 Opened MultiPostProcessor_PPout_Post_E.mrc 2 as #4.3, grid size 128,128,128,
    13330 pixel 4, shown at level 0.7, step 1, values float32 
    13331 Opened MultiPostProcessor_PPout_Post_E.mrc 3 as #4.4, grid size 128,128,128,
    13332 pixel 4, shown at level 0.7, step 1, values float32 
    13333 Opened MultiPostProcessor_PPout_Post_E.mrc 4 as #4.5, grid size 128,128,128,
    13334 pixel 4, shown at level 0.7, step 1, values float32 
    13335 
    13336 > hide #!11 models
    13337 
    13338 > show #!12 models
    13339 
    13340 > volume splitbyzone #10
    13341 
    13342 Opened MultiPostProcessor_PPout_Post_E.mrc 0 as #5.1, grid size 128,128,128,
    13343 pixel 4, shown at level 0.7, step 1, values float32 
    13344 Opened MultiPostProcessor_PPout_Post_E.mrc 1 as #5.2, grid size 128,128,128,
    13345 pixel 4, shown at level 0.7, step 1, values float32 
    13346 Opened MultiPostProcessor_PPout_Post_E.mrc 2 as #5.3, grid size 128,128,128,
    13347 pixel 4, shown at level 0.7, step 1, values float32 
    13348 Opened MultiPostProcessor_PPout_Post_E.mrc 3 as #5.4, grid size 128,128,128,
    13349 pixel 4, shown at level 0.7, step 1, values float32 
    13350 Opened MultiPostProcessor_PPout_Post_E.mrc 4 as #5.5, grid size 128,128,128,
    13351 pixel 4, shown at level 0.7, step 1, values float32 
    13352 
    13353 > close #5
    13354 
    13355 > hide #!4 models
    13356 
    13357 > volume splitbyzone #12
    13358 
    13359 Opened MultiPostProcessor_PPout_Rotated2.mrc 0 as #5.1, grid size 128,128,128,
    13360 pixel 4, shown at level 0.7, step 1, values float32 
    13361 Opened MultiPostProcessor_PPout_Rotated2.mrc 1 as #5.2, grid size 128,128,128,
    13362 pixel 4, shown at level 0.7, step 1, values float32 
    13363 Opened MultiPostProcessor_PPout_Rotated2.mrc 2 as #5.3, grid size 128,128,128,
    13364 pixel 4, shown at level 0.7, step 1, values float32 
    13365 Opened MultiPostProcessor_PPout_Rotated2.mrc 3 as #5.4, grid size 128,128,128,
    13366 pixel 4, shown at level 0.7, step 1, values float32 
    13367 Opened MultiPostProcessor_PPout_Rotated2.mrc 4 as #5.5, grid size 128,128,128,
    13368 pixel 4, shown at level 0.7, step 1, values float32 
    13369 Opened MultiPostProcessor_PPout_Rotated2.mrc 5 as #5.6, grid size 128,128,128,
    13370 pixel 4, shown at level 0.7, step 1, values float32 
    13371 
    13372 > show #!13 models
    13373 
    13374 > hide #!5 models
    13375 
    13376 > volume splitbyzone #13
    13377 
    13378 Opened MultiPostProcessor_PPout_Translocating_E.mrc 0 as #6.1, grid size
    13379 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13380 Opened MultiPostProcessor_PPout_Translocating_E.mrc 1 as #6.2, grid size
    13381 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13382 Opened MultiPostProcessor_PPout_Translocating_E.mrc 2 as #6.3, grid size
    13383 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13384 Opened MultiPostProcessor_PPout_Translocating_E.mrc 3 as #6.4, grid size
    13385 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13386 Opened MultiPostProcessor_PPout_Translocating_E.mrc 4 as #6.5, grid size
    13387 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13388 Opened MultiPostProcessor_PPout_Translocating_E.mrc 5 as #6.6, grid size
    13389 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13390 
    13391 > show #!14 models
    13392 
    13393 > hide #!6 models
    13394 
    13395 > volume splitbyzone #14
    13396 
    13397 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 0 as #7.1, grid size
    13398 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13399 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 1 as #7.2, grid size
    13400 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13401 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 2 as #7.3, grid size
    13402 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13403 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 3 as #7.4, grid size
    13404 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13405 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 4 as #7.5, grid size
    13406 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13407 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 5 as #7.6, grid size
    13408 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13409 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 6 as #7.7, grid size
    13410 128,128,128, pixel 4, shown at level 0.7, step 1, values float32 
    13411 
    13412 > save
    13413 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/202508_subunitcolouring.cxs
    13414 > includeMaps true
    13415 
    13416 > lighting soft
    13417 
    13418 > lighting simple
    13419 
    13420 > lighting full
    13421 
    13422 > hide #!7 models
    13423 
    13424 > show #!1 models
    13425 
    13426 > surface dust #1.2 size 40
    13427 
    13428 > surface dust #1.3 size 40
    13429 
    13430 > surface dust #1.4 size 40
    13431 
    13432 > surface dust #1.5 size 40
    13433 
    13434 > surface dust #1.6 size 40
    13435 
    13436 > surface dust #1.7 size 40
    13437 
    13438 > volume #1.7 color #d783ff
    13439 
    13440 > volume #1.7 color #ff40ff
    13441 
    13442 > volume #1.6 color #7a81ff
    13443 
    13444 > volume #1.6 color #d783ff
    13445 
    13446 > volume #1.6 color #9437ff
    13447 
    13448 > volume #1.6 level 0.6143
    13449 
    13450 > volume #1.7 level 0.527
    13451 
    13452 > save /Users/campbell/Desktop/image3.png supersample 3
    13453 
    13454 > hide #!1 models
    13455 
    13456 > show #!2 models
    13457 
    13458 > volume #2.4 level 0.6049
    13459 
    13460 > volume #2.5 color #d783ff
    13461 
    13462 > show #!1 models
    13463 
    13464 > hide #!1 models
    13465 
    13466 > show #!1 models
    13467 
    13468 > volume #2.5 color #ff85ff
    13469 
    13470 > volume #2.5 color #ff40ff
    13471 
    13472 > hide #!1 models
    13473 
    13474 > save /Users/campbell/Desktop/image4.png supersample 3
    13475 
    13476 > hide #!2 models
    13477 
    13478 > show #!3 models
    13479 
    13480 > close #4
    13481 
    13482 > show #!11 models
    13483 
    13484 > hide #!3 models
    13485 
    13486 > volume splitbyzone #11
    13487 
    13488 Opened MultiPostProcessor_PPout_Rotated1.mrc 0 as #4.1, grid size 128,128,128,
    13489 pixel 4, shown at level 0.7, step 1, values float32 
    13490 Opened MultiPostProcessor_PPout_Rotated1.mrc 1 as #4.2, grid size 128,128,128,
    13491 pixel 4, shown at level 0.7, step 1, values float32 
    13492 Opened MultiPostProcessor_PPout_Rotated1.mrc 2 as #4.3, grid size 128,128,128,
    13493 pixel 4, shown at level 0.7, step 1, values float32 
    13494 Opened MultiPostProcessor_PPout_Rotated1.mrc 3 as #4.4, grid size 128,128,128,
    13495 pixel 4, shown at level 0.7, step 1, values float32 
    13496 Opened MultiPostProcessor_PPout_Rotated1.mrc 4 as #4.5, grid size 128,128,128,
    13497 pixel 4, shown at level 0.7, step 1, values float32 
    13498 
    13499 > volume #4.2 level 0.5996
    13500 
    13501 > volume #4.3 level 0.5785
    13502 
    13503 > surface dust #4.1 size 40
    13504 
    13505 > surface dust #4.2 size 40
    13506 
    13507 > surface dust #4.3 size 40
    13508 
    13509 > surface dust #4.4 size 40
    13510 
    13511 > surface dust #4.5 size 40
    13512 
    13513 > show #!3 models
    13514 
    13515 > hide #!4 models
    13516 
    13517 > volume #3.5 level 0.5994
    13518 
    13519 > volume #3.2 level 0.6083
    13520 
    13521 > hide #!3 models
    13522 
    13523 > show #!2 models
    13524 
    13525 > hide #!2 models
    13526 
    13527 > show #!1 models
    13528 
    13529 > hide #!1 models
    13530 
    13531 > show #!2 models
    13532 
    13533 > hide #!2 models
    13534 
    13535 > show #!3 models
    13536 
    13537 > hide #!3 models
    13538 
    13539 > show #!4 models
    13540 
    13541 > hide #!4 models
    13542 
    13543 > show #!6 models
    13544 
    13545 > show #!5 models
    13546 
    13547 > hide #!6 models
    13548 
    13549 > volume #5.2 level 0.6098
    13550 
    13551 > volume #5.3 level 0.6438
    13552 
    13553 > volume #5.5 level 0.6067
    13554 
    13555 > hide #!5 models
    13556 
    13557 > show #!6 models
    13558 
    13559 > volume #6.4 level 0.6049
    13560 
    13561 > volume #6.2 level 0.6319
    13562 
    13563 > volume #6.5 level 0.6156
    13564 
    13565 > hide #!6 models
    13566 
    13567 > show #!7 models
    13568 
    13569 > volume #7.7 color #ff40ff
    13570 
    13571 > volume #7.7 level 0.6201
    13572 
    13573 > volume #7.5 level 0.5693
    13574 
    13575 > volume #7.4 level 0.6601
    13576 
    13577 > show #!6 models
    13578 
    13579 > hide #!7 models
    13580 
    13581 > hide #!6 models
    13582 
    13583 > show #!1 models
    13584 
    13585 > save /Users/campbell/Desktop/image3.png supersample 3
    13586 
    13587 > hide #!1 models
    13588 
    13589 > show #!2 models
    13590 
    13591 > save /Users/campbell/Desktop/image4.png supersample 3
    13592 
    13593 > hide #!2 models
    13594 
    13595 > show #!3 models
    13596 
    13597 > save /Users/campbell/Desktop/image5.png supersample 3
    13598 
    13599 > hide #!3 models
    13600 
    13601 > show #!4 models
    13602 
    13603 > save /Users/campbell/Desktop/image6.png supersample 3
    13604 
    13605 > hide #!4 models
    13606 
    13607 > show #!5 models
    13608 
    13609 > save /Users/campbell/Desktop/image7.png supersample 3
    13610 
    13611 > hide #!5 models
    13612 
    13613 > show #!6 models
    13614 
    13615 > save /Users/campbell/Desktop/image8.png supersample 3
    13616 
    13617 > hide #!6 models
    13618 
    13619 > show #!7 models
    13620 
    13621 > save /Users/campbell/Desktop/image9.png supersample 3
    13622 
    13623 > save
    13624 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/202508_subunitcolouring.cxs
    13625 > includeMaps true
    13626 
    13627 ——— End of log from Tue Aug 12 16:48:18 2025 ———
    13628 
    13629 > view name session-start
    13630 
    13631 opened ChimeraX session 
    13632 
    13633 > show #!50 models
    13634 
    13635 > hide #!50 models
    13636 
    13637 > show #!53 models
    13638 
    13639 > hide #!7 models
    13640 
    13641 > show #!58 models
    13642 
    13643 > hide #!53 models
    13644 
    13645 > hide #!58 models
    13646 
    13647 > close #1-14
    13648 
    13649 > open
    13650 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding1_E/MultiPostProcessor_PPout_Decoding1_E.mrc
    13651 
    13652 Opened MultiPostProcessor_PPout_Decoding1_E.mrc as #1, grid size 128,128,128,
    13653 pixel 4, shown at level 0.882, step 1, values float32 
    13654 
    13655 > open
    13656 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding1_IF5/MultiPostProcessor_PPout_Decoding1_IF5.mrc
    13657 
    13658 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc as #2, grid size
    13659 128,128,128, pixel 4, shown at level 0.903, step 1, values float32 
    13660 
    13661 > open
    13662 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding1_open/MultiPostProcessor_PPout_Decoding1_open.mrc
    13663 
    13664 Opened MultiPostProcessor_PPout_Decoding1_open.mrc as #3, grid size
    13665 128,128,128, pixel 4, shown at level 0.907, step 1, values float32 
    13666 
    13667 > open
    13668 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding2_E/MultiPostProcessor_PPout_Decoding2_E.mrc
    13669 
    13670 Opened MultiPostProcessor_PPout_Decoding2_E.mrc as #4, grid size 128,128,128,
    13671 pixel 4, shown at level 0.904, step 1, values float32 
    13672 
    13673 > open
    13674 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding2_IF5/MultiPostProcessor_PPout_Decoding2_IF5.mrc
    13675 
    13676 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc as #5, grid size
    13677 128,128,128, pixel 4, shown at level 0.93, step 1, values float32 
    13678 
    13679 > open
    13680 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Decoding2_open/MultiPostProcessor_PPout_Decoding2_open.mrc
    13681 
    13682 Opened MultiPostProcessor_PPout_Decoding2_open.mrc as #6, grid size
    13683 128,128,128, pixel 4, shown at level 0.929, step 1, values float32 
    13684 
    13685 > open
    13686 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Hibernating_E/MultiPostProcessor_PPout_Hibernating_E.mrc
    13687 
    13688 Opened MultiPostProcessor_PPout_Hibernating_E.mrc as #7, grid size
    13689 128,128,128, pixel 4, shown at level 0.922, step 1, values float32 
    13690 
    13691 > open
    13692 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Hibernating_IF5/MultiPostProcessor_PPout_Hibernating_IF5.mrc
    13693 
    13694 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc as #8, grid size
    13695 128,128,128, pixel 4, shown at level 0.945, step 1, values float32 
    13696 
    13697 > open
    13698 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Hibernating_open/MultiPostProcessor_PPout_Hibernating_open.mrc
    13699 
    13700 Opened MultiPostProcessor_PPout_Hibernating_open.mrc as #9, grid size
    13701 128,128,128, pixel 4, shown at level 0.871, step 1, values float32 
    13702 
    13703 > open
    13704 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Post_E/MultiPostProcessor_PPout_Post_E.mrc
    13705 
    13706 Opened MultiPostProcessor_PPout_Post_E.mrc as #10, grid size 128,128,128,
    13707 pixel 4, shown at level 0.839, step 1, values float32 
    13708 
    13709 > open
    13710 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Post_IF5/MultiPostProcessor_PPout_Post_IF5.mrc
    13711 
    13712 Opened MultiPostProcessor_PPout_Post_IF5.mrc as #11, grid size 128,128,128,
    13713 pixel 4, shown at level 0.861, step 1, values float32 
    13714 
    13715 > open
    13716 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Post_open/MultiPostProcessor_PPout_Post_open.mrc
    13717 
    13718 Opened MultiPostProcessor_PPout_Post_open.mrc as #12, grid size 128,128,128,
    13719 pixel 4, shown at level 0.856, step 1, values float32 
    13720 
    13721 > open
    13722 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Rotated1/MultiPostProcessor_PPout_Rotated1.mrc
    13723 
    13724 Opened MultiPostProcessor_PPout_Rotated1.mrc as #13, grid size 128,128,128,
    13725 pixel 4, shown at level 0.846, step 1, values float32 
    13726 
    13727 > open
    13728 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Rotated2/MultiPostProcessor_PPout_Rotated2.mrc
    13729 
    13730 Opened MultiPostProcessor_PPout_Rotated2.mrc as #14, grid size 128,128,128,
    13731 pixel 4, shown at level 0.872, step 1, values float32 
    13732 
    13733 > open
    13734 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Translocating_E/MultiPostProcessor_PPout_Translocating_E.mrc
    13735 
    13736 Opened MultiPostProcessor_PPout_Translocating_E.mrc as #15, grid size
    13737 128,128,128, pixel 4, shown at level 0.888, step 1, values float32 
    13738 
    13739 > open
    13740 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Translocating_IF5/MultiPostProcessor_PPout_Translocating_IF5.mrc
    13741 
    13742 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc as #16, grid size
    13743 128,128,128, pixel 4, shown at level 0.87, step 1, values float32 
    13744 
    13745 > open
    13746 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/Translocating_open/MultiPostProcessor_PPout_Translocating_open.mrc
    13747 
    13748 Opened MultiPostProcessor_PPout_Translocating_open.mrc as #17, grid size
    13749 128,128,128, pixel 4, shown at level 0.879, step 1, values float32 
    13750 
    13751 > open
    13752 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/UnrotatedPre_cEF2_IF5/MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc
    13753 
    13754 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc as #18, grid size
    13755 128,128,128, pixel 4, shown at level 0.913, step 1, values float32 
    13756 
    13757 > open
    13758 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/Comb25_Subclass/UnrotatedPre_none_IF5/MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc
    13759 
    13760 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc as #19, grid size
    13761 128,128,128, pixel 4, shown at level 0.899, step 1, values float32 
    13762 
    13763 > volume #1-49 level 0.65
    13764 
    13765 > hide #!2 models
    13766 
    13767 > hide #!3 models
    13768 
    13769 > hide #!4 models
    13770 
    13771 > hide #!5 models
    13772 
    13773 > hide #!6 models
    13774 
    13775 > hide #!7 models
    13776 
    13777 > hide #!8 models
    13778 
    13779 > hide #!9 models
    13780 
    13781 > hide #!10 models
    13782 
    13783 > hide #!11 models
    13784 
    13785 > hide #!12 models
    13786 
    13787 > hide #!13 models
    13788 
    13789 > hide #!14 models
    13790 
    13791 > hide #!15 models
    13792 
    13793 > hide #!16 models
    13794 
    13795 > hide #!17 models
    13796 
    13797 > hide #!18 models
    13798 
    13799 > hide #!19 models
    13800 
    13801 > show #!4 models
    13802 
    13803 > hide #!1 models
    13804 
    13805 > volume #1-49 level 0.6
    13806 
    13807 > show #!1 models
    13808 
    13809 > hide #!4 models
    13810 
    13811 > show #!4 models
    13812 
    13813 > hide #!1 models
    13814 
    13815 > show #!1 models
    13816 
    13817 > hide #!4 models
    13818 
    13819 > show #!4 models
    13820 
    13821 > lighting soft
    13822 
    13823 > hide #!1 models
    13824 
    13825 > show #!1 models
    13826 
    13827 > hide #!4 models
    13828 
    13829 > show #!4 models
    13830 
    13831 > hide #!1 models
    13832 
    13833 > hide #!4 models
    13834 
    13835 > show #!2 models
    13836 
    13837 > lighting simple
    13838 
    13839 > show #!5 models
    13840 
    13841 > hide #!2 models
    13842 
    13843 > show #!1 models
    13844 
    13845 > show #!6 models
    13846 
    13847 > hide #!5 models
    13848 
    13849 > hide #!1 models
    13850 
    13851 > show #!3 models
    13852 
    13853 > hide #!6 models
    13854 
    13855 > volume #3 level 0.237
    13856 
    13857 > volume #3 level 0.6
    13858 
    13859 > hide #!3 models
    13860 
    13861 > show #!5 models
    13862 
    13863 > fitmap #1-49 inMap #50 eachModel true
    13864 
    13865 Fit map MultiPostProcessor_PPout_Decoding1_E.mrc in map Stable_60S.mrc using
    13866 59402 points 
    13867 correlation = 0.7911, correlation about mean = 0.327, overlap = 2.791e+04 
    13868 steps = 88, shift = 1.87, angle = 1.28 degrees 
    13869  
    13870 Position of MultiPostProcessor_PPout_Decoding1_E.mrc (#1) relative to
    13871 Stable_60S.mrc (#50) coordinates: 
    13872 Matrix rotation and translation 
    13873 0.99976874 0.01805251 0.01168621 -7.96458213 
    13874 -0.01812410 0.99981745 0.00604905 4.56676329 
    13875 -0.01157488 -0.00625945 0.99991342 3.68282798 
    13876 Axis -0.27513543 0.51996175 -0.80866574 
    13877 Axis point 202.19610879 419.58198075 0.00000000 
    13878 Rotation angle (degrees) 1.28170368 
    13879 Shift along axis 1.58770413 
    13880  
    13881 Fit map MultiPostProcessor_PPout_Decoding1_IF5.mrc in map Stable_60S.mrc using
    13882 59281 points 
    13883 correlation = 0.7914, correlation about mean = 0.3231, overlap = 2.868e+04 
    13884 steps = 64, shift = 1.74, angle = 1.3 degrees 
    13885  
    13886 Position of MultiPostProcessor_PPout_Decoding1_IF5.mrc (#2) relative to
    13887 Stable_60S.mrc (#50) coordinates: 
    13888 Matrix rotation and translation 
    13889 0.99976169 0.01831848 0.01187391 -8.04472940 
    13890 -0.01838834 0.99981409 0.00580117 4.59637574 
    13891 -0.01176544 -0.00601813 0.99991267 3.75422902 
    13892 Axis -0.26130589 0.52262812 -0.81152885 
    13893 Axis point 204.27550108 421.02370601 0.00000000 
    13894 Rotation angle (degrees) 1.29590266 
    13895 Shift along axis 1.45766526 
    13896  
    13897 Fit map MultiPostProcessor_PPout_Decoding1_open.mrc in map Stable_60S.mrc
    13898 using 63787 points 
    13899 correlation = 0.7918, correlation about mean = 0.3197, overlap = 2.976e+04 
    13900 steps = 76, shift = 2.02, angle = 1.33 degrees 
    13901  
    13902 Position of MultiPostProcessor_PPout_Decoding1_open.mrc (#3) relative to
    13903 Stable_60S.mrc (#50) coordinates: 
    13904 Matrix rotation and translation 
    13905 0.99974821 0.01902926 0.01189116 -8.30287687 
    13906 -0.01909710 0.99980185 0.00561799 4.96489118 
    13907 -0.01178190 -0.00584366 0.99991352 3.40070465 
    13908 Axis -0.24745292 0.51109301 -0.82313485 
    13909 Axis point 207.68564282 415.75565299 0.00000000 
    13910 Rotation angle (degrees) 1.32704564 
    13911 Shift along axis 1.79285377 
    13912  
    13913 Fit map MultiPostProcessor_PPout_Decoding2_E.mrc in map Stable_60S.mrc using
    13914 59129 points 
    13915 correlation = 0.7912, correlation about mean = 0.3363, overlap = 2.869e+04 
    13916 steps = 64, shift = 1.73, angle = 1.25 degrees 
    13917  
    13918 Position of MultiPostProcessor_PPout_Decoding2_E.mrc (#4) relative to
    13919 Stable_60S.mrc (#50) coordinates: 
    13920 Matrix rotation and translation 
    13921 0.99977714 0.01788998 0.01120805 -7.66665206 
    13922 -0.01795003 0.99982494 0.00528084 4.71552034 
    13923 -0.01111161 -0.00548085 0.99992324 3.65246377 
    13924 Axis -0.24698854 0.51225214 -0.82255359 
    13925 Axis point 221.43702062 413.28954814 0.00000000 
    13926 Rotation angle (degrees) 1.24833428 
    13927 Shift along axis 1.30476338 
    13928  
    13929 Fit map MultiPostProcessor_PPout_Decoding2_IF5.mrc in map Stable_60S.mrc using
    13930 59486 points 
    13931 correlation = 0.7898, correlation about mean = 0.3255, overlap = 2.952e+04 
    13932 steps = 64, shift = 1.68, angle = 1.28 degrees 
    13933  
    13934 Position of MultiPostProcessor_PPout_Decoding2_IF5.mrc (#5) relative to
    13935 Stable_60S.mrc (#50) coordinates: 
    13936 Matrix rotation and translation 
    13937 0.99976397 0.01860026 0.01122686 -7.81996437 
    13938 -0.01865785 0.99981319 0.00504636 4.91861513 
    13939 -0.01113090 -0.00525464 0.99992424 3.63276708 
    13940 Axis -0.23067534 0.50066776 -0.83433847 
    13941 Axis point 226.38325290 407.97261497 0.00000000 
    13942 Rotation angle (degrees) 1.27940265 
    13943 Shift along axis 1.23550762 
    13944  
    13945 Fit map MultiPostProcessor_PPout_Decoding2_open.mrc in map Stable_60S.mrc
    13946 using 63326 points 
    13947 correlation = 0.7903, correlation about mean = 0.3304, overlap = 3.035e+04 
    13948 steps = 52, shift = 1.77, angle = 1.34 degrees 
    13949  
    13950 Position of MultiPostProcessor_PPout_Decoding2_open.mrc (#6) relative to
    13951 Stable_60S.mrc (#50) coordinates: 
    13952 Matrix rotation and translation 
    13953 0.99974213 0.01949630 0.01164297 -8.09518726 
    13954 -0.01955682 0.99979570 0.00510701 5.20545430 
    13955 -0.01154103 -0.00533340 0.99991918 3.64105673 
    13956 Axis -0.22403863 0.49750082 -0.83803319 
    13957 Axis point 227.57030898 402.68989381 -0.00000000 
    13958 Rotation angle (degrees) 1.33513908 
    13959 Shift along axis 1.35202601 
    13960  
    13961 Fit map MultiPostProcessor_PPout_Hibernating_E.mrc in map Stable_60S.mrc using
    13962 62275 points 
    13963 correlation = 0.7964, correlation about mean = 0.3603, overlap = 3.011e+04 
    13964 steps = 52, shift = 2, angle = 0.212 degrees 
    13965  
    13966 Position of MultiPostProcessor_PPout_Hibernating_E.mrc (#7) relative to
    13967 Stable_60S.mrc (#50) coordinates: 
    13968 Matrix rotation and translation 
    13969 0.99999321 0.00326153 0.00171439 -2.21888443 
    13970 -0.00326114 0.99999466 -0.00023095 2.56192559 
    13971 -0.00171513 0.00022535 0.99999850 0.02699344 
    13972 Axis 0.06180080 0.46448828 -0.88342023 
    13973 Axis point 637.87925896 701.14479383 0.00000000 
    13974 Rotation angle (degrees) 0.21152040 
    13975 Shift along axis 1.02900904 
    13976  
    13977 Fit map MultiPostProcessor_PPout_Hibernating_IF5.mrc in map Stable_60S.mrc
    13978 using 63153 points 
    13979 correlation = 0.7951, correlation about mean = 0.3571, overlap = 3.106e+04 
    13980 steps = 56, shift = 2.13, angle = 0.404 degrees 
    13981  
    13982 Position of MultiPostProcessor_PPout_Hibernating_IF5.mrc (#8) relative to
    13983 Stable_60S.mrc (#50) coordinates: 
    13984 Matrix rotation and translation 
    13985 0.99998335 0.00399359 0.00416445 -2.88996695 
    13986 -0.00401047 0.99998375 0.00405231 1.89960466 
    13987 -0.00414820 -0.00406894 0.99998312 1.76556607 
    13988 Axis -0.57552687 0.58909134 -0.56722149 
    13989 Axis point 667.29705654 0.00000000 450.51779174 
    13990 Rotation angle (degrees) 0.40425323 
    13991 Shift along axis 1.78082725 
    13992  
    13993 Fit map MultiPostProcessor_PPout_Hibernating_open.mrc in map Stable_60S.mrc
    13994 using 60547 points 
    13995 correlation = 0.8152, correlation about mean = 0.3987, overlap = 2.89e+04 
    13996 steps = 72, shift = 2.15, angle = 0.463 degrees 
    13997  
    13998 Position of MultiPostProcessor_PPout_Hibernating_open.mrc (#9) relative to
    13999 Stable_60S.mrc (#50) coordinates: 
    14000 Matrix rotation and translation 
    14001 0.99997363 0.00591366 0.00421433 -3.47155336 
    14002 -0.00592859 0.99997616 0.00354043 2.40622389 
    14003 -0.00419329 -0.00356532 0.99998485 1.33190491 
    14004 Axis -0.43948266 0.52000174 -0.73242965 
    14005 Axis point 246.03840628 454.26301712 0.00000000 
    14006 Rotation angle (degrees) 0.46319695 
    14007 Shift along axis 1.80140146 
    14008  
    14009 Fit map MultiPostProcessor_PPout_Post_E.mrc in map Stable_60S.mrc using 60107
    14010 points 
    14011 correlation = 0.7977, correlation about mean = 0.318, overlap = 2.695e+04 
    14012 steps = 104, shift = 2, angle = 1.09 degrees 
    14013  
    14014 Position of MultiPostProcessor_PPout_Post_E.mrc (#10) relative to
    14015 Stable_60S.mrc (#50) coordinates: 
    14016 Matrix rotation and translation 
    14017 0.99982744 0.01371127 0.01253378 -7.21702630 
    14018 -0.01375872 0.99989847 0.00370712 4.05104519 
    14019 -0.01248168 -0.00387893 0.99991458 3.11397695 
    14020 Axis -0.20005445 0.65969141 -0.72442078 
    14021 Axis point 201.53103384 501.74928587 0.00000000 
    14022 Rotation angle (degrees) 1.08639112 
    14023 Shift along axis 1.86040835 
    14024  
    14025 Fit map MultiPostProcessor_PPout_Post_IF5.mrc in map Stable_60S.mrc using
    14026 60639 points 
    14027 correlation = 0.7956, correlation about mean = 0.3097, overlap = 2.773e+04 
    14028 steps = 68, shift = 1.86, angle = 1.1 degrees 
    14029  
    14030 Position of MultiPostProcessor_PPout_Post_IF5.mrc (#11) relative to
    14031 Stable_60S.mrc (#50) coordinates: 
    14032 Matrix rotation and translation 
    14033 0.99982585 0.01439549 0.01187585 -7.13509603 
    14034 -0.01444969 0.99988551 0.00449092 3.98676733 
    14035 -0.01180984 -0.00466174 0.99991939 3.30610554 
    14036 Axis -0.23816755 0.61634108 -0.75059968 
    14037 Axis point 200.73424655 470.36423178 0.00000000 
    14038 Rotation angle (degrees) 1.10099234 
    14039 Shift along axis 1.67499509 
    14040  
    14041 Fit map MultiPostProcessor_PPout_Post_open.mrc in map Stable_60S.mrc using
    14042 62418 points 
    14043 correlation = 0.795, correlation about mean = 0.2943, overlap = 2.778e+04 
    14044 steps = 72, shift = 2.43, angle = 0.991 degrees 
    14045  
    14046 Position of MultiPostProcessor_PPout_Post_open.mrc (#12) relative to
    14047 Stable_60S.mrc (#50) coordinates: 
    14048 Matrix rotation and translation 
    14049 0.99986233 0.01100900 0.01241434 -6.59251481 
    14050 -0.01106976 0.99992703 0.00483637 3.41572075 
    14051 -0.01236019 -0.00497312 0.99991124 3.01347904 
    14052 Axis -0.28347400 0.71593260 -0.63803057 
    14053 Axis point 363.80595606 0.00000000 480.46532160 
    14054 Rotation angle (degrees) 0.99139688 
    14055 Shift along axis 2.39154063 
    14056  
    14057 Fit map MultiPostProcessor_PPout_Rotated1.mrc in map Stable_60S.mrc using
    14058 56561 points 
    14059 correlation = 0.8025, correlation about mean = 0.3245, overlap = 2.656e+04 
    14060 steps = 84, shift = 2.21, angle = 0.299 degrees 
    14061  
    14062 Position of MultiPostProcessor_PPout_Rotated1.mrc (#13) relative to
    14063 Stable_60S.mrc (#50) coordinates: 
    14064 Matrix rotation and translation 
    14065 0.99999877 0.00066264 -0.00141870 -1.10491254 
    14066 -0.00066971 0.99998736 -0.00498347 3.14612435 
    14067 0.00141538 0.00498441 0.99998658 -1.97454050 
    14068 Axis 0.95402431 -0.27124992 -0.12751899 
    14069 Axis point 0.00000000 439.95627731 540.07575665 
    14070 Rotation angle (degrees) 0.29932172 
    14071 Shift along axis -1.65570799 
    14072  
    14073 Fit map MultiPostProcessor_PPout_Rotated2.mrc in map Stable_60S.mrc using
    14074 55876 points 
    14075 correlation = 0.7965, correlation about mean = 0.3517, overlap = 2.697e+04 
    14076 steps = 52, shift = 2.02, angle = 0.557 degrees 
    14077  
    14078 Position of MultiPostProcessor_PPout_Rotated2.mrc (#14) relative to
    14079 Stable_60S.mrc (#50) coordinates: 
    14080 Matrix rotation and translation 
    14081 0.99997820 0.00283253 -0.00596421 -0.55492718 
    14082 -0.00287500 0.99997049 -0.00712463 3.98347982 
    14083 0.00594385 0.00714162 0.99995683 -3.24244224 
    14084 Axis 0.73387023 -0.61256256 -0.29360107 
    14085 Axis point 0.00000000 534.32330989 393.93820254 
    14086 Rotation angle (degrees) 0.55691667 
    14087 Shift along axis -1.89539064 
    14088  
    14089 Fit map MultiPostProcessor_PPout_Translocating_E.mrc in map Stable_60S.mrc
    14090 using 58868 points 
    14091 correlation = 0.7979, correlation about mean = 0.3674, overlap = 2.84e+04 
    14092 steps = 80, shift = 1.98, angle = 0.696 degrees 
    14093  
    14094 Position of MultiPostProcessor_PPout_Translocating_E.mrc (#15) relative to
    14095 Stable_60S.mrc (#50) coordinates: 
    14096 Matrix rotation and translation 
    14097 0.99993288 0.01035511 0.00519701 -4.62869601 
    14098 -0.01037408 0.99993958 0.00363590 3.43941422 
    14099 -0.00515905 -0.00368957 0.99997989 1.98852097 
    14100 Axis -0.30142925 0.42613230 -0.85296640 
    14101 Axis point 281.27959097 414.91524566 0.00000000 
    14102 Rotation angle (degrees) 0.69623142 
    14103 Shift along axis 1.16472830 
    14104  
    14105 Fit map MultiPostProcessor_PPout_Translocating_IF5.mrc in map Stable_60S.mrc
    14106 using 63215 points 
    14107 correlation = 0.802, correlation about mean = 0.3522, overlap = 2.898e+04 
    14108 steps = 88, shift = 2, angle = 0.765 degrees 
    14109  
    14110 Position of MultiPostProcessor_PPout_Translocating_IF5.mrc (#16) relative to
    14111 Stable_60S.mrc (#50) coordinates: 
    14112 Matrix rotation and translation 
    14113 0.99991795 0.01004081 0.00795429 -5.32499458 
    14114 -0.01007051 0.99994244 0.00370276 3.30361218 
    14115 -0.00791665 -0.00378256 0.99996151 2.56435892 
    14116 Axis -0.28044864 0.59462919 -0.75350162 
    14117 Axis point 235.16990017 489.64640778 0.00000000 
    14118 Rotation angle (degrees) 0.76464884 
    14119 Shift along axis 1.52556309 
    14120  
    14121 Fit map MultiPostProcessor_PPout_Translocating_open.mrc in map Stable_60S.mrc
    14122 using 64454 points 
    14123 correlation = 0.7986, correlation about mean = 0.3522, overlap = 2.929e+04 
    14124 steps = 56, shift = 2.12, angle = 0.529 degrees 
    14125  
    14126 Position of MultiPostProcessor_PPout_Translocating_open.mrc (#17) relative to
    14127 Stable_60S.mrc (#50) coordinates: 
    14128 Matrix rotation and translation 
    14129 0.99996290 0.00783096 0.00358791 -3.71300564 
    14130 -0.00784276 0.99996384 0.00328730 3.00234171 
    14131 -0.00356203 -0.00331532 0.99998816 1.38036757 
    14132 Axis -0.35787617 0.38754248 -0.84955016 
    14133 Axis point 315.69331386 415.33223041 0.00000000 
    14134 Rotation angle (degrees) 0.52854493 
    14135 Shift along axis 1.31963970 
    14136  
    14137 Fit map MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc in map
    14138 Stable_60S.mrc using 58278 points 
    14139 correlation = 0.7868, correlation about mean = 0.3156, overlap = 2.842e+04 
    14140 steps = 64, shift = 2.56, angle = 0.963 degrees 
    14141  
    14142 Position of MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc (#18) relative
    14143 to Stable_60S.mrc (#50) coordinates: 
    14144 Matrix rotation and translation 
    14145 0.99992656 0.00215832 0.01192513 -4.02215773 
    14146 -0.00229700 0.99992976 0.01162790 0.14047040 
    14147 -0.01189920 -0.01165443 0.99986128 5.37646741 
    14148 Axis -0.69275610 0.70888307 -0.13256612 
    14149 Axis point 473.55149272 0.00000000 213.95372323 
    14150 Rotation angle (degrees) 0.96285115 
    14151 Shift along axis 2.17321395 
    14152  
    14153 Fit map MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc in map
    14154 Stable_60S.mrc using 57953 points 
    14155 correlation = 0.793, correlation about mean = 0.3182, overlap = 2.823e+04 
    14156 steps = 120, shift = 2.23, angle = 0.887 degrees 
    14157  
    14158 Position of MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc (#19) relative
    14159 to Stable_60S.mrc (#50) coordinates: 
    14160 Matrix rotation and translation 
    14161 0.99991650 0.00685207 0.01095655 -5.03219678 
    14162 -0.00694507 0.99993999 0.00847293 1.68244680 
    14163 -0.01089783 -0.00854832 0.99990408 4.29067316 
    14164 Axis -0.55001840 0.70619421 -0.44583573 
    14165 Axis point 474.12641037 0.00000000 360.34159610 
    14166 Rotation angle (degrees) 0.88659304 
    14167 Shift along axis 2.04299963 
    14168  
    14169 
    14170 > show #!1 models
    14171 
    14172 > hide #!1 models
    14173 
    14174 > show #!1 models
    14175 
    14176 > hide #!1 models
    14177 
    14178 > show #!1 models
    14179 
    14180 > hide #!1 models
    14181 
    14182 > hide #!5 models
    14183 
    14184 > show #!1 models
    14185 
    14186 > ui tool show "Color Zone"
    14187 
    14188 > show #!58 models
    14189 
    14190 > hide #!1 models
    14191 
    14192 > show #!1 models
    14193 
    14194 > show #!52 models
    14195 
    14196 > select add #52
    14197 
    14198 220934 atoms, 236952 bonds, 5887 pseudobonds, 18186 residues, 4 models
    14199 selected 
    14200 
    14201 > select add #58
    14202 
    14203 430070 atoms, 461671 bonds, 10400 pseudobonds, 35268 residues, 7 models
    14204 selected 
    14205 
    14206 > color zone #1 near sel distance 30
    14207 
    14208 > hide #!1 models
    14209 
    14210 Drag select of 17673 residues, 11 pseudobonds 
    14211 
    14212 > show #!1 models
    14213 
    14214 > color zone #1 near sel distance 30
    14215 
    14216 > volume splitbyzone #1
    14217 
    14218 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 0 as #20.1, grid size
    14219 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14220 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 1 as #20.2, grid size
    14221 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14222 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 2 as #20.3, grid size
    14223 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14224 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 3 as #20.4, grid size
    14225 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14226 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 4 as #20.5, grid size
    14227 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14228 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 5 as #20.6, grid size
    14229 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14230 Opened MultiPostProcessor_PPout_Decoding1_E.mrc 6 as #20.7, grid size
    14231 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14232 
    14233 > hide #!20 models
    14234 
    14235 > show #!2 models
    14236 
    14237 > show #!53 models
    14238 
    14239 > select subtract #52/G
    14240 
    14241 215700 atoms, 11 pseudobonds, 17673 residues, 3 models selected 
    14242 
    14243 > hide #!2 models
    14244 
    14245 > lighting soft
    14246 
    14247 Drag select of 18075 residues, 10 pseudobonds 
    14248 
    14249 > hide #!52 models
    14250 
    14251 > hide #!58 models
    14252 
    14253 > hide #!53 models
    14254 
    14255 > select clear
    14256 
    14257 > show #!58 models
    14258 
    14259 > show #!52 models
    14260 
    14261 > show #!53 models
    14262 
    14263 Drag select of 18113 residues, 11 pseudobonds 
    14264 
    14265 > select subtract #53/m
    14266 
    14267 217893 atoms, 11 pseudobonds, 18037 residues, 4 models selected 
    14268 Drag select of 18113 residues, 11 pseudobonds 
    14269 
    14270 > select #53/m:47
    14271 
    14272 20 atoms, 21 bonds, 1 residue, 1 model selected 
    14273 
    14274 > select up
    14275 
    14276 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    14277 Drag select of 18113 residues, 11 pseudobonds 
    14278 
    14279 > select subtract #53/m
    14280 
    14281 217893 atoms, 11 pseudobonds, 18037 residues, 4 models selected 
    14282 
    14283 > hide #!53 models
    14284 
    14285 > show #!53 models
    14286 
    14287 > hide #!53 models
    14288 
    14289 > show #!53 models
    14290 
    14291 > select subtract #52/3
    14292 
    14293 216300 atoms, 11 pseudobonds, 17962 residues, 4 models selected 
    14294 
    14295 > show #!2 models
    14296 
    14297 > color zone #2 near sel distance 24
    14298 
    14299 > volume splitbyzone #2
    14300 
    14301 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 0 as #21.1, grid size
    14302 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14303 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 1 as #21.2, grid size
    14304 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14305 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 2 as #21.3, grid size
    14306 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14307 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 3 as #21.4, grid size
    14308 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14309 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 4 as #21.5, grid size
    14310 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14311 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 5 as #21.6, grid size
    14312 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14313 Opened MultiPostProcessor_PPout_Decoding1_IF5.mrc 6 as #21.7, grid size
    14314 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14315 
    14316 > hide #!21 models
    14317 
    14318 > show #!3 models
    14319 
    14320 > hide #!3 models
    14321 
    14322 > select subtract #53/eI
    14323 
    14324 215157 atoms, 11 pseudobonds, 17808 residues, 4 models selected 
    14325 
    14326 > show #!3 models
    14327 
    14328 > color zone #3 near sel distance 30
    14329 
    14330 > volume splitbyzone #3
    14331 
    14332 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 0 as #22.1, grid size
    14333 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14334 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 1 as #22.2, grid size
    14335 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14336 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 2 as #22.3, grid size
    14337 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14338 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 3 as #22.4, grid size
    14339 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14340 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 4 as #22.5, grid size
    14341 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14342 Opened MultiPostProcessor_PPout_Decoding1_open.mrc 5 as #22.6, grid size
    14343 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14344 
    14345 > hide #!21.1 models
    14346 
    14347 > show #!4 models
    14348 
    14349 > select add #53
    14350 
    14351 419069 atoms, 220182 bonds, 5241 pseudobonds, 34496 residues, 7 models
    14352 selected 
    14353 
    14354 > select subtract #53
    14355 
    14356 214107 atoms, 11 pseudobonds, 17598 residues, 3 models selected 
    14357 
    14358 > select add #52/3
    14359 
    14360 215700 atoms, 1779 bonds, 75 pseudobonds, 17673 residues, 4 models selected 
    14361 
    14362 > hide #!22 models
    14363 
    14364 > color zone #4 near sel distance 24
    14365 
    14366 > volume splitbyzone #4
    14367 
    14368 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 0 as #23.1, grid size
    14369 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14370 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 1 as #23.2, grid size
    14371 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14372 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 2 as #23.3, grid size
    14373 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14374 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 3 as #23.4, grid size
    14375 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14376 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 4 as #23.5, grid size
    14377 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14378 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 5 as #23.6, grid size
    14379 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14380 Opened MultiPostProcessor_PPout_Decoding2_E.mrc 6 as #23.7, grid size
    14381 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14382 
    14383 > hide #!23 models
    14384 
    14385 > show #!5 models
    14386 
    14387 > select subtract #52/3
    14388 
    14389 214107 atoms, 11 pseudobonds, 17598 residues, 3 models selected 
    14390 
    14391 > hide #!5 models
    14392 
    14393 Drag select of 18113 residues, 11 pseudobonds 
    14394 
    14395 > select subtract #53/m
    14396 
    14397 217893 atoms, 11 pseudobonds, 18037 residues, 4 models selected 
    14398 
    14399 > select subtract #52/3
    14400 
    14401 216300 atoms, 11 pseudobonds, 17962 residues, 4 models selected 
    14402 
    14403 > show #!5 models
    14404 
    14405 > color zone #5 near sel distance 24
    14406 
    14407 > hide #!52 models
    14408 
    14409 > hide #!53 models
    14410 
    14411 > hide #!58 models
    14412 
    14413 > lighting soft
    14414 
    14415 > lighting simple
    14416 
    14417 > show #!52 models
    14418 
    14419 > show #!53 models
    14420 
    14421 > show #!58 models
    14422 
    14423 > volume splitbyzone #5
    14424 
    14425 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 0 as #24.1, grid size
    14426 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14427 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 1 as #24.2, grid size
    14428 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14429 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 2 as #24.3, grid size
    14430 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14431 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 3 as #24.4, grid size
    14432 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14433 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 4 as #24.5, grid size
    14434 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14435 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 5 as #24.6, grid size
    14436 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14437 Opened MultiPostProcessor_PPout_Decoding2_IF5.mrc 6 as #24.7, grid size
    14438 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14439 
    14440 > hide #!24 models
    14441 
    14442 > show #!6 models
    14443 
    14444 > select subtract #53/eI
    14445 
    14446 215157 atoms, 11 pseudobonds, 17808 residues, 4 models selected 
    14447 
    14448 > color zone #6 near sel distance 24
    14449 
    14450 > volume splitbyzone #6
    14451 
    14452 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 0 as #25.1, grid size
    14453 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14454 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 1 as #25.2, grid size
    14455 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14456 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 2 as #25.3, grid size
    14457 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14458 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 3 as #25.4, grid size
    14459 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14460 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 4 as #25.5, grid size
    14461 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14462 Opened MultiPostProcessor_PPout_Decoding2_open.mrc 5 as #25.6, grid size
    14463 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14464 
    14465 > hide #!25 models
    14466 
    14467 > show #!7 models
    14468 
    14469 > show #!61 models
    14470 
    14471 > hide #!58 models
    14472 
    14473 > hide #!53 models
    14474 
    14475 > hide #!52 models
    14476 
    14477 > show #!52 models
    14478 
    14479 > select add #61
    14480 
    14481 422223 atoms, 221714 bonds, 5080 pseudobonds, 35411 residues, 8 models
    14482 selected 
    14483 
    14484 > select add #58
    14485 
    14486 423867 atoms, 446433 bonds, 9582 pseudobonds, 35488 residues, 9 models
    14487 selected 
    14488 
    14489 > select subtract #58
    14490 
    14491 214731 atoms, 221714 bonds, 5069 pseudobonds, 18406 residues, 6 models
    14492 selected 
    14493 
    14494 > select add #53
    14495 
    14496 418643 atoms, 441896 bonds, 10299 pseudobonds, 35094 residues, 9 models
    14497 selected 
    14498 
    14499 > select subtract #53
    14500 
    14501 213681 atoms, 221714 bonds, 5069 pseudobonds, 18196 residues, 5 models
    14502 selected 
    14503 
    14504 > select add #52
    14505 
    14506 428000 atoms, 458666 bonds, 10956 pseudobonds, 35789 residues, 8 models
    14507 selected 
    14508 
    14509 > select subtract #52
    14510 
    14511 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    14512 selected 
    14513 
    14514 > color zone #7 near sel distance 24
    14515 
    14516 > volume splitbyzone #7
    14517 
    14518 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 0 as #26.1, grid size
    14519 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14520 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 1 as #26.2, grid size
    14521 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14522 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 2 as #26.3, grid size
    14523 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14524 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 3 as #26.4, grid size
    14525 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14526 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 4 as #26.5, grid size
    14527 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14528 
    14529 > select add #52/3
    14530 
    14531 208659 atoms, 223493 bonds, 5133 pseudobonds, 17678 residues, 6 models
    14532 selected 
    14533 
    14534 > close #26
    14535 
    14536 > show #!7 models
    14537 
    14538 > color zone #7 near sel distance 24
    14539 
    14540 > volume splitbyzone #7
    14541 
    14542 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 0 as #26.1, grid size
    14543 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14544 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 1 as #26.2, grid size
    14545 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14546 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 2 as #26.3, grid size
    14547 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14548 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 3 as #26.4, grid size
    14549 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14550 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 4 as #26.5, grid size
    14551 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14552 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 5 as #26.6, grid size
    14553 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14554 
    14555 > hide #!61 models
    14556 
    14557 > close #26
    14558 
    14559 > show #!7 models
    14560 
    14561 > select #52/3:53
    14562 
    14563 23 atoms, 25 bonds, 1 residue, 1 model selected 
    14564 
    14565 > select up
    14566 
    14567 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    14568 
    14569 > hide #!52 models
    14570 
    14571 > show #!61 models
    14572 
    14573 > hide #!7 models
    14574 
    14575 Drag select of 16942 residues, 28 pseudobonds 
    14576 
    14577 > show #!52 models
    14578 
    14579 > hide #!61 models
    14580 
    14581 > show #!61 models
    14582 
    14583 > hide #!52 models
    14584 
    14585 > show #!52 models
    14586 
    14587 > show #!7 models
    14588 
    14589 > color zone #7 near sel distance 24
    14590 
    14591 > show #!53 models
    14592 
    14593 > hide #!7 models
    14594 
    14595 > graphics silhouettes false
    14596 
    14597 > graphics silhouettes true
    14598 
    14599 > hide #!53 models
    14600 
    14601 > show #!53 models
    14602 
    14603 > hide #!53 models
    14604 
    14605 > show #!60 models
    14606 
    14607 > hide #!60 models
    14608 
    14609 > show #!7 models
    14610 
    14611 > hide #!7 models
    14612 
    14613 > show #!7 models
    14614 
    14615 > hide #!7 models
    14616 
    14617 > show #!58 models
    14618 
    14619 > hide #!52 models
    14620 
    14621 > show #!52 models
    14622 
    14623 > hide #!52 models
    14624 
    14625 > show #!52 models
    14626 
    14627 > hide #!52 models
    14628 
    14629 > select #58/L1:176
    14630 
    14631 9 atoms, 8 bonds, 1 residue, 1 model selected 
    14632 
    14633 > select clear
    14634 
    14635 > hide #!61 models
    14636 
    14637 > show #!61 models
    14638 
    14639 > hide #!61 models
    14640 
    14641 > show #!61 models
    14642 
    14643 > select add #61
    14644 
    14645 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    14646 selected 
    14647 
    14648 > select add #58
    14649 
    14650 416202 atoms, 446433 bonds, 9582 pseudobonds, 34685 residues, 7 models
    14651 selected 
    14652 
    14653 > select sub#58/PT
    14654 
    14655 Expected an objects specifier or a keyword 
    14656 
    14657 > select subtract #58/PT
    14658 
    14659 414558 atoms, 444597 bonds, 9501 pseudobonds, 34608 residues, 7 models
    14660 selected 
    14661 
    14662 > show #!52 models
    14663 
    14664 > select add #52/3
    14665 
    14666 416151 atoms, 446376 bonds, 9565 pseudobonds, 34683 residues, 9 models
    14667 selected 
    14668 
    14669 > show #!7 models
    14670 
    14671 > color zone #7 near sel distance 24
    14672 
    14673 > hide #!61 models
    14674 
    14675 > show #!61 models
    14676 
    14677 > hide #!61 models
    14678 
    14679 > hide #!52 models
    14680 
    14681 > hide #!58 models
    14682 
    14683 > select subtract #61
    14684 
    14685 209085 atoms, 224662 bonds, 4496 pseudobonds, 17080 residues, 5 models
    14686 selected 
    14687 
    14688 > show #!61 models
    14689 
    14690 > hide #!7 models
    14691 
    14692 Drag select of 16942 residues, 28 pseudobonds 
    14693 
    14694 > show #!58 models
    14695 
    14696 > show #!52 models
    14697 
    14698 > show #!7 models
    14699 
    14700 > color zone #7 near sel distance 24
    14701 
    14702 [Repeated 2 time(s)]
    14703 
    14704 > hide #!58 models
    14705 
    14706 > show #!58 models
    14707 
    14708 > hide #!58 models
    14709 
    14710 > show #!58 models
    14711 
    14712 > hide #!7 models
    14713 
    14714 > show sel cartoons
    14715 
    14716 > hide #!58 models
    14717 
    14718 > show #!58 models
    14719 
    14720 > undo
    14721 
    14722 [Repeated 2 time(s)]
    14723 
    14724 > select add #58
    14725 
    14726 413976 atoms, 226498 bonds, 4605 pseudobonds, 34099 residues, 7 models
    14727 selected 
    14728 
    14729 > select subtract #58
    14730 
    14731 204840 atoms, 1779 bonds, 92 pseudobonds, 17017 residues, 4 models selected 
    14732 
    14733 > hide #!52 models
    14734 
    14735 > show #!52 models
    14736 
    14737 > hide #!52 models
    14738 
    14739 > hide #!61 models
    14740 
    14741 Drag select of 17005 residues, 11 pseudobonds 
    14742 
    14743 > show #!61 models
    14744 
    14745 > show #!52 models
    14746 
    14747 > select subtract #52/2
    14748 
    14749 412332 atoms, 1779 bonds, 103 pseudobonds, 34022 residues, 6 models selected 
    14750 
    14751 > hide #!52 models
    14752 
    14753 > select subtract #58/PT
    14754 
    14755 410688 atoms, 1779 bonds, 103 pseudobonds, 33945 residues, 6 models selected 
    14756 
    14757 > hide #!58 models
    14758 
    14759 > show #!52 models
    14760 
    14761 > show #!7 models
    14762 
    14763 > color zone #7 near sel distance 24
    14764 
    14765 > volume splitbyzone #7
    14766 
    14767 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 0 as #26.1, grid size
    14768 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14769 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 1 as #26.2, grid size
    14770 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14771 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 2 as #26.3, grid size
    14772 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14773 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 3 as #26.4, grid size
    14774 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14775 Opened MultiPostProcessor_PPout_Hibernating_E.mrc 4 as #26.5, grid size
    14776 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14777 
    14778 > hide #!26 models
    14779 
    14780 > show #!8 models
    14781 
    14782 > hide #!52 models
    14783 
    14784 > select add #52
    14785 
    14786 630029 atoms, 236952 bonds, 5926 pseudobonds, 52056 residues, 8 models
    14787 selected 
    14788 
    14789 > select subtract #52
    14790 
    14791 409095 atoms, 39 pseudobonds, 33870 residues, 4 models selected 
    14792 
    14793 > select add #58
    14794 
    14795 412383 atoms, 224719 bonds, 4541 pseudobonds, 34024 residues, 5 models
    14796 selected 
    14797 
    14798 > select subtract #58
    14799 
    14800 203247 atoms, 28 pseudobonds, 16942 residues, 2 models selected 
    14801 
    14802 > show #!53 models
    14803 
    14804 > hide #!8 models
    14805 
    14806 > select add #53
    14807 
    14808 408209 atoms, 220182 bonds, 5258 pseudobonds, 33840 residues, 6 models
    14809 selected 
    14810 
    14811 > select subtract #53
    14812 
    14813 203247 atoms, 28 pseudobonds, 16942 residues, 2 models selected 
    14814 
    14815 > hide #!61 models
    14816 
    14817 Drag select of 364 residues 
    14818 
    14819 > show #!61 models
    14820 
    14821 > show #!8 models
    14822 
    14823 > color zone #8 near sel distance 24
    14824 
    14825 > volume splitbyzone #8
    14826 
    14827 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 0 as #27.1, grid size
    14828 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14829 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 1 as #27.2, grid size
    14830 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14831 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 2 as #27.3, grid size
    14832 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14833 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 3 as #27.4, grid size
    14834 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14835 Opened MultiPostProcessor_PPout_Hibernating_IF5.mrc 4 as #27.5, grid size
    14836 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14837 
    14838 > hide #!27 models
    14839 
    14840 > save
    14841 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/202512_subunitcolouring.cxs
    14842 > includeMaps true
    14843 
    14844 > show #!9 models
    14845 
    14846 > hide #!53 models
    14847 
    14848 > select add #53
    14849 
    14850 408209 atoms, 220182 bonds, 5258 pseudobonds, 33840 residues, 6 models
    14851 selected 
    14852 
    14853 > select subtract #53
    14854 
    14855 203247 atoms, 28 pseudobonds, 16942 residues, 2 models selected 
    14856 
    14857 > show #!60 models
    14858 
    14859 > hide #!60 models
    14860 
    14861 > color zone #9 near sel distance 36
    14862 
    14863 > volume splitbyzone #9
    14864 
    14865 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 0 as #28.1, grid size
    14866 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14867 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 1 as #28.2, grid size
    14868 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14869 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 2 as #28.3, grid size
    14870 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14871 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 3 as #28.4, grid size
    14872 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14873 
    14874 > close #28
    14875 
    14876 > show #!9 models
    14877 
    14878 > color zone #9 near sel distance 4
    14879 
    14880 > color zone #9 near sel distance 48
    14881 
    14882 > color zone #9 near sel distance 488
    14883 
    14884 > color zone #9 near sel distance 48
    14885 
    14886 > volume splitbyzone #9
    14887 
    14888 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 0 as #28.1, grid size
    14889 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14890 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 1 as #28.2, grid size
    14891 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14892 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 2 as #28.3, grid size
    14893 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14894 Opened MultiPostProcessor_PPout_Hibernating_open.mrc 3 as #28.4, grid size
    14895 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    14896 
    14897 > hide #!28 models
    14898 
    14899 > show #!9 models
    14900 
    14901 > hide #!9 models
    14902 
    14903 > show #!10 models
    14904 
    14905 > show #!11 models
    14906 
    14907 > show #!12 models
    14908 
    14909 > hide #!12 models
    14910 
    14911 > hide #!11 models
    14912 
    14913 > hide #!61 models
    14914 
    14915 > select add #61
    14916 
    14917 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    14918 selected 
    14919 
    14920 > select subtract #61
    14921 
    14922 Nothing selected 
    14923 
    14924 > show #!58 models
    14925 
    14926 > show #!52 models
    14927 
    14928 > hide #!52 models
    14929 
    14930 > show #!52 models
    14931 
    14932 > hide #!52 models
    14933 
    14934 > select add #58
    14935 
    14936 209136 atoms, 224719 bonds, 4513 pseudobonds, 17082 residues, 3 models
    14937 selected 
    14938 
    14939 > color zone #9 near sel distance 24
    14940 
    14941 > color zone #10 near sel distance 24
    14942 
    14943 > select subtract #58
    14944 
    14945 Nothing selected 
    14946 
    14947 > show #!28 models
    14948 
    14949 > hide #!28 models
    14950 
    14951 > show #!9 models
    14952 
    14953 > hide #!10 models
    14954 
    14955 > color single #9
    14956 
    14957 > hide #!58 models
    14958 
    14959 > show #!61 models
    14960 
    14961 > hide #!9 models
    14962 
    14963 Drag select of 16942 residues, 28 pseudobonds 
    14964 
    14965 > show #!9 models
    14966 
    14967 > show #!59 models
    14968 
    14969 > hide #!59 models
    14970 
    14971 > show #!59 models
    14972 
    14973 > hide #!59 models
    14974 
    14975 > show #!60 models
    14976 
    14977 > hide #!60 models
    14978 
    14979 > show #!58 models
    14980 
    14981 > hide #!58 models
    14982 
    14983 > show #!59 models
    14984 
    14985 > hide #!59 models
    14986 
    14987 > show #!60 models
    14988 
    14989 > hide #!60 models
    14990 
    14991 > color zone #9 near sel distance 48
    14992 
    14993 > select clear
    14994 
    14995 > hide #!9 models
    14996 
    14997 > show #!10 models
    14998 
    14999 > hide #!61 models
    15000 
    15001 > show #!52 models
    15002 
    15003 > show #!58 models
    15004 
    15005 > hide #!10 models
    15006 
    15007 > hide #!52 models
    15008 
    15009 Drag select of 16976 residues, 10 pseudobonds 
    15010 Drag select of 17005 residues, 11 pseudobonds 
    15011 
    15012 > show #!52 models
    15013 
    15014 > select add #52/3
    15015 
    15016 209085 atoms, 1779 bonds, 75 pseudobonds, 17080 residues, 4 models selected 
    15017 
    15018 > show #!10 models
    15019 
    15020 > color zone #10 near sel distance 24
    15021 
    15022 > volume splitbyzone #10
    15023 
    15024 Opened MultiPostProcessor_PPout_Post_E.mrc 0 as #29.1, grid size 128,128,128,
    15025 pixel 4, shown at level 0.6, step 1, values float32 
    15026 Opened MultiPostProcessor_PPout_Post_E.mrc 1 as #29.2, grid size 128,128,128,
    15027 pixel 4, shown at level 0.6, step 1, values float32 
    15028 Opened MultiPostProcessor_PPout_Post_E.mrc 2 as #29.3, grid size 128,128,128,
    15029 pixel 4, shown at level 0.6, step 1, values float32 
    15030 Opened MultiPostProcessor_PPout_Post_E.mrc 3 as #29.4, grid size 128,128,128,
    15031 pixel 4, shown at level 0.6, step 1, values float32 
    15032 Opened MultiPostProcessor_PPout_Post_E.mrc 4 as #29.5, grid size 128,128,128,
    15033 pixel 4, shown at level 0.6, step 1, values float32 
    15034 
    15035 > hide #!29 models
    15036 
    15037 > show #!11 models
    15038 
    15039 > select add #52
    15040 
    15041 428426 atoms, 236952 bonds, 5898 pseudobonds, 35191 residues, 6 models
    15042 selected 
    15043 
    15044 > select subtract #52
    15045 
    15046 207492 atoms, 11 pseudobonds, 17005 residues, 2 models selected 
    15047 
    15048 > hide #!52 models
    15049 
    15050 > show #!53 models
    15051 
    15052 > hide #!58 models
    15053 
    15054 > hide #!11 models
    15055 
    15056 Drag select of 364 residues 
    15057 
    15058 > show #!58 models
    15059 
    15060 > show #!12 models
    15061 
    15062 > hide #!12 models
    15063 
    15064 > show #!11 models
    15065 
    15066 > color zone #11 near sel distance 24
    15067 
    15068 > volume splitbyzone #11
    15069 
    15070 Opened MultiPostProcessor_PPout_Post_IF5.mrc 0 as #30.1, grid size
    15071 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15072 Opened MultiPostProcessor_PPout_Post_IF5.mrc 1 as #30.2, grid size
    15073 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15074 Opened MultiPostProcessor_PPout_Post_IF5.mrc 2 as #30.3, grid size
    15075 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15076 Opened MultiPostProcessor_PPout_Post_IF5.mrc 3 as #30.4, grid size
    15077 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15078 Opened MultiPostProcessor_PPout_Post_IF5.mrc 4 as #30.5, grid size
    15079 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15080 
    15081 > hide #!30 models
    15082 
    15083 > show #!12 models
    15084 
    15085 > select subtract #53/eI
    15086 
    15087 208542 atoms, 11 pseudobonds, 17215 residues, 3 models selected 
    15088 
    15089 > color zone #12 near sel distance 24
    15090 
    15091 > volume splitbyzone #12
    15092 
    15093 Opened MultiPostProcessor_PPout_Post_open.mrc 0 as #31.1, grid size
    15094 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15095 Opened MultiPostProcessor_PPout_Post_open.mrc 1 as #31.2, grid size
    15096 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15097 Opened MultiPostProcessor_PPout_Post_open.mrc 2 as #31.3, grid size
    15098 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15099 Opened MultiPostProcessor_PPout_Post_open.mrc 3 as #31.4, grid size
    15100 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15101 
    15102 > hide #!31 models
    15103 
    15104 > show #!9 models
    15105 
    15106 > show #!12 models
    15107 
    15108 > hide #!9 models
    15109 
    15110 > show #!9 models
    15111 
    15112 > hide #!12 models
    15113 
    15114 > hide #!9 models
    15115 
    15116 > show #!11 models
    15117 
    15118 > show #!13 models
    15119 
    15120 > hide #!11 models
    15121 
    15122 > hide #!53 models
    15123 
    15124 > hide #!58 models
    15125 
    15126 > select add #58
    15127 
    15128 210186 atoms, 224719 bonds, 4513 pseudobonds, 17292 residues, 4 models
    15129 selected 
    15130 
    15131 > select subtract #58
    15132 
    15133 1050 atoms, 210 residues, 1 model selected 
    15134 
    15135 > select add #53
    15136 
    15137 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    15138 selected 
    15139 
    15140 > select subtract #53
    15141 
    15142 Nothing selected 
    15143 
    15144 > show #!59 models
    15145 
    15146 > show #!51 models
    15147 
    15148 > show #!52 models
    15149 
    15150 > hide #!13 models
    15151 
    15152 > show #!13 models
    15153 
    15154 > hide #!52 models
    15155 
    15156 > show #!53 models
    15157 
    15158 > show #!14 models
    15159 
    15160 > hide #!13 models
    15161 
    15162 > show #!13 models
    15163 
    15164 > hide #!51 models
    15165 
    15166 > hide #!53 models
    15167 
    15168 > hide #!59 models
    15169 
    15170 > show #!17 models
    15171 
    15172 > hide #!17 models
    15173 
    15174 > show #!18 models
    15175 
    15176 > hide #!13 models
    15177 
    15178 > show #!13 models
    15179 
    15180 > hide #!18 models
    15181 
    15182 > hide #!14 models
    15183 
    15184 > show #!51 models
    15185 
    15186 > show #!59 models
    15187 
    15188 > hide #!51 models
    15189 
    15190 > show #!51 models
    15191 
    15192 > hide #!51 models
    15193 
    15194 > show #!51 models
    15195 
    15196 > hide #!59 models
    15197 
    15198 > show #!59 models
    15199 
    15200 > hide #!59 models
    15201 
    15202 > show #!59 models
    15203 
    15204 > hide #!51 models
    15205 
    15206 > show #!51 models
    15207 
    15208 > hide #!59 models
    15209 
    15210 > hide #!13 models
    15211 
    15212 Drag select of 17638 residues, 20 pseudobonds 
    15213 
    15214 > select subtract #51/33
    15215 
    15216 217771 atoms, 20 pseudobonds, 17563 residues, 2 models selected 
    15217 
    15218 > select subtract #51/q3
    15219 
    15220 216192 atoms, 20 pseudobonds, 17489 residues, 2 models selected 
    15221 
    15222 > hide sel cartoons
    15223 
    15224 > select clear
    15225 
    15226 Drag select of 149 residues 
    15227 
    15228 > show #!59 models
    15229 
    15230 > show #!58 models
    15231 
    15232 > hide #!59 models
    15233 
    15234 > show #!61 models
    15235 
    15236 > hide #!58 models
    15237 
    15238 > show #!59 models
    15239 
    15240 > hide #!61 models
    15241 
    15242 Drag select of 2261 residues, 1 pseudobonds 
    15243 
    15244 > select (sel & #59/74)
    15245 
    15246 568 atoms, 569 bonds, 72 residues, 1 model selected 
    15247 
    15248 > color sel gray
    15249 
    15250 > color sel dark gray
    15251 
    15252 > color sel dim gray
    15253 
    15254 > select clear
    15255 
    15256 Drag select of 17213 residues, 12 pseudobonds 
    15257 
    15258 > show #!13 models
    15259 
    15260 > color zone #12 near sel distance 24
    15261 
    15262 > show #!12 models
    15263 
    15264 > hide #!13 models
    15265 
    15266 > undo
    15267 
    15268 [Repeated 1 time(s)]
    15269 
    15270 > show #!12 models
    15271 
    15272 > hide #!13 models
    15273 
    15274 > undo
    15275 
    15276 [Repeated 3 time(s)]
    15277 
    15278 > show #!12 models
    15279 
    15280 > hide #!12 models
    15281 
    15282 > show #!13 models
    15283 
    15284 > color zone #13 near sel distance 24
    15285 
    15286 > volume splitbyzone #13
    15287 
    15288 Opened MultiPostProcessor_PPout_Rotated1.mrc 0 as #32.1, grid size
    15289 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15290 Opened MultiPostProcessor_PPout_Rotated1.mrc 1 as #32.2, grid size
    15291 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15292 Opened MultiPostProcessor_PPout_Rotated1.mrc 2 as #32.3, grid size
    15293 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15294 Opened MultiPostProcessor_PPout_Rotated1.mrc 3 as #32.4, grid size
    15295 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15296 Opened MultiPostProcessor_PPout_Rotated1.mrc 4 as #32.5, grid size
    15297 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15298 
    15299 > hide #!32 models
    15300 
    15301 > show #!14 models
    15302 
    15303 > show #!61 models
    15304 
    15305 > select add #61/eEF2
    15306 
    15307 217541 atoms, 6729 bonds, 19 pseudobonds, 18062 residues, 5 models selected 
    15308 
    15309 > color zone #14 near sel distance 24
    15310 
    15311 > volume splitbyzone #14
    15312 
    15313 Opened MultiPostProcessor_PPout_Rotated2.mrc 0 as #33.1, grid size
    15314 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15315 Opened MultiPostProcessor_PPout_Rotated2.mrc 1 as #33.2, grid size
    15316 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15317 Opened MultiPostProcessor_PPout_Rotated2.mrc 2 as #33.3, grid size
    15318 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15319 Opened MultiPostProcessor_PPout_Rotated2.mrc 3 as #33.4, grid size
    15320 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15321 Opened MultiPostProcessor_PPout_Rotated2.mrc 4 as #33.5, grid size
    15322 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15323 Opened MultiPostProcessor_PPout_Rotated2.mrc 5 as #33.6, grid size
    15324 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15325 Opened MultiPostProcessor_PPout_Rotated2.mrc 6 as #33.7, grid size
    15326 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15327 
    15328 > hide #!33 models
    15329 
    15330 > show #!15 models
    15331 
    15332 > hide #!51 models
    15333 
    15334 > show #!52 models
    15335 
    15336 > show #!51 models
    15337 
    15338 > hide #!51 models
    15339 
    15340 > select add #51
    15341 
    15342 434041 atoms, 242506 bonds, 3994 pseudobonds, 35859 residues, 8 models
    15343 selected 
    15344 
    15345 > select subtract #51
    15346 
    15347 214358 atoms, 6729 bonds, 19 pseudobonds, 17913 residues, 4 models selected 
    15348 
    15349 > hide #!61 models
    15350 
    15351 > show #!58 models
    15352 
    15353 > hide #!59 models
    15354 
    15355 > select add #59
    15356 
    15357 214358 atoms, 229836 bonds, 4435 pseudobonds, 17913 residues, 5 models
    15358 selected 
    15359 
    15360 > select subtract #59
    15361 
    15362 6607 atoms, 6729 bonds, 7 pseudobonds, 849 residues, 2 models selected 
    15363 
    15364 > select add #61
    15365 
    15366 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    15367 selected 
    15368 
    15369 > select subtract #61
    15370 
    15371 Nothing selected 
    15372 
    15373 > show #!59 models
    15374 
    15375 > hide #!59 models
    15376 
    15377 > hide #!58 models
    15378 
    15379 > show #!14 models
    15380 
    15381 > show #!13 models
    15382 
    15383 > hide #!14 models
    15384 
    15385 > hide #!13 models
    15386 
    15387 > show #!5 models
    15388 
    15389 > hide #!5 models
    15390 
    15391 > show #!18 models
    15392 
    15393 > hide #!18 models
    15394 
    15395 > show #!18 models
    15396 
    15397 > hide #!18 models
    15398 
    15399 > show #!58 models
    15400 
    15401 > show #!61 models
    15402 
    15403 > hide #!15 models
    15404 
    15405 > hide #!52 models
    15406 
    15407 > hide #!61 models
    15408 
    15409 Drag select of 17005 residues, 11 pseudobonds 
    15410 
    15411 > hide #!58 models
    15412 
    15413 > show #!61 models
    15414 
    15415 > select add #61/eEF2
    15416 
    15417 214099 atoms, 6729 bonds, 18 pseudobonds, 17854 residues, 4 models selected 
    15418 
    15419 > hide #!61 models
    15420 
    15421 > show #!58 models
    15422 
    15423 > show #!52 models
    15424 
    15425 > show #!61 models
    15426 
    15427 > hide #!52 models
    15428 
    15429 > hide #!61 models
    15430 
    15431 > show #!61 models
    15432 
    15433 > show #!52 models
    15434 
    15435 > select add #52/3
    15436 
    15437 215692 atoms, 8508 bonds, 82 pseudobonds, 17929 residues, 6 models selected 
    15438 
    15439 > show #!10 models
    15440 
    15441 > show #!15 models
    15442 
    15443 > hide #!10 models
    15444 
    15445 > color zone #15 near sel distance 24
    15446 
    15447 > volume splitbyzone #15
    15448 
    15449 Opened MultiPostProcessor_PPout_Translocating_E.mrc 0 as #34.1, grid size
    15450 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15451 Opened MultiPostProcessor_PPout_Translocating_E.mrc 1 as #34.2, grid size
    15452 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15453 Opened MultiPostProcessor_PPout_Translocating_E.mrc 2 as #34.3, grid size
    15454 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15455 Opened MultiPostProcessor_PPout_Translocating_E.mrc 3 as #34.4, grid size
    15456 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15457 Opened MultiPostProcessor_PPout_Translocating_E.mrc 4 as #34.5, grid size
    15458 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15459 Opened MultiPostProcessor_PPout_Translocating_E.mrc 5 as #34.6, grid size
    15460 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15461 Opened MultiPostProcessor_PPout_Translocating_E.mrc 6 as #34.7, grid size
    15462 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15463 
    15464 > hide #!34 models
    15465 
    15466 > show #!16 models
    15467 
    15468 > select subtract #52/3
    15469 
    15470 214099 atoms, 6729 bonds, 18 pseudobonds, 17854 residues, 4 models selected 
    15471 
    15472 > hide #!52 models
    15473 
    15474 > show #!53 models
    15475 
    15476 > hide #!58 models
    15477 
    15478 > hide #!61 models
    15479 
    15480 > hide #!16 models
    15481 
    15482 Drag select of 364 residues 
    15483 
    15484 > show #!58 models
    15485 
    15486 > show #!61 models
    15487 
    15488 > show #!16 models
    15489 
    15490 > color zone #16 near sel distance 24
    15491 
    15492 > volume splitbyzone #16
    15493 
    15494 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 0 as #35.1, grid size
    15495 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15496 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 1 as #35.2, grid size
    15497 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15498 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 2 as #35.3, grid size
    15499 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15500 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 3 as #35.4, grid size
    15501 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15502 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 4 as #35.5, grid size
    15503 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15504 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 5 as #35.6, grid size
    15505 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15506 Opened MultiPostProcessor_PPout_Translocating_IF5.mrc 6 as #35.7, grid size
    15507 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15508 
    15509 > hide #!35 models
    15510 
    15511 > show #!17 models
    15512 
    15513 > select add #53
    15514 
    15515 419061 atoms, 226911 bonds, 5248 pseudobonds, 34752 residues, 8 models
    15516 selected 
    15517 
    15518 > select subtract #53
    15519 
    15520 214099 atoms, 6729 bonds, 18 pseudobonds, 17854 residues, 4 models selected 
    15521 
    15522 > hide #!53 models
    15523 
    15524 > volume #17 level 0.5227
    15525 
    15526 > volume #17 level 0.4487
    15527 
    15528 > volume #17 level 0.4991
    15529 
    15530 > volume #17 level 0.5
    15531 
    15532 > color zone #17 near sel distance 24
    15533 
    15534 > volume splitbyzone #17
    15535 
    15536 Opened MultiPostProcessor_PPout_Translocating_open.mrc 0 as #36.1, grid size
    15537 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15538 Opened MultiPostProcessor_PPout_Translocating_open.mrc 1 as #36.2, grid size
    15539 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15540 Opened MultiPostProcessor_PPout_Translocating_open.mrc 2 as #36.3, grid size
    15541 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15542 Opened MultiPostProcessor_PPout_Translocating_open.mrc 3 as #36.4, grid size
    15543 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15544 Opened MultiPostProcessor_PPout_Translocating_open.mrc 4 as #36.5, grid size
    15545 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15546 Opened MultiPostProcessor_PPout_Translocating_open.mrc 5 as #36.6, grid size
    15547 128,128,128, pixel 4, shown at level 0.5, step 1, values float32 
    15548 
    15549 > hide #!36 models
    15550 
    15551 > show #!18 models
    15552 
    15553 > hide #!61 models
    15554 
    15555 > select add #61
    15556 
    15557 414558 atoms, 221714 bonds, 5080 pseudobonds, 34608 residues, 6 models
    15558 selected 
    15559 
    15560 > select subtract #61
    15561 
    15562 207492 atoms, 11 pseudobonds, 17005 residues, 2 models selected 
    15563 
    15564 > show #!61 models
    15565 
    15566 > select add #61/eEF2
    15567 
    15568 214099 atoms, 6729 bonds, 18 pseudobonds, 17854 residues, 4 models selected 
    15569 
    15570 > hide #!61 models
    15571 
    15572 > show #!53 models
    15573 
    15574 > hide #!58 models
    15575 
    15576 > hide #!18 models
    15577 
    15578 Drag select of 440 residues 
    15579 
    15580 > show #!58 models
    15581 
    15582 > show #!18 models
    15583 
    15584 > color zone #18 near sel distance 24
    15585 
    15586 > color single #18
    15587 
    15588 > show #!61 models
    15589 
    15590 > hide #!58 models
    15591 
    15592 > hide #!53 models
    15593 
    15594 > hide #!18 models
    15595 
    15596 > select add #61
    15597 
    15598 418362 atoms, 221714 bonds, 5080 pseudobonds, 35048 residues, 7 models
    15599 selected 
    15600 
    15601 > select subtract #61
    15602 
    15603 211296 atoms, 11 pseudobonds, 17445 residues, 3 models selected 
    15604 Drag select of 2432 residues, 8 pseudobonds 
    15605 Drag select of 777 residues 
    15606 Drag select of 3298 residues, 2 pseudobonds 
    15607 
    15608 > select (sel & #61/eEF2)
    15609 
    15610 4941 atoms, 5030 bonds, 637 residues, 1 model selected 
    15611 
    15612 > hide #!61 models
    15613 
    15614 > show #!58 models
    15615 
    15616 Drag select of 17005 residues, 11 pseudobonds 
    15617 
    15618 > hide #!58 models
    15619 
    15620 > show #!52 models
    15621 
    15622 > hide #!52 models
    15623 
    15624 > show #!53 models
    15625 
    15626 Drag select of 440 residues 
    15627 
    15628 > show #!58 models
    15629 
    15630 > show #!61 models
    15631 
    15632 > show #!18 models
    15633 
    15634 > color zone #18 near sel distance 24
    15635 
    15636 > volume splitbyzone #18
    15637 
    15638 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 0 as #37.1, grid
    15639 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15640 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 1 as #37.2, grid
    15641 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15642 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 2 as #37.3, grid
    15643 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15644 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 3 as #37.4, grid
    15645 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15646 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 4 as #37.5, grid
    15647 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15648 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 5 as #37.6, grid
    15649 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15650 Opened MultiPostProcessor_PPout_UnrotatedPre_cEF2_IF5.mrc 6 as #37.7, grid
    15651 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15652 
    15653 > hide #!37 models
    15654 
    15655 > show #!19 models
    15656 
    15657 > hide #!61 models
    15658 
    15659 > select add #61
    15660 
    15661 418362 atoms, 221714 bonds, 5080 pseudobonds, 35048 residues, 7 models
    15662 selected 
    15663 
    15664 > select subtract #61
    15665 
    15666 211296 atoms, 11 pseudobonds, 17445 residues, 3 models selected 
    15667 
    15668 > color zone #19 near sel distance 24
    15669 
    15670 > volume splitbyzone #19
    15671 
    15672 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 0 as #38.1, grid
    15673 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15674 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 1 as #38.2, grid
    15675 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15676 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 2 as #38.3, grid
    15677 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15678 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 3 as #38.4, grid
    15679 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15680 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 4 as #38.5, grid
    15681 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15682 Opened MultiPostProcessor_PPout_UnrotatedPre_none_IF5.mrc 5 as #38.6, grid
    15683 size 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    15684 
    15685 > hide #!38 models
    15686 
    15687 > select add #53
    15688 
    15689 412454 atoms, 220182 bonds, 5241 pseudobonds, 33903 residues, 6 models
    15690 selected 
    15691 
    15692 > select add #58
    15693 
    15694 414098 atoms, 444901 bonds, 9743 pseudobonds, 33980 residues, 7 models
    15695 selected 
    15696 
    15697 > select subtract #58
    15698 
    15699 204962 atoms, 220182 bonds, 5230 pseudobonds, 16898 residues, 4 models
    15700 selected 
    15701 
    15702 > select subtract #53
    15703 
    15704 Nothing selected 
    15705 
    15706 > hide #!53 models
    15707 
    15708 > hide #!58 models
    15709 
    15710 > show #!38 models
    15711 
    15712 > save
    15713 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/202512_subunitcolouring.cxs
    15714 > includeMaps true
    15715 
    15716 > show #!20 models
    15717 
    15718 > show #!21 models
    15719 
    15720 > show #!22 models
    15721 
    15722 > show #!23 models
    15723 
    15724 > show #!24 models
    15725 
    15726 > show #!25 models
    15727 
    15728 > show #!26 models
    15729 
    15730 > hide #!26 models
    15731 
    15732 > show #!26 models
    15733 
    15734 > show #!27 models
    15735 
    15736 > show #!28 models
    15737 
    15738 > show #!29 models
    15739 
    15740 > show #!30 models
    15741 
    15742 > show #!31 models
    15743 
    15744 > show #!32 models
    15745 
    15746 > show #!33 models
    15747 
    15748 > show #!34 models
    15749 
    15750 > show #!35 models
    15751 
    15752 > show #!36 models
    15753 
    15754 > show #!37 models
    15755 
    15756 > surface dust #20.1 size 40
    15757 
    15758 > surface dust #20.2 size 40
    15759 
    15760 > surface dust #20.3 size 40
    15761 
    15762 > surface dust #20.4 size 40
    15763 
    15764 > surface dust #20.5 size 40
    15765 
    15766 > surface dust #20.6 size 40
    15767 
    15768 > surface dust #20.7 size 40
    15769 
    15770 > surface dust #21.2 size 40
    15771 
    15772 > surface dust #21.3 size 40
    15773 
    15774 > surface dust #21.4 size 40
    15775 
    15776 > surface dust #21.5 size 40
    15777 
    15778 > surface dust #21.6 size 40
    15779 
    15780 > surface dust #21.7 size 40
    15781 
    15782 > surface dust #22.1 size 40
    15783 
    15784 > surface dust #22.2 size 40
    15785 
    15786 > surface dust #22.3 size 40
    15787 
    15788 > surface dust #22.4 size 40
    15789 
    15790 > surface dust #22.5 size 40
    15791 
    15792 > surface dust #22.6 size 40
    15793 
    15794 > surface dust #23.1 size 40
    15795 
    15796 > surface dust #23.2 size 40
    15797 
    15798 > surface dust #23.3 size 40
    15799 
    15800 > surface dust #23.4 size 40
    15801 
    15802 > surface dust #23.5 size 40
    15803 
    15804 > surface dust #23.6 size 40
    15805 
    15806 > surface dust #23.7 size 40
    15807 
    15808 > surface dust #24.1 size 40
    15809 
    15810 > surface dust #24.2 size 40
    15811 
    15812 > surface dust #24.3 size 40
    15813 
    15814 > surface dust #24.4 size 40
    15815 
    15816 > surface dust #24.5 size 40
    15817 
    15818 > surface dust #24.6 size 40
    15819 
    15820 > surface dust #24.7 size 40
    15821 
    15822 > surface dust #25.1 size 40
    15823 
    15824 > surface dust #25.2 size 40
    15825 
    15826 > surface dust #25.3 size 40
    15827 
    15828 > surface dust #25.4 size 40
    15829 
    15830 > surface dust #25.5 size 40
    15831 
    15832 > surface dust #25.6 size 40
    15833 
    15834 > surface dust #26.1 size 40
    15835 
    15836 > surface dust #26.2 size 40
    15837 
    15838 > surface dust #26.3 size 40
    15839 
    15840 > surface dust #26.4 size 40
    15841 
    15842 > surface dust #26.5 size 40
    15843 
    15844 > surface dust #27.1 size 40
    15845 
    15846 > surface dust #27.2 size 40
    15847 
    15848 > surface dust #27.3 size 40
    15849 
    15850 > surface dust #27.4 size 40
    15851 
    15852 > surface dust #27.5 size 40
    15853 
    15854 > surface dust #28.1 size 40
    15855 
    15856 > surface dust #28.2 size 40
    15857 
    15858 > surface dust #28.3 size 40
    15859 
    15860 > surface dust #28.4 size 40
    15861 
    15862 > surface dust #29.1 size 40
    15863 
    15864 > surface dust #29.2 size 40
    15865 
    15866 > surface dust #29.3 size 40
    15867 
    15868 > surface dust #29.4 size 40
    15869 
    15870 > surface dust #29.5 size 40
    15871 
    15872 > surface dust #30.1 size 40
    15873 
    15874 > surface dust #30.2 size 40
    15875 
    15876 > surface dust #30.3 size 40
    15877 
    15878 > surface dust #30.4 size 40
    15879 
    15880 > surface dust #30.5 size 40
    15881 
    15882 > surface dust #31.1 size 40
    15883 
    15884 > surface dust #31.2 size 40
    15885 
    15886 > surface dust #31.3 size 40
    15887 
    15888 > surface dust #31.4 size 40
    15889 
    15890 > surface dust #32.1 size 40
    15891 
    15892 > surface dust #32.2 size 40
    15893 
    15894 > surface dust #32.3 size 40
    15895 
    15896 > surface dust #32.4 size 40
    15897 
    15898 > surface dust #32.5 size 40
    15899 
    15900 > surface dust #33.1 size 40
    15901 
    15902 > surface dust #33.2 size 40
    15903 
    15904 > surface dust #33.3 size 40
    15905 
    15906 > surface dust #33.4 size 40
    15907 
    15908 > surface dust #33.5 size 40
    15909 
    15910 > surface dust #33.6 size 40
    15911 
    15912 > surface dust #33.7 size 40
    15913 
    15914 > surface dust #34.1 size 40
    15915 
    15916 > surface dust #34.2 size 40
    15917 
    15918 > surface dust #34.3 size 40
    15919 
    15920 > surface dust #34.4 size 40
    15921 
    15922 > surface dust #34.5 size 40
    15923 
    15924 > surface dust #34.6 size 40
    15925 
    15926 > surface dust #34.7 size 40
    15927 
    15928 > surface dust #35.1 size 40
    15929 
    15930 > surface dust #35.2 size 40
    15931 
    15932 > surface dust #35.3 size 40
    15933 
    15934 > surface dust #35.4 size 40
    15935 
    15936 > surface dust #35.5 size 40
    15937 
    15938 > surface dust #35.6 size 40
    15939 
    15940 > surface dust #35.7 size 40
    15941 
    15942 > surface dust #36.1 size 40
    15943 
    15944 > surface dust #36.2 size 40
    15945 
    15946 > surface dust #36.3 size 40
    15947 
    15948 > surface dust #36.4 size 40
    15949 
    15950 > surface dust #36.5 size 40
    15951 
    15952 > surface dust #36.6 size 40
    15953 
    15954 > surface dust #37.1 size 40
    15955 
    15956 > surface dust #37.2 size 40
    15957 
    15958 > surface dust #37.3 size 40
    15959 
    15960 > surface dust #37.4 size 40
    15961 
    15962 > surface dust #37.5 size 40
    15963 
    15964 > surface dust #37.6 size 40
    15965 
    15966 > surface dust #37.7 size 40
    15967 
    15968 > surface dust #38.1 size 40
    15969 
    15970 > surface dust #38.2 size 40
    15971 
    15972 > surface dust #38.3 size 40
    15973 
    15974 > surface dust #38.4 size 40
    15975 
    15976 > surface dust #38.5 size 40
    15977 
    15978 > surface dust #38.6 size 40
    15979 
    15980 > hide #!38 models
    15981 
    15982 > hide #!37 models
    15983 
    15984 > hide #!35 models
    15985 
    15986 > hide #!34 models
    15987 
    15988 > hide #!33 models
    15989 
    15990 > hide #!31 models
    15991 
    15992 > hide #!32 models
    15993 
    15994 > hide #!30 models
    15995 
    15996 > hide #!29 models
    15997 
    15998 > hide #!28 models
    15999 
    16000 > hide #!27 models
    16001 
    16002 > hide #!26 models
    16003 
    16004 > hide #!25 models
    16005 
    16006 > hide #!24 models
    16007 
    16008 > hide #!23 models
    16009 
    16010 > hide #!22 models
    16011 
    16012 > hide #!21 models
    16013 
    16014 > show #!21 models
    16015 
    16016 > hide #!21 models
    16017 
    16018 > hide #!20 models
    16019 
    16020 > show #!20 models
    16021 
    16022 > hide #!20 models
    16023 
    16024 > hide #!36 models
    16025 
    16026 > show #!37 models
    16027 
    16028 > hide #!37 models
    16029 
    16030 > show #!38 models
    16031 
    16032 > show #!37 models
    16033 
    16034 > save
    16035 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/202512_subunitcolouring.cxs
    16036 > includeMaps true
    16037 
    16038 ——— End of log from Wed Dec 17 16:42:20 2025 ———
    16039 
    16040 > view name session-start
    16041 
    16042 opened ChimeraX session 
    16043 
    16044 > hide #!38 models
    16045 
    16046 > hide #!37 models
    16047 
    16048 > show #!38 models
    16049 
    16050 > hide #!38 models
    16051 
    16052 > show #!33 models
    16053 
    16054 > show #!32 models
    16055 
    16056 > hide #!33 models
    16057 
    16058 > hide #!32 models
    16059 
    16060 > show #!33 models
    16061 
    16062 > hide #!33 models
    16063 
    16064 > show #!20 models
    16065 
    16066 > select add #20
    16067 
    16068 15 models selected 
    16069 
    16070 > select subtract #20
    16071 
    16072 Nothing selected 
    16073 
    16074 > hide #!20 models
    16075 
    16076 > show #!23 models
    16077 
    16078 > show #!24 models
    16079 
    16080 > hide #!23 models
    16081 
    16082 > hide #!24 models
    16083 
    16084 > show #!20 models
    16085 
    16086 > hide #!20 models
    16087 
    16088 > show #!23 models
    16089 
    16090 > hide #!23 models
    16091 
    16092 > show #!24 models
    16093 
    16094 > hide #!24.7 models
    16095 
    16096 > show #!24.7 models
    16097 
    16098 > select add #24
    16099 
    16100 15 models selected 
    16101 
    16102 > hide #!24.7 models
    16103 
    16104 > show #!24.7 models
    16105 
    16106 > hide #!24 models
    16107 
    16108 > show #!24 models
    16109 
    16110 > select subtract #24
    16111 
    16112 Nothing selected 
    16113 
    16114 > hide #!24.6 models
    16115 
    16116 > hide #!24.5 models
    16117 
    16118 > hide #!24.4 models
    16119 
    16120 > hide #!24.3 models
    16121 
    16122 > hide #!24.2 models
    16123 
    16124 > hide #!24.1 models
    16125 
    16126 > hide #!24.7 models
    16127 
    16128 > show #!24.7 models
    16129 
    16130 > hide #!24.7 models
    16131 
    16132 > show #!24.7 models
    16133 
    16134 > show #!5 models
    16135 
    16136 > hide #!5 models
    16137 
    16138 > hide #!24 models
    16139 
    16140 > surface undust all
    16141 
    16142 > show #!24 models
    16143 
    16144 > show #!24.2 models
    16145 
    16146 > show #!24.3 models
    16147 
    16148 > show #!24.4 models
    16149 
    16150 > show #!24.5 models
    16151 
    16152 > show #!24.6 models
    16153 
    16154 > show #!33 models
    16155 
    16156 > hide #!24 models
    16157 
    16158 > show #!61 models
    16159 
    16160 > hide #!61 models
    16161 
    16162 > show #!51 models
    16163 
    16164 > hide #!33 models
    16165 
    16166 > show #!61 models
    16167 
    16168 > show #!59 models
    16169 
    16170 > hide #!61 models
    16171 
    16172 > select add #59
    16173 
    16174 207751 atoms, 223107 bonds, 4428 pseudobonds, 17064 residues, 3 models
    16175 selected 
    16176 
    16177 > show sel atoms
    16178 
    16179 > undo
    16180 
    16181 > select subtract #59
    16182 
    16183 Nothing selected 
    16184 
    16185 > select add #51
    16186 
    16187 219683 atoms, 235777 bonds, 3975 pseudobonds, 17946 residues, 4 models
    16188 selected 
    16189 
    16190 > show sel atoms
    16191 
    16192 > undo
    16193 
    16194 > select subtract #51
    16195 
    16196 Nothing selected 
    16197 
    16198 > show #!14 models
    16199 
    16200 > hide #!14 models
    16201 
    16202 > show #!14 models
    16203 
    16204 > show #!24 models
    16205 
    16206 > hide #!24 models
    16207 
    16208 > hide #!51 models
    16209 
    16210 > show #!51 models
    16211 
    16212 > show #!61 models
    16213 
    16214 > hide #!14 models
    16215 
    16216 > hide #!59 models
    16217 
    16218 > hide #!51 models
    16219 
    16220 > show #!51 models
    16221 
    16222 > hide #!61 models
    16223 
    16224 > show #!61 models
    16225 
    16226 > select clear
    16227 
    16228 Drag select of 3625 residues, 12 pseudobonds 
    16229 
    16230 > hide #!51 models
    16231 
    16232 > show #!14 models
    16233 
    16234 Drag select of 4459 residues, 14 pseudobonds, 14
    16235 MultiPostProcessor_PPout_Rotated2.mrc 
    16236 
    16237 > hide #!14 models
    16238 
    16239 > show #!51 models
    16240 
    16241 > show #!14 models
    16242 
    16243 > select subtract #14
    16244 
    16245 51621 atoms, 14 pseudobonds, 4459 residues, 2 models selected 
    16246 
    16247 > hide #!14 models
    16248 
    16249 > show #!14 models
    16250 
    16251 > hide #!14 models
    16252 
    16253 > show #!14 models
    16254 
    16255 Drag select of 4110 residues, 12 pseudobonds, 14
    16256 MultiPostProcessor_PPout_Rotated2.mrc 
    16257 
    16258 > select subtract #14
    16259 
    16260 46106 atoms, 12 pseudobonds, 4110 residues, 3 models selected 
    16261 
    16262 > hide #!14 models
    16263 
    16264 > show #!14 models
    16265 
    16266 > hide #!14 models
    16267 
    16268 > show #!14 models
    16269 
    16270 > select sel & #61/eEF2
    16271 
    16272 6074 atoms, 6181 bonds, 782 residues, 1 model selected 
    16273 
    16274 > hide #!14 models
    16275 
    16276 > hide #!51 models
    16277 
    16278 > show #!51 models
    16279 
    16280 > hide #!61 models
    16281 
    16282 > show #!59 models
    16283 
    16284 Drag select of 17213 residues, 12 pseudobonds 
    16285 
    16286 > show #!61 models
    16287 
    16288 > hide #!61 models
    16289 
    16290 > ui tool show "Color Zone"
    16291 
    16292 > color zone #50 near #59 distance 4
    16293 
    16294 > show #!14 models
    16295 
    16296 > color zone #14 near sel distance 24
    16297 
    16298 > close #33
    16299 
    16300 > volume splitbyzone #14
    16301 
    16302 Opened MultiPostProcessor_PPout_Rotated2.mrc 0 as #33.1, grid size
    16303 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16304 Opened MultiPostProcessor_PPout_Rotated2.mrc 1 as #33.2, grid size
    16305 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16306 Opened MultiPostProcessor_PPout_Rotated2.mrc 2 as #33.3, grid size
    16307 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16308 Opened MultiPostProcessor_PPout_Rotated2.mrc 3 as #33.4, grid size
    16309 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16310 Opened MultiPostProcessor_PPout_Rotated2.mrc 4 as #33.5, grid size
    16311 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16312 Opened MultiPostProcessor_PPout_Rotated2.mrc 5 as #33.6, grid size
    16313 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    16314 
    16315 > hide #!33.1 models
    16316 
    16317 > select clear
    16318 
    16319 > show #!33.1 models
    16320 
    16321 > save
    16322 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/202512_subunitcolouring.cxs
    16323 > includeMaps true
    16324 
    16325 ——— End of log from Wed Jan 7 10:53:50 2026 ———
    16326 
    16327 > view name session-start
    16328 
    16329 opened ChimeraX session 
    16330 
    16331 > show #!58 models
    16332 
    16333 > hide #!59 models
    16334 
    16335 > hide #!58 models
    16336 
    16337 > show #!58 models
    16338 
    16339 > show #!59 models
    16340 
    16341 > select #58 color=20B2AA
    16342 
    16343 Expected a keyword 
    16344 
    16345 > select color=20B2AA
    16346 
    16347 Expected an objects specifier or a keyword 
    16348 
    16349 > @/color=20B2AA
    16350 
    16351 Unknown command: @/color=20B2AA 
    16352 
    16353 > select @/color=20B2AA
    16354 
    16355 Expected an objects specifier or a keyword 
    16356 
    16357 > select ssu
    16358 
    16359 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    16360 selected 
    16361 
    16362 > show #!61 models
    16363 
    16364 > show #!60 models
    16365 
    16366 > hide #!60 models
    16367 
    16368 > select ssu
    16369 
    16370 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    16371 selected 
    16372 
    16373 > hide #!58 models
    16374 
    16375 > hide #!59 models
    16376 
    16377 > hide #!61 models
    16378 
    16379 > show #!59 models
    16380 
    16381 > hide #!59 models
    16382 
    16383 > show #!58 models
    16384 
    16385 > hide #!58 models
    16386 
    16387 > show #!60 models
    16388 
    16389 > select clear
    16390 
    16391 > select ssu
    16392 
    16393 362373 atoms, 396658 bonds, 12006 pseudobonds, 23927 residues, 14 models
    16394 selected 
    16395 
    16396 > close #1-38#33.1-6
    16397 
    16398 > close #60
    16399 
    16400 > hide #!51 models
    16401 
    16402 > show #!50 models
    16403 
    16404 > show #!58 models
    16405 
    16406 > show #!59 models
    16407 
    16408 > show #!61 models
    16409 
    16410 > hide #!50 models
    16411 
    16412 > hide #!59 models
    16413 
    16414 > show #!59 models
    16415 
    16416 > hide #!59 models
    16417 
    16418 > hide #!61 models
    16419 
    16420 > hide #!58 models
    16421 
    16422 > show #!59 models
    16423 
    16424 > hide #!59 models
    16425 
    16426 > show #!61 models
    16427 
    16428 > log metadata #51
    16429 
    16430 No models had metadata
    16431 
    16432 > log chains #51
    16433 
    16434 Chain information for A/P, P/E #51 
    16435 --- 
    16436 Chain | Description | UniProt 
    16437 1 | nascent chain |   
    16438 33 | P/E tRNA |   
    16439 51 | 28S ribosomal RNA |   
    16440 71 | 5S ribosomal RNA |   
    16441 81 | 5.8S ribosomal RNA |   
    16442 A2 | 18S ribosomal RNA |   
    16443 A3 | Ribosomal protein L8 | G1TT27_RABIT 1-257 
    16444 B2 | uS2 |   
    16445 B3 | uL3 | G1TL06_RABIT 2-403 
    16446 C2 | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    16447 C3 | uL4 |   
    16448 D2 | uS5 |   
    16449 D3 | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    16450 E2 | uS3 | G1TNM3_RABIT 1-243 
    16451 E3 | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    16452 F2 | eS4 |   
    16453 F3 | uL30 | G1TUB1_RABIT 1-247 
    16454 G2 | Ribosomal protein S5 | G1TFM5_RABIT 1-204 
    16455 G3 | eL8 |   
    16456 H2 | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    16457 H3 | uL6 | G1TX33_RABIT 1-192 
    16458 I2 | 40S ribosomal protein S7 | G1SVB0_RABIT 1-194 
    16459 I3 | 60S ribosomal protein L10 | B7NZQ2_RABIT 1-214 
    16460 J2 | eS8 |   
    16461 J3 | Ribosomal protein L11 | G1TUB8_RABIT 1-178 
    16462 K2 | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    16463 L2 | eS10 | G1TPV3_RABIT 1-165 
    16464 L3 | eL13 |   
    16465 M2 | Ribosomal protein S11 | G1TRM4_RABIT 1-158 
    16466 M3 | Ribosomal protein L14 | G1SZ12_RABIT 1-218 
    16467 N2 | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    16468 N3 | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    16469 O2 | uS15 | G1SP51_RABIT 1-151 
    16470 O3 | uL13 |   
    16471 P2 | uS11 |   
    16472 P3 | uL22 | G1TVT6_RABIT 1-184 
    16473 Q2 | uS19 | G1U0Q2_RABIT 1-145 
    16474 Q3 | eL18 |   
    16475 R2 | Ribosomal protein S16 | G1SGX4_RABIT 1-146 
    16476 R3 | eL19 |   
    16477 S2 | eS17 | G1TU13_RABIT 1-135 
    16478 S3 | eL20 |   
    16479 T2 | uS13 | G1TPG3_RABIT 1-152 
    16480 T3 | eL21 | G1SHQ2_RABIT 1-160 
    16481 U2 | eS19 |   
    16482 U3 | eL22 |   
    16483 V2 | uS10 | G1SIZ2_RABIT 1-119 
    16484 V3 | Ribosomal protein L23 | G1T6D1_RABIT 1-140 
    16485 W2 | eS21 |   
    16486 X2 | Ribosomal protein S15a | G1TG89_RABIT 1-130 
    16487 X3 | uL23 | G1SE76_RABIT 1-156 
    16488 Y2 | uS12 |   
    16489 Y3 | Ribosomal protein L26 | G1SQH0_RABIT 1-145 
    16490 Z2 | eS24 |   
    16491 Z3 | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    16492 a2 | eS25 | G1TDB3_RABIT 1-125 
    16493 a3 | uL15 | G1SNY0_RABIT 2-148 
    16494 b2 | eS26 |   
    16495 b3 | eL29 | G1SGR6_RABIT 1-226 
    16496 c2 | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    16497 c3 | eL30 | G1TDL2_RABIT 1-115 
    16498 d2 | Ribosomal protein S28 | G1TIB4_RABIT 1-69 
    16499 d3 | eL31 | G1SHG0_RABIT 1-125 
    16500 e2 | uS14 | G1U7M4_RABIT 1-56 
    16501 e3 | eL32 | G1U437_RABIT 1-135 
    16502 f2 | 40S ribosomal protein S30 | G1T8A2_RABIT 0-132 
    16503 f3 | eL33 | G1SF08_RABIT 1-110 
    16504 g2 | Ribosomal protein S27a | G1SK22_RABIT 1-156 
    16505 g3 | eL34 |   
    16506 h2 | RACK1 | G1SJB4_RABIT 1-317 
    16507 h3 | uL29 | G1SIT5_RABIT 1-123 
    16508 i3 | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    16509 j3 | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    16510 k3 | eL38 |   
    16511 l3 | eL39 | G1TTN1_RABIT 1-51 
    16512 m3 | eL40 |   
    16513 n3 | eL41 |   
    16514 o3 | eL42 |   
    16515 p3 | eL43 | G1SY53_RABIT 1-92 
    16516 q3 | A/P RNA |   
    16517 r3 | eL28 | G1U7L1_RABIT 1-137 
    16518 t3 | uL10 |   
    16519 u3 | Ribosomal protein L12 | G1SMR7_RABIT 1-165 
    16520 v3 | mRNA |   
    16521 w3 | uL1 | G1SKZ8_RABIT 1-217 
    16522  
    16523 
    16524 > log metadata #52
    16525 
    16526 No models had metadata
    16527 
    16528 > log chains #52
    16529 
    16530 Chain information for EF1, A/T, P, E #52 
    16531 --- 
    16532 Chain | Description | UniProt 
    16533 2 ii | tRNA |   
    16534 3 | E-site tRNA |   
    16535 5 | 28S ribosomal RNA |   
    16536 7 | 5S ribosomal RNA |   
    16537 8 | 5.8S ribosomal RNA |   
    16538 9 | 18S ribosomal RNA |   
    16539 A | uL2 | G1TT27_RABIT 1-257 
    16540 AA | uS2 |   
    16541 B | uL3 | G1TL06_RABIT 2-403 
    16542 BB | 40S ribosomal protein S3a | G1SS70_RABIT 1-264 
    16543 C | uL4 | G1SVW5_RABIT 1-378 
    16544 CC | uS5 |   
    16545 D | 60S ribosomal protein L5 | G1SYJ6_RABIT 2-297 
    16546 DD | uS4 | G1TNM3_RABIT 1-243 
    16547 E | 60S ribosomal protein L6 | G1SKF7_RABIT 1-291 
    16548 EE | 40S ribosomal protein S4 |   
    16549 F | uL30 | G1TUB1_RABIT 1-247 
    16550 FF | Uncharacterized protein | G1TFM5_RABIT 1-204 
    16551 G | eL8 | G1STW0_RABIT 78-319 
    16552 GG | 40S ribosomal protein S6 | G1TM55_RABIT 1-249 
    16553 H | uL6 | G1TX33_RABIT 1-192 
    16554 HH | uS7 | G1SVB0_RABIT 1-194 
    16555 I | Ribosomal protein L10 (Predicted) | B7NZQ2_RABIT 1-214 
    16556 II | 40S ribosomal protein S8 | G1TJW1_RABIT 1-208 
    16557 J | uL5 | G1TUB8_RABIT 1-178 
    16558 JJ | Ribosomal protein S9 (Predicted) | B7NZS8_RABIT 1-194 
    16559 KK | eS10 | G1TPV3_RABIT 1-165 
    16560 L | eL13 |   
    16561 LL | uS17 | G1TRM4_RABIT 1-158 
    16562 M | eL14 | G1SZ12_RABIT 1-218 
    16563 MM | 40S ribosomal protein S12 | G1SFR8_RABIT 1-132 
    16564 N | Ribosomal protein L15 | G1T0C1_RABIT 1-204 
    16565 NN | uS15 | G1SP51_RABIT 1-151 
    16566 O | uL13 |   
    16567 OO | uS11 | G1T1F0_RABIT -4-151 
    16568 P | uL22 | G1TVT6_RABIT 1-184 
    16569 PP | uS19 | G1U0Q2_RABIT 1-145 
    16570 Q | eL18 |   
    16571 QQ | uS9 | G1SGX4_RABIT 1-146 
    16572 R | eL19 |   
    16573 RR | eS17 | G1TU13_RABIT 1-135 
    16574 S | eL20 |   
    16575 SS | uS13 | G1TPG3_RABIT 1-152 
    16576 T | eL21 | G1SHQ2_RABIT 1-160 
    16577 TT | eS19 | G1TN62_RABIT 1-145 
    16578 U | eL22 |   
    16579 UU | uS10 | G1SIZ2_RABIT 1-119 
    16580 V | uL14 | G1T6D1_RABIT 1-140 
    16581 VV | eS21 |   
    16582 W | uL24 | G1SE28_RABIT 1-157 
    16583 WW | uS8 | G1TG89_RABIT 1-130 
    16584 X | uL23 | G1SE76_RABIT 1-156 
    16585 XX | uS12 |   
    16586 Y | uL24 | G1SQH0_RABIT 1-145 
    16587 YY | eS24 |   
    16588 Z | 60S ribosomal protein L27 | G1TXF6_RABIT 1-136 
    16589 ZZ | eS25 | G1TDB3_RABIT 1-125 
    16590 a | uL15 | G1SNY0_RABIT 1-148 
    16591 aa | eS26 |   
    16592 b | eL29 | G1SGR6_RABIT 1-226 
    16593 bb | 40S ribosomal protein S27 | G1TZ76_RABIT 1-84 
    16594 c | eL30 | G1TDL2_RABIT 1-115 
    16595 cc | eS28 | G1TIB4_RABIT 1-69 
    16596 d | eL31 | G1SHG0_RABIT 1-125 
    16597 dd | uS14 | G1U7M4_RABIT 1-56 
    16598 e | eL32 | G1U437_RABIT 1-135 
    16599 ee | eS30 | G1T8A2_RABIT 0-132 
    16600 f | eL33 | G1SF08_RABIT 1-110 
    16601 ff | eS31 | G1SK22_RABIT 1-156 
    16602 g | eL34 | G1U945_RABIT 1-116 
    16603 gg | RACK1 | G1SJB4_RABIT 1-317 
    16604 h | uL29 | G1SIT5_RABIT 1-123 
    16605 hh | mRNA |   
    16606 i | 60S ribosomal protein L36 | G1TTQ5_RABIT 1-105 
    16607 j | Ribosomal protein L37 | U3KPD5_RABIT 1-97 
    16608 jj | Elongation factor 1-alpha 1 | EF1A1_RABIT 1-462 
    16609 k | eL38 |   
    16610 l | eL39 | G1TTN1_RABIT 1-51 
    16611 m | eL40 |   
    16612 n | 60s ribosomal protein l41 |   
    16613 o | eL42 | G1U344_RABIT 1-106 
    16614 p | eL43 | G1SY53_RABIT 1-92 
    16615 r | eL28 | G1U7L1_RABIT 1-137 
    16616 s | uL10 |   
    16617 t | uL11 | G1SMR7_RABIT 1-165 
    16618  
    16619 
    16620 > log metadata #53
    16621 
    16622 No models had metadata
    16623 
    16624 > log chains #53
    16625 
    16626 Chain information for A, IF5 and L-contact #53 
    16627 --- 
    16628 Chain | Description | UniProt 
    16629 2 | 18S rRNA |   
    16630 A | 40S ribosomal protein S3 | RS3_YEAST 4-225 
    16631 AA | 60S ribosomal protein L8-A | RL8A_YEAST 24-256 
    16632 AB | 60S ribosomal protein L23-A | RL23A_YEAST 2-137 
    16633 AC | 60S ribosomal protein L36-A | RL36A_YEAST 2-100 
    16634 AD | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    16635 AE | 60S ribosomal protein L24-A | RL24A_YEAST 1-126 
    16636 AF | 60S ribosomal protein L37-A | RL37A_YEAST 2-82 
    16637 AG | 60S ribosomal protein L11-B | RL11B_YEAST 6-174 
    16638 AH | 60S ribosomal protein L25 | RL25_YEAST 22-142 
    16639 AI | 60S ribosomal protein L38 | RL38_YEAST 2-78 
    16640 AJ | 60S ribosomal protein L13-A | RL13A_YEAST 2-194 
    16641 AK | 60S ribosomal protein L26-A | RL26A_YEAST 2-126 
    16642 AL | 60S ribosomal protein L39 | RL39_YEAST 2-51 
    16643 AM | 60S ribosomal protein L14-A | RL14A_YEAST 3-138 
    16644 AN | 60S ribosomal protein L27-A | RL27A_YEAST 2-136 
    16645 AO | Ubiquitin-60S ribosomal protein L40 | RL40A_YEAST 77-128 
    16646 AP | 60S ribosomal protein L42-A | RL44A_YEAST 2-104 
    16647 AQ | 60S ribosomal protein L15-A | RL15A_YEAST 2-204 
    16648 AR | 60S ribosomal protein L28 | RL28_YEAST 2-149 
    16649 AS | 60S ribosomal protein L41-A |   
    16650 AT | 60S ribosomal protein L43-A | RL43A_YEAST 2-92 
    16651 AU | 60S ribosomal protein L16-A | RL16A_YEAST 3-199 
    16652 AV | 60S ribosomal protein L29 | RL29_YEAST 2-59 
    16653 AW | 60S ribosomal protein L2-A | RL2A_YEAST 2-252 
    16654 AX | 60S ribosomal protein L17-A | RL17A_YEAST 2-184 
    16655 AY | 60S ribosomal protein L30 | RL30_YEAST 9-104 
    16656 B | Rps5p | A0A1L4AA68_YEASX 20-225 
    16657 BA | 60S ribosomal protein L3 | RL3_YEAST 2-387 
    16658 BB | 60S ribosomal protein L18-A | RL18A_YEAST 2-186 
    16659 BC | 60S ribosomal protein L31-A | RL31A_YEAST 4-112 
    16660 BD | 60S ribosomal protein L10 | RL10_YEAST 2-219 
    16661 BE | 60S ribosomal protein L4-A | RL4A_YEAST 2-362 
    16662 BF | 60S ribosomal protein L19-A | RL19A_YEAST 2-189 
    16663 BG | 60S ribosomal protein L32 | RL32_YEAST 2-128 
    16664 BH | 60S ribosomal protein L20-A | RL20A_YEAST 2-172 
    16665 BI | 60S ribosomal protein L5 | RL5_YEAST 4-297 
    16666 BJ | 60S ribosomal protein L21-A | RL21A_YEAST 2-160 
    16667 BK | 60S ribosomal protein L33-A | RL33A_YEAST 2-107 
    16668 BL | 60S ribosomal protein L22-A | RL22A_YEAST 9-108 
    16669 BM | 60S ribosomal protein L6-B | RL6B_YEAST 2-176 
    16670 BN | 60S ribosomal protein L34-A | RL34A_YEAST 2-113 
    16671 BO | 60S ribosomal protein L7-A | RL7A_YEAST 23-244 
    16672 BP | 60S ribosomal protein L35-A | RL35A_YEAST 2-120 
    16673 BQ | 25S rRNA |   
    16674 BR | 5S rRNA |   
    16675 BS | 5.8S rRNA |   
    16676 BT | 60S ribosomal protein L1 |   
    16677 C | 40S ribosomal protein S10-A | RS10A_YEAST 1-92 
    16678 D | 40S ribosomal protein S12 | RS12_YEAST 23-143 
    16679 E | 40S ribosomal protein S15 | RS15_YEAST 13-129 
    16680 F | 40S ribosomal protein S16-A | RS16A_YEAST 3-143 
    16681 G | 40S ribosomal protein S17-B | RS17B_YEAST 2-126 
    16682 H | 40S ribosomal protein S18-A | RS18A_YEAST 2-146 
    16683 I | 40S ribosomal protein S19-A | RS19A_YEAST 2-144 
    16684 J | 40S ribosomal protein S20 | RS20_YEAST 20-119 
    16685 K | 40S ribosomal protein S25-A | RS25A_YEAST 24-105 
    16686 L | 40S ribosomal protein S28-A | RS28A_YEAST 5-67 
    16687 M | 40S ribosomal protein S29-A | RS29A_YEAST 4-56 
    16688 N | Ubiquitin-40S ribosomal protein S31 | RS31_YEAST 80-152 
    16689 O | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 5-316 
    16690 P | 40S ribosomal protein S0-A | RSSA1_YEAS1 2-207 
    16691 Q | 40S ribosomal protein S1-A | RS3A1_YEAS1 2-233 
    16692 R | 40S ribosomal protein S2 | RS2_YEAST 34-249 
    16693 S | 40S ribosomal protein S4-A | RS4A_YEAST 2-259 
    16694 T | 40S ribosomal protein S6-A | RS6A_YEAST 1-228 
    16695 U | 40S ribosomal protein S7-A | RS7A_YEAST 4-187 
    16696 V | 40S ribosomal protein S8 | A0A0J9X221_LACKL 2-199 
    16697 W | 40S ribosomal protein S9-A | RS9A_YEAST 2-185 
    16698 X | 40S ribosomal protein S11-A | RS11A_YEAST 4-145 
    16699 Y | 40S ribosomal protein S13 | RS13_YEAST 2-151 
    16700 Z | 40S ribosomal protein S14-B | RS14B_YEAST 11-137 
    16701 a | 40S ribosomal protein S21-A | RS21A_YEAST 1-87 
    16702 b | 40S ribosomal protein S22-A | RS22A_YEAST 2-130 
    16703 c | 40S ribosomal protein S23-A | RS23A_YEAST 2-145 
    16704 d | 40S ribosomal protein S24-A | RS24A_YEAST 2-135 
    16705 e | 40S ribosomal protein S26-B | RS26B_YEAST 2-98 
    16706 eI | Eukaryotic translation initiation factor 5A-1 | IF5A1_YEAST 4-157 
    16707 f | 40S ribosomal protein S27-A | RS27A_YEAST 2-82 
    16708 g | 40S ribosomal protein S30-A | RS30A_YEAST 2-61 
    16709 l | mRNA |   
    16710 m | A-site tRNA |   
    16711 n | P-site tRNA |   
    16712  
    16713 
    16714 > log metadata #58
    16715 
    16716 No models had metadata
    16717 
    16718 > log chains #58
    16719 
    16720 Chain information for Unrotated base, P #58 
    16721 --- 
    16722 Chain | Description | UniProt 
    16723 10 | 40S ribosomal protein S10 | RS10A_YEAST 1-105 
    16724 11 | 40S ribosomal protein S11 | RS11A_YEAST 1-156 
    16725 12 | 40S ribosomal protein S12 | RS12_YEAST 1-143 
    16726 13 | 40S ribosomal protein S13 | RS13_YEAST 1-151 
    16727 14 | 40S ribosomal protein S14 | RS14A_YEAST 1-137 
    16728 15 | 40S ribosomal protein S15 | RS15_YEAST 1-142 
    16729 16 | 40S ribosomal protein S16 | RS16A_YEAST 1-143 
    16730 17 | 40S ribosomal protein S17 | RS17A_YEAST 1-136 
    16731 18 | 40S ribosomal protein S18 | RS18A_YEAST 1-146 
    16732 19 | 40S ribosomal protein S19 | RS19A_YEAST 1-144 
    16733 1S | 18S ribosomal RNA |   
    16734 20 | 40S ribosomal protein S20 | RS20_YEAST 1-121 
    16735 21 | 40S ribosomal protein S21 | RS21A_YEAST 1-87 
    16736 22 | 40S ribosomal protein S22 | RS22A_YEAST 1-130 
    16737 23 | 40S ribosomal protein S23 | RS23A_YEAST 1-145 
    16738 24 | 40S ribosomal protein S24 | RS24A_YEAST 1-135 
    16739 25 | 40S ribosomal protein S25 | RS25A_YEAST 1-108 
    16740 26 | 40S ribosomal protein S26 | RS26A_YEAST 1-119 
    16741 27 | 40S ribosomal protein S27 | RS27_YEAST 1-82 
    16742 28 | 40S ribosomal protein S28 | RS28A_YEAST 1-67 
    16743 29 | 40S ribosomal protein S29 | RS29A_YEAST 1-56 
    16744 2S | 25S ribosomal RNA |   
    16745 30 | 40S ribosomal protein S30 | RS30A_YEAST 1-63 
    16746 31 | 40S ribosomal protein S31 | RS27A_YEAST 1-152 
    16747 5S | 5S ribosomal RNA |   
    16748 60 | 60S ribosomal protein L10 | RL10_YEAST 1-221 
    16749 61 | 60S ribosomal protein L11 | RL11A_YEAST 1-174 
    16750 62 | 60S ribosomal protein L12 | RL12A_YEAST 1-165 
    16751 63 | 60S ribosomal protein L13 | RL13A_YEAST 1-199 
    16752 64 | 60S ribosomal protein L14 | RL14A_YEAST 1-138 
    16753 65 | 60S ribosomal protein L15 | RL15A_YEAST 1-204 
    16754 66 | 60S ribosomal protein L16 | RL16A_YEAST 1-199 
    16755 67 | 60S ribosomal protein L17 | RL17A_YEAST 1-184 
    16756 68 | 60S ribosomal protein L18 | RL18A_YEAST 1-186 
    16757 69 | 60S ribosomal protein L19 | RL19A_YEAST 1-189 
    16758 70 | 60S ribosomal protein L20 | RL20A_YEAST 1-172 
    16759 71 | 60S ribosomal protein L21 | RL21A_YEAST 1-160 
    16760 72 | 60S ribosomal protein L22 | RL22A_YEAST 1-121 
    16761 73 | 60S ribosomal protein L23 | RL23A_YEAST 1-137 
    16762 74 | 60S ribosomal protein L24 | RL24A_YEAST 1-155 
    16763 75 | 60S ribosomal protein L25 | RL25_YEAST 1-142 
    16764 76 | 60S ribosomal protein L26 | RL26A_YEAST 1-127 
    16765 77 | 60S ribosomal protein L27 | RL27A_YEAST 1-136 
    16766 78 | 60S ribosomal protein L28 | RL28_YEAST 1-149 
    16767 79 | 60S ribosomal protein L29 | RL29_YEAST 1-59 
    16768 80 | 60S ribosomal protein L30 | RL30_YEAST 1-105 
    16769 81 | 60S ribosomal protein L31 | RL31A_YEAST 1-113 
    16770 82 | 60S ribosomal protein L32 | RL32_YEAST 1-130 
    16771 83 | 60S ribosomal protein L33 | RL33A_YEAST 1-107 
    16772 84 | 60S ribosomal protein L34 | RL34A_YEAST 1-121 
    16773 85 | 60S ribosomal protein L35 | RL35A_YEAST 1-120 
    16774 86 | 60S ribosomal protein L36 | RL36A_YEAST 1-100 
    16775 87 | 60S ribosomal protein L37 | RL37A_YEAST 1-88 
    16776 88 | 60S ribosomal protein L38 | RL38_YEAST 1-78 
    16777 89 | 60S ribosomal protein L39 | RL39_YEAST 1-51 
    16778 8S | 5.8S ribosomal RNA |   
    16779 90 | 60S ribosomal protein L40 | RL401_YEAST 1-128 
    16780 91 | 60S ribosomal protein L41 | RL41A_YEAST 1-25 
    16781 92 | 60S ribosomal protein L42 | RL44A_YEAST 1-106 
    16782 93 | 60S ribosomal protein L43 | RL43A_YEAST 1-92 
    16783 ET PT | P/E-site initiator transfer RNAfMet |   
    16784 L1 | 60S ribosomal protein L1 | RL1A_YEAST 1-217 
    16785 L2 | 60S ribosomal protein L2 | RL2A_YEAST 1-254 
    16786 L3 | 60S ribosomal protein L3 | RL3_YEAST 1-387 
    16787 L4 | 60S ribosomal protein L4 | RL4A_YEAST 1-362 
    16788 L5 | 60S ribosomal protein L5 | RL5_YEAST 1-297 
    16789 L6 | 60S ribosomal protein L6 | RL6A_YEAST 1-176 
    16790 L7 | 60S ribosomal protein L7 | RL7A_YEAST 1-244 
    16791 L8 | 60S ribosomal protein L8 | RL8A_YEAST 1-256 
    16792 L9 | 60S ribosomal protein L9 | RL9A_YEAST 1-191 
    16793 MR | messenger RNA |   
    16794 P0 | 60S acidic ribosomal protein P0 | RLA0_YEAST 1-312 
    16795 RC | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 1-319 
    16796 S0 | 40S ribosomal protein S0 | RSSA1_YEAST 1-252 
    16797 S1 | 40S ribosomal protein S1 | RS3A1_YEAST 1-255 
    16798 S2 | 40S ribosomal protein S2 | RS2_YEAST 1-254 
    16799 S3 | 40S ribosomal protein S3 | RS3_YEAST 1-240 
    16800 S4 | 40S ribosomal protein S4 | RS4A_YEAST 1-261 
    16801 S5 | 40S ribosomal protein S5 | RS5_YEAST 1-225 
    16802 S6 | 40S ribosomal protein S6 | RS6A_YEAST 1-236 
    16803 S7 | 40S ribosomal protein S7 | RS7A_YEAST 1-190 
    16804 S8 | 40S ribosomal protein S8 | RS8A_YEAST 1-200 
    16805 S9 | 40S ribosomal protein S9 | RS9A_YEAST 1-197 
    16806  
    16807 
    16808 > log metadata #59
    16809 
    16810 No models had metadata
    16811 
    16812 > log chains #59
    16813 
    16814 Chain information for Rotated base #59 
    16815 --- 
    16816 Chain | Description | UniProt 
    16817 10 | 40S ribosomal protein S10 | RS10A_YEAST 1-105 
    16818 11 | 40S ribosomal protein S11 | RS11A_YEAST 1-156 
    16819 12 | 40S ribosomal protein S12 | RS12_YEAST 1-143 
    16820 13 | 40S ribosomal protein S13 | RS13_YEAST 1-151 
    16821 14 | 40S ribosomal protein S14 | RS14A_YEAST 1-137 
    16822 15 | 40S ribosomal protein S15 | RS15_YEAST 1-142 
    16823 16 | 40S ribosomal protein S16 | RS16A_YEAST 1-143 
    16824 17 | 40S ribosomal protein S17 | RS17A_YEAST 1-136 
    16825 18 | 40S ribosomal protein S18 | RS18A_YEAST 1-146 
    16826 19 | 40S ribosomal protein S19 | RS19A_YEAST 1-144 
    16827 1S | 18S ribosomal RNA |   
    16828 20 | 40S ribosomal protein S20 | RS20_YEAST 1-121 
    16829 21 | 40S ribosomal protein S21 | RS21A_YEAST 1-87 
    16830 22 | 40S ribosomal protein S22 | RS22A_YEAST 1-130 
    16831 23 | 40S ribosomal protein S23 | RS23A_YEAST 1-145 
    16832 24 | 40S ribosomal protein S24 | RS24A_YEAST 1-135 
    16833 25 | 40S ribosomal protein S25 | RS25A_YEAST 1-108 
    16834 26 | 40S ribosomal protein S26 | RS26A_YEAST 1-119 
    16835 27 | 40S ribosomal protein S27 | RS27_YEAST 1-82 
    16836 28 | 40S ribosomal protein S28 | RS28A_YEAST 1-67 
    16837 29 | 40S ribosomal protein S29 | RS29A_YEAST 1-56 
    16838 2S | 25S ribosomal RNA |   
    16839 30 | 40S ribosomal protein S30 | RS30A_YEAST 1-63 
    16840 31 | 40S ribosomal protein S31 | RS27A_YEAST 1-152 
    16841 5S | 5S ribosomal RNA |   
    16842 60 | 60S ribosomal protein L10 | RL10_YEAST 1-221 
    16843 61 | 60S ribosomal protein L11 | RL11A_YEAST 1-174 
    16844 62 | 60S ribosomal protein L12 | RL12A_YEAST 1-165 
    16845 63 | 60S ribosomal protein L13 | RL13A_YEAST 1-199 
    16846 64 | 60S ribosomal protein L14 | RL14A_YEAST 1-138 
    16847 65 | 60S ribosomal protein L15 | RL15A_YEAST 1-204 
    16848 66 | 60S ribosomal protein L16 | RL16A_YEAST 1-199 
    16849 67 | 60S ribosomal protein L17 | RL17A_YEAST 1-184 
    16850 68 | 60S ribosomal protein L18 | RL18A_YEAST 1-186 
    16851 69 | 60S ribosomal protein L19 | RL19A_YEAST 1-189 
    16852 70 | 60S ribosomal protein L20 | RL20A_YEAST 1-172 
    16853 71 | 60S ribosomal protein L21 | RL21A_YEAST 1-160 
    16854 72 | 60S ribosomal protein L22 | RL22A_YEAST 1-121 
    16855 73 | 60S ribosomal protein L23 | RL23A_YEAST 1-137 
    16856 74 | 60S ribosomal protein L24 | RL24A_YEAST 1-155 
    16857 75 | 60S ribosomal protein L25 | RL25_YEAST 1-142 
    16858 76 | 60S ribosomal protein L26 | RL26A_YEAST 1-127 
    16859 77 | 60S ribosomal protein L27 | RL27A_YEAST 1-136 
    16860 78 | 60S ribosomal protein L28 | RL28_YEAST 1-149 
    16861 79 | 60S ribosomal protein L29 | RL29_YEAST 1-59 
    16862 80 | 60S ribosomal protein L30 | RL30_YEAST 1-105 
    16863 81 | 60S ribosomal protein L31 | RL31A_YEAST 1-113 
    16864 82 | 60S ribosomal protein L32 | RL32_YEAST 1-130 
    16865 83 | 60S ribosomal protein L33 | RL33A_YEAST 1-107 
    16866 84 | 60S ribosomal protein L34 | RL34A_YEAST 1-121 
    16867 85 | 60S ribosomal protein L35 | RL35A_YEAST 1-120 
    16868 86 | 60S ribosomal protein L36 | RL36A_YEAST 1-100 
    16869 87 | 60S ribosomal protein L37 | RL37A_YEAST 1-88 
    16870 88 | 60S ribosomal protein L38 | RL38_YEAST 1-78 
    16871 89 | 60S ribosomal protein L39 | RL39_YEAST 1-51 
    16872 8S | 5.8S ribosomal RNA |   
    16873 90 | 60S ribosomal protein L40 | RL401_YEAST 1-128 
    16874 91 | 60S ribosomal protein L41 | RL41A_YEAST 1-25 
    16875 92 | 60S ribosomal protein L42 | RL44A_YEAST 1-106 
    16876 93 | 60S ribosomal protein L43 | RL43A_YEAST 1-92 
    16877 L1 | 60S ribosomal protein L1 | RL1A_YEAST 1-217 
    16878 L2 | 60S ribosomal protein L2 | RL2A_YEAST 1-254 
    16879 L3 | 60S ribosomal protein L3 | RL3_YEAST 1-387 
    16880 L4 | 60S ribosomal protein L4 | RL4A_YEAST 1-362 
    16881 L5 | 60S ribosomal protein L5 | RL5_YEAST 1-297 
    16882 L6 | 60S ribosomal protein L6 | RL6A_YEAST 1-176 
    16883 L7 | 60S ribosomal protein L7 | RL7A_YEAST 1-244 
    16884 L8 | 60S ribosomal protein L8 | RL8A_YEAST 1-256 
    16885 L9 | 60S ribosomal protein L9 | RL9A_YEAST 1-191 
    16886 MR | messenger RNA |   
    16887 P0 | 60S acidic ribosomal protein P0 | RLA0_YEAST 1-312 
    16888 PT | P/E-site initiator transfer RNAfMet |   
    16889 RC | Guanine nucleotide-binding protein subunit beta-like protein | GBLP_YEAST 1-319 
    16890 S0 | 40S ribosomal protein S0 | RSSA1_YEAST 1-252 
    16891 S1 | 40S ribosomal protein S1 | RS3A1_YEAST 1-255 
    16892 S2 | 40S ribosomal protein S2 | RS2_YEAST 1-254 
    16893 S3 | 40S ribosomal protein S3 | RS3_YEAST 1-240 
    16894 S4 | 40S ribosomal protein S4 | RS4A_YEAST 1-261 
    16895 S5 | 40S ribosomal protein S5 | RS5_YEAST 1-225 
    16896 S6 | 40S ribosomal protein S6 | RS6A_YEAST 1-236 
    16897 S7 | 40S ribosomal protein S7 | RS7A_YEAST 1-190 
    16898 S8 | 40S ribosomal protein S8 | RS8A_YEAST 1-200 
    16899 S9 | 40S ribosomal protein S9 | RS9A_YEAST 1-197 
    16900  
    16901 
    16902 > log metadata #61
    16903 
    16904 No models had metadata
    16905 
    16906 > log chains #61
    16907 
    16908 Chain information for Swivel base, eEF2 #61 
    16909 --- 
    16910 Chain | Description | UniProt 
    16911 18S | 18S rRNA |   
    16912 25S | 25S rRNA |   
    16913 58S | 5.8S rRNA |   
    16914 AB | 5S rRNA |   
    16915 ASIT | PHE tRNA |   
    16916 PSIT | FMET tRNA |   
    16917 RACK | BJ4_G0022010.mRNA.1.CDS.1 | A0A6L1BKH8_YEASX 1-319 
    16918 eEF2 | Elongation factor 2 | A0A6A5Q7K2_YEASX 1-842 
    16919 eL13 | 60S ribosomal protein L13 | A0A6L1AF71_YEASX 1-199 
    16920 eL14 | 60S ribosomal protein L14-A | RL14A_YEAST 1-138 
    16921 eL15 | 60S ribosomal protein L15-A | RL15A_YEAST 1-204 
    16922 eL18 | BJ4_G0033900.mRNA.1.CDS.1 | A0A6L1A7F6_YEASX 1-186 
    16923 eL19 | 60S ribosomal protein L19-A | RL19A_YEAST 1-189 
    16924 eL20 | 60S ribosomal protein L20 | A0A6V8RR03_YEASX 1-172 
    16925 eL21 | BJ4_G0003770.mRNA.1.CDS.1 | A0A6L0YTI6_YEASX 1-160 
    16926 eL22 | 60S ribosomal protein L22-A | A0A6L0ZZW6_YEASX 1-121 
    16927 eL24 | 60S ribosomal protein L24-A | A0A6A5PY83_YEASX 1-155 
    16928 eL27 | 60S ribosomal protein L27 | A0A6L0ZQQ7_YEASX 1-136 
    16929 eL29 | 60S ribosomal protein L29 | A0A6A5PWR1_YEASX 1-59 
    16930 eL30 | BJ4_G0020000.mRNA.1.CDS.1 | A0A6L0ZM08_YEASX 1-105 
    16931 eL31 | BJ4_G0008090.mRNA.1.CDS.1 | A0A6L0YFR2_YEASX 1-113 
    16932 eL32 | HN1_G0013350.mRNA.1.CDS.1 | A0A7I9CD28_YEASX 1-130 
    16933 eL33 | BJ4_G0025510.mRNA.1.CDS.1 | A0A6L1C3H0_YEASX 1-107 
    16934 eL34 | 60S ribosomal protein L34-A | A0A6L0ZFW3_YEASX 1-121 
    16935 eL36 | 60S ribosomal protein L36-A | RL36A_YEAST 1-100 
    16936 eL37 | Ribosomal protein L37 | A0A6L1BIE7_YEASX 1-88 
    16937 eL38 | BJ4_G0032190.mRNA.1.CDS.1 | A0A6A5PUL8_YEASX 1-78 
    16938 eL39 | 60S ribosomal protein L39 | A0A6L1ASX0_YEASX 1-51 
    16939 eL40 | Ubiquitin | A0A6V8S9K0_YEASX 1-128 
    16940 eL41 | eL41 |   
    16941 eL42 | BJ4_G0001880.mRNA.1.CDS.1 | A0A6L1B5X0_YEASX 1-106 
    16942 eL43 | 60S ribosomal protein L43-A | RL43A_YEAST 1-92 
    16943 eL6 | 60S ribosomal protein L6 | A0A6L1BLT3_YEASX 1-176 
    16944 eL8 | 60S ribosomal protein L8-A | RL8A_YEAST 1-256 
    16945 eS1 | 40S ribosomal protein S1 | A0A6A5PRY4_YEASX 1-255 
    16946 eS10 | 40S ribosomal protein S10-A | A0A6L0ZM59_YEASX 1-105 
    16947 eS17 | BJ4_G0020710.mRNA.1.CDS.1 | A0A6L1BLL7_YEASX 1-136 
    16948 eS19 | 40S ribosomal protein S19-A | A0A6L1BWT3_YEASX 1-144 
    16949 eS21 | 40S ribosomal protein S21 | A0A6L1BDN3_YEASX 1-87 
    16950 eS24 | 40S ribosomal protein S24 | A0A6L1AUB6_YEASX 1-135 
    16951 eS25 | 40S ribosomal protein S25 | A0A6A5PZ18_YEASX 1-108 
    16952 eS26 | 40S ribosomal protein S26 | A0A6A5PUG0_YEASX 1-119 
    16953 eS27 | 40S ribosomal protein S27-A | RS27A_YEAST 1-82 
    16954 eS28 | eS28 | A0A6A5Q700_YEASX 1-67 
    16955 eS30 | 40S ribosomal protein S30 | A0A6L1A1E1_YEASX 1-63 
    16956 eS31 | Ubiquitin-40S ribosomal protein S31 | A0A6A5PU37_YEASX 1-152 
    16957 eS4 | 40S ribosomal protein S4 | A0A6L0Z3Q0_YEASX 1-261 
    16958 eS6 | 40S ribosomal protein S6 | A0A6L1AMY1_YEASX 1-236 
    16959 eS7 | 40S ribosomal protein S7 | A0A6L1ACT7_YEASX 1-190 
    16960 eS8 | 40S ribosomal protein S8 | A0A6A5Q1H1_YEASX 1-200 
    16961 mRNA | MRNA |   
    16962 uL10 | 60S acidic ribosomal protein P0 | A0A6A5PT43_YEASX 1-312 
    16963 uL11 | 60S ribosomal protein L12-B | A0A6A5Q275_YEASX 1-165 
    16964 uL13 | 60S ribosomal protein L16-A | A0A6L0ZD57_YEASX 1-199 
    16965 uL14 | 60S ribosomal protein L23-B | A0A6L0Z7E4_YEASX 1-137 
    16966 uL15 | 60S ribosomal protein L28 | A0A6L0ZDK5_YEASX 1-149 
    16967 uL16 | 60S ribosomal protein L10 | A0A6A5PUZ5_YEASX 1-221 
    16968 uL18 | 60S ribosomal protein L5 | A0A6A5Q0W8_YEASX 1-297 
    16969 uL2 | 60S ribosomal protein L2-B | A0A6L0Y8L2_YEASX 1-254 
    16970 uL22 | BJ4_G0005750.mRNA.1.CDS.1 | A0A6L1BCL1_YEASX 1-184 
    16971 uL23 | 60S ribosomal protein L25 | A0A6L0YSM0_YEASX 1-142 
    16972 uL24 | 60S ribosomal protein L26-A | RL26A_YEAST 1-127 
    16973 uL29 | BJ4_G0044250.mRNA.1.CDS.1 | A0A7I9BRN0_YEASX 1-120 
    16974 uL3 | 60S ribosomal protein L3 | A0A6A5Q627_YEASX 1-387 
    16975 uL30 | 60S ribosomal protein L7-A | A0A6V8RJA7_YEASX 1-244 
    16976 uL4 | BJ4_G0008850.mRNA.1.CDS.1 | A0A6A5Q3W0_YEASX 1-362 
    16977 uL5 | BJ4_G0027750.mRNA.1.CDS.1 | A0A6A5Q7I9_YEASX 1-174 
    16978 uL6 | 60S ribosomal protein L9-A | RL9A_YEAST 1-191 
    16979 uS10 | 40S ribosomal protein S20 | A0A6A5PVE9_YEASX 1-121 
    16980 uS11 | 40S ribosomal protein S14-A | A0A6L1AAG7_YEASX 1-137 
    16981 uS12 | 40S ribosomal protein S23 | A0A6L1B1T2_YEASX 1-145 
    16982 uS13 | 40S ribosomal protein S18-B | A0A6L1AIT6_YEASX 1-146 
    16983 uS14 | HLJ1_G0030400.mRNA.1.CDS.1 | A0A6A5PV92_YEASX 1-56 
    16984 uS15 | 40S ribosomal protein S13 | A0A6L0YFM5_YEASX 1-151 
    16985 uS17 | 40S ribosomal protein S11-B | A0A6L0YMX6_YEASX 1-156 
    16986 uS19 | 40S ribosomal protein S15 | A0A6A5Q6F2_YEASX 1-142 
    16987 uS2 | 40S ribosomal protein S0 | A0A6L0ZRP4_YEASX 1-252 
    16988 uS3 | BJ4_G0045400.mRNA.1.CDS.1 | A0A6L0ZVK6_YEASX 1-240 
    16989 uS4 | BJ4_G0026100.mRNA.1.CDS.1 | A0A7I9GPQ3_YEASX 1-197 
    16990 uS5 | 40S ribosomal protein S2 | A0A6A5PWF7_YEASX 1-254 
    16991 uS7 | Rps5p | A0A1L4AA68_YEASX 1-225 
    16992 uS8 | 40S ribosomal protein S22-A | A0A6A5PSE9_YEASX 1-130 
    16993 uS9 | BJ4_G0008010.mRNA.1.CDS.1 | A0A6L0YQ58_YEASX 1-143 
    16994  
    16995 
    16996 > select #61/18S:1-1798
    16997 
    16998 36918 atoms, 41291 bonds, 1375 pseudobonds, 1732 residues, 3 models selected 
    16999 
    17000 > select #61/25S:3-3396
    17001 
    17002 67633 atoms, 75699 bonds, 2772 pseudobonds, 3162 residues, 3 models selected 
    17003 
    17004 > select #61/58S:1-158
    17005 
    17006 3353 atoms, 3746 bonds, 83 pseudobonds, 158 residues, 2 models selected 
    17007 
    17008 > select ssu
    17009 
    17010 257320 atoms, 279588 bonds, 7349 pseudobonds, 18591 residues, 10 models
    17011 selected 
    17012 
    17013 > select subtract #61/25S
    17014 
    17015 189370 atoms, 203889 bonds, 4286 pseudobonds, 15112 residues, 10 models
    17016 selected 
    17017 
    17018 > select add #61/*S**
    17019 
    17020 296405 atoms, 319951 bonds, 7680 pseudobonds, 23042 residues, 10 models
    17021 selected 
    17022 
    17023 > select subtract #61/25S
    17024 
    17025 228455 atoms, 244252 bonds, 4496 pseudobonds, 19563 residues, 10 models
    17026 selected 
    17027 
    17028 > select subtract #61/58S
    17029 
    17030 225095 atoms, 240506 bonds, 4410 pseudobonds, 19398 residues, 10 models
    17031 selected 
    17032 
    17033 > select add #61/RACK
    17034 
    17035 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17036 selected 
    17037 
    17038 > name frozen ssu sel
    17039 
    17040 > select ~sel & ##selected
    17041 
    17042 396422 atoms, 426545 bonds, 9600 pseudobonds, 32033 residues, 10 models
    17043 selected 
    17044 
    17045 > select ssu
    17046 
    17047 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17048 selected 
    17049 
    17050 > select #61/eS6:195
    17051 
    17052 7 atoms, 6 bonds, 1 residue, 1 model selected 
    17053 
    17054 > select up
    17055 
    17056 293 atoms, 294 bonds, 35 residues, 1 model selected 
    17057 
    17058 > select up
    17059 
    17060 1766 atoms, 1790 bonds, 219 residues, 1 model selected 
    17061 
    17062 > select up
    17063 
    17064 1768 atoms, 1790 bonds, 221 residues, 1 model selected 
    17065 
    17066 > select clear
    17067 
    17068 > show #!59 models
    17069 
    17070 > show #!58 models
    17071 
    17072 > select add #58
    17073 
    17074 209136 atoms, 224719 bonds, 4513 pseudobonds, 17082 residues, 3 models
    17075 selected 
    17076 
    17077 > select add #59
    17078 
    17079 416887 atoms, 447826 bonds, 8941 pseudobonds, 34146 residues, 6 models
    17080 selected 
    17081 
    17082 > select add #61
    17083 
    17084 623953 atoms, 669540 bonds, 14010 pseudobonds, 51749 residues, 10 models
    17085 selected 
    17086 
    17087 > show sel cartoons
    17088 
    17089 > select clear
    17090 
    17091 > select ssu
    17092 
    17093 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17094 selected 
    17095 
    17096 > select ~sel & ##selected
    17097 
    17098 396422 atoms, 426545 bonds, 9600 pseudobonds, 32033 residues, 10 models
    17099 selected 
    17100 
    17101 > select ssu
    17102 
    17103 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17104 selected 
    17105 Drag select of 801 residues, 3 pseudobonds 
    17106 Drag select of 2387 residues 
    17107 Drag select of 2063 residues, 3 pseudobonds 
    17108 Drag select of 248 residues 
    17109 
    17110 > select subtract #61/eEF2
    17111 
    17112 27051 atoms, 3 pseudobonds, 2209 residues, 6 models selected 
    17113 
    17114 > select add ssu
    17115 
    17116 228416 atoms, 242995 bonds, 4410 pseudobonds, 19825 residues, 10 models
    17117 selected 
    17118 Drag select of 3023 residues, 5 pseudobonds 
    17119 
    17120 > select add ssu
    17121 
    17122 229015 atoms, 242995 bonds, 4410 pseudobonds, 19901 residues, 10 models
    17123 selected 
    17124 
    17125 > select ssu
    17126 
    17127 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17128 selected 
    17129 
    17130 > select ~sel & ##selected
    17131 
    17132 396422 atoms, 426545 bonds, 9600 pseudobonds, 32033 residues, 10 models
    17133 selected 
    17134 
    17135 > select ssu
    17136 
    17137 227531 atoms, 242995 bonds, 4410 pseudobonds, 19716 residues, 10 models
    17138 selected 
    17139 Drag select of 2627 residues, 5 pseudobonds 
    17140 
    17141 > select add ssu
    17142 
    17143 228114 atoms, 242995 bonds, 4410 pseudobonds, 19790 residues, 10 models
    17144 selected 
    17145 Drag select of 906 residues 
    17146 
    17147 > select add ssu
    17148 
    17149 229003 atoms, 242995 bonds, 4410 pseudobonds, 19899 residues, 10 models
    17150 selected 
    17151 Drag select of 1964 residues 
    17152 
    17153 > select add ssu
    17154 
    17155 228595 atoms, 242995 bonds, 4410 pseudobonds, 19852 residues, 10 models
    17156 selected 
    17157 Drag select of 3169 residues, 2 pseudobonds 
    17158 
    17159 > select add ssu
    17160 
    17161 228447 atoms, 242995 bonds, 4410 pseudobonds, 19827 residues, 10 models
    17162 selected 
    17163 
    17164 > name frozen ssu sel
    17165 
    17166 > select clear
    17167 
    17168 > select add ssu
    17169 
    17170 228447 atoms, 243908 bonds, 4410 pseudobonds, 19827 residues, 10 models
    17171 selected 
    17172 
    17173 > hide sel cartoons
    17174 
    17175 > show sel atoms
    17176 
    17177 > hide sel atoms
    17178 
    17179 > show sel cartoons
    17180 
    17181 > hide sel atoms
    17182 
    17183 > show sel atoms
    17184 
    17185 > hide sel atoms
    17186 
    17187 > hide sel cartoons
    17188 
    17189 > show sel cartoons
    17190 
    17191 > select subtract #61/eEF2
    17192 
    17193 228447 atoms, 243908 bonds, 4410 pseudobonds, 19827 residues, 10 models
    17194 selected 
    17195 
    17196 > name frozen ssu sel
    17197 
    17198 Drag select of 1307 residues, 2 pseudobonds 
    17199 
    17200 > select add #61/eEF2
    17201 
    17202 23142 atoms, 6729 bonds, 9 pseudobonds, 2156 residues, 5 models selected 
    17203 
    17204 > select subb #61/eEF2
    17205 
    17206 Expected an objects specifier or a keyword 
    17207 
    17208 > select subtract #61/eEF2
    17209 
    17210 16535 atoms, 2 pseudobonds, 1307 residues, 4 models selected 
    17211 
    17212 > select add ssu
    17213 
    17214 229015 atoms, 243908 bonds, 4410 pseudobonds, 19899 residues, 10 models
    17215 selected 
    17216 
    17217 > select subtract #61/ASIT
    17218 
    17219 227378 atoms, 242081 bonds, 4374 pseudobonds, 19822 residues, 10 models
    17220 selected 
    17221 
    17222 > name frozen ssu sel
    17223 
    17224 > hide sel cartoons
    17225 
    17226 > show sel cartoons
    17227 
    17228 > select subtract #59/PT
    17229 
    17230 227378 atoms, 242081 bonds, 4374 pseudobonds, 19822 residues, 10 models
    17231 selected 
    17232 
    17233 > select subtract #61/PSIT
    17234 
    17235 225728 atoms, 240245 bonds, 4308 pseudobonds, 19739 residues, 10 models
    17236 selected 
    17237 
    17238 > name frozen ssu sel
    17239 
    17240 > color (#!58-59,61 & sel) red
    17241 
    17242 > undo
    17243 
    17244 > select ~sel & ##selected
    17245 
    17246 398225 atoms, 428726 bonds, 9702 pseudobonds, 32010 residues, 10 models
    17247 selected 
    17248 
    17249 > select subtract #61/eEF2
    17250 
    17251 391618 atoms, 421997 bonds, 9693 pseudobonds, 31161 residues, 10 models
    17252 selected 
    17253 
    17254 > select subtract #61/ASIT
    17255 
    17256 389981 atoms, 420170 bonds, 9644 pseudobonds, 31084 residues, 10 models
    17257 selected 
    17258 
    17259 > select subtract #61/PSIT
    17260 
    17261 388331 atoms, 418334 bonds, 9570 pseudobonds, 31001 residues, 10 models
    17262 selected 
    17263 
    17264 > select subtract #58/PT
    17265 
    17266 386687 atoms, 416498 bonds, 9489 pseudobonds, 30924 residues, 10 models
    17267 selected 
    17268 
    17269 > select subtract #59/PT
    17270 
    17271 385043 atoms, 414662 bonds, 9412 pseudobonds, 30847 residues, 10 models
    17272 selected 
    17273 
    17274 > select subtract #58/ET
    17275 
    17276 383399 atoms, 412826 bonds, 9335 pseudobonds, 30770 residues, 10 models
    17277 selected 
    17278 
    17279 > name frozen lsu sel
    17280 
    17281 > color (#!58-59,61 & sel) red
    17282 
    17283 > undo
    17284 
    17285 > select ssu
    17286 
    17287 225728 atoms, 240814 bonds, 4308 pseudobonds, 19739 residues, 10 models
    17288 selected 
    17289 
    17290 > color (#!58-59,61 & sel) #ffffffff
    17291 
    17292 > color (#!58-59,61 & sel) #ebebebff
    17293 
    17294 > color (#!58-59,61 & sel) #c0c0c0ff
    17295 
    17296 > color (#!58-59,61 & sel) #d6d6d6ff
    17297 
    17298 > color (#!58-59,61 & sel) #c0c0c0ff
    17299 
    17300 > select lsu
    17301 
    17302 383399 atoms, 412826 bonds, 9335 pseudobonds, 30770 residues, 10 models
    17303 selected 
    17304 
    17305 > color (#!58-59,61 & sel) #ebebebff
    17306 
    17307 > select clear
    17308 
    17309 > hide #!58 models
    17310 
    17311 > hide #!59 models
    17312 
    17313 > hide #!61 models
    17314 
    17315 > show #!53 models
    17316 
    17317 > show #!52 models
    17318 
    17319 > show #!51 models
    17320 
    17321 > show #!50 models
    17322 
    17323 > color #50 silver models
    17324 
    17325 > hide #!50 models
    17326 
    17327 > show #!58 models
    17328 
    17329 > hide #!58 models
    17330 
    17331 > select #53/BT:7
    17332 
    17333 5 atoms, 4 bonds, 1 residue, 1 model selected 
    17334 
    17335 > select up
    17336 
    17337 75 atoms, 74 bonds, 15 residues, 1 model selected 
    17338 
    17339 > select up
    17340 
    17341 1050 atoms, 1049 bonds, 210 residues, 1 model selected 
    17342 
    17343 > color #50 #ebebebff models
    17344 
    17345 > show #!58 models
    17346 
    17347 > show #!59 models
    17348 
    17349 > show #!61 models
    17350 
    17351 > hide #!58 models
    17352 
    17353 > hide #!59 models
    17354 
    17355 > hide #!61 models
    17356 
    17357 > color sel #ffffffff
    17358 
    17359 > color sel #ebebebff
    17360 
    17361 > select #52/jj:134
    17362 
    17363 11 atoms, 10 bonds, 1 residue, 1 model selected 
    17364 
    17365 > select up
    17366 
    17367 103 atoms, 104 bonds, 13 residues, 1 model selected 
    17368 
    17369 > select up
    17370 
    17371 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    17372 
    17373 > color sel #011993ff
    17374 
    17375 > color sel #0096ffff
    17376 
    17377 > color sel #7a81ffff
    17378 
    17379 > color sel #0096ffff
    17380 
    17381 > select #52/ii:5
    17382 
    17383 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17384 
    17385 > select up
    17386 
    17387 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17388 
    17389 > select up
    17390 
    17391 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    17392 
    17393 > select down
    17394 
    17395 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17396 
    17397 > color sel orange red
    17398 
    17399 > color sel red
    17400 
    17401 > select #53/m:63
    17402 
    17403 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17404 
    17405 > select up
    17406 
    17407 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    17408 
    17409 > select up
    17410 
    17411 204962 atoms, 220182 bonds, 16898 residues, 1 model selected 
    17412 
    17413 > select down
    17414 
    17415 1611 atoms, 1799 bonds, 76 residues, 1 model selected 
    17416 
    17417 > color sel #ff7e79ff
    17418 
    17419 > select #52/ii:63
    17420 
    17421 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17422 
    17423 > select up
    17424 
    17425 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17426 
    17427 > color sel #ff2600ff
    17428 
    17429 > select #52/jj:138
    17430 
    17431 8 atoms, 7 bonds, 1 residue, 1 model selected 
    17432 
    17433 > select up
    17434 
    17435 103 atoms, 104 bonds, 13 residues, 1 model selected 
    17436 
    17437 > select up
    17438 
    17439 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    17440 
    17441 > color sel #76d6ffff
    17442 
    17443 > color sel #0096ffff
    17444 
    17445 > select #51/q3:52
    17446 
    17447 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17448 
    17449 > select up
    17450 
    17451 1579 atoms, 1765 bonds, 74 residues, 1 model selected 
    17452 
    17453 > color sel #ff9300ff
    17454 
    17455 > color sel #ffd479ff
    17456 
    17457 > select #52/2:54
    17458 
    17459 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17460 
    17461 > select up
    17462 
    17463 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17464 
    17465 > color sel #fffc79ff
    17466 
    17467 > select #53/eI:71
    17468 
    17469 9 atoms, 8 bonds, 1 residue, 1 model selected 
    17470 
    17471 > select up
    17472 
    17473 64 atoms, 64 bonds, 8 residues, 1 model selected 
    17474 
    17475 > select up
    17476 
    17477 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    17478 
    17479 > color sel #ff85ffff
    17480 
    17481 > color sel #ff8ad8ff
    17482 
    17483 > color sel #ff85ffff
    17484 
    17485 > color sel #d783ffff
    17486 
    17487 > select #51/33:44
    17488 
    17489 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17490 
    17491 > select up
    17492 
    17493 1604 atoms, 1795 bonds, 75 residues, 1 model selected 
    17494 
    17495 > color sel #73fa79ff
    17496 
    17497 > select #52/3:30
    17498 
    17499 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17500 
    17501 > select up
    17502 
    17503 1593 atoms, 1779 bonds, 75 residues, 1 model selected 
    17504 
    17505 > color sel #76d6ffff
    17506 
    17507 > select clear
    17508 
    17509 > select #52/ii:63
    17510 
    17511 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17512 
    17513 > select up
    17514 
    17515 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17516 
    17517 > color sel #ff7e79ff
    17518 
    17519 > color sel #ffd479ff
    17520 
    17521 > color sel #ff7e79ff
    17522 
    17523 > color sel #ff2600ff
    17524 
    17525 > color sel #941100ff
    17526 
    17527 > color sel #ff8ad8ff
    17528 
    17529 > select #53/eI:72
    17530 
    17531 8 atoms, 7 bonds, 1 residue, 1 model selected 
    17532 
    17533 > select up
    17534 
    17535 64 atoms, 64 bonds, 8 residues, 1 model selected 
    17536 
    17537 > select up
    17538 
    17539 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    17540 
    17541 > color sel #d783ffff
    17542 
    17543 > color sel #7a81ffff
    17544 
    17545 > color sel #ff85ffff
    17546 
    17547 > select #52/ii:4
    17548 
    17549 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17550 
    17551 > select up
    17552 
    17553 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17554 
    17555 > color sel #ff8ad8ff
    17556 
    17557 > color sel #ff2f92ff
    17558 
    17559 > color sel #ff40ffff
    17560 
    17561 > color sel #ff8ad8ff
    17562 
    17563 > color sel #ff7e79ff
    17564 
    17565 > color sel #ff9300ff
    17566 
    17567 > color sel #ff2600ff
    17568 
    17569 > color sel #ff9300ff
    17570 
    17571 > color sel #ff2600ff
    17572 
    17573 > color sel #ff2f92ff
    17574 
    17575 > color sel #ff2600ff
    17576 
    17577 > select #53/eI:56
    17578 
    17579 9 atoms, 8 bonds, 1 residue, 1 model selected 
    17580 
    17581 > select up
    17582 
    17583 67 atoms, 67 bonds, 9 residues, 1 model selected 
    17584 
    17585 > select up
    17586 
    17587 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    17588 
    17589 > color sel #ff40ffff
    17590 
    17591 > show #!58 models
    17592 
    17593 > show #!50 models
    17594 
    17595 > hide #!50 models
    17596 
    17597 > show #!50 models
    17598 
    17599 > hide #!50 models
    17600 
    17601 > show #!50 models
    17602 
    17603 > hide #!50 models
    17604 
    17605 > save
    17606 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/202602_subunitcolouring.cxs
    17607 > includeMaps true
    17608 
    17609 > select clear
    17610 
    17611 > show #!59 models
    17612 
    17613 > show #!61 models
    17614 
    17615 > hide #!61 models
    17616 
    17617 > hide #!59 models
    17618 
    17619 > show #!59 models
    17620 
    17621 > show #!61 models
    17622 
    17623 > hide #!51 models
    17624 
    17625 > hide #!52 models
    17626 
    17627 > hide #!53 models
    17628 
    17629 > show #!51 models
    17630 
    17631 > hide #!51 models
    17632 
    17633 > select #58/PT:48
    17634 
    17635 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17636 
    17637 > select add #61/ASIT:47
    17638 
    17639 40 atoms, 42 bonds, 2 residues, 2 models selected 
    17640 
    17641 > select up
    17642 
    17643 3280 atoms, 3663 bonds, 153 residues, 2 models selected 
    17644 
    17645 > color sel #fffc79ff
    17646 
    17647 > show #!52 models
    17648 
    17649 > hide #!52 models
    17650 
    17651 > hide #!59 models
    17652 
    17653 > show #!59 models
    17654 
    17655 > hide #!59 models
    17656 
    17657 > show #!59 models
    17658 
    17659 > hide #!59 models
    17660 
    17661 > show #!51 models
    17662 
    17663 > show #!59 models
    17664 
    17665 > select #59/PT:52
    17666 
    17667 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17668 
    17669 > select up
    17670 
    17671 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    17672 
    17673 > color sel #73fa79ff
    17674 
    17675 > hide #!59 models
    17676 
    17677 > select clear
    17678 
    17679 > show #!52 models
    17680 
    17681 > hide #!61 models
    17682 
    17683 > show #!61 models
    17684 
    17685 > select #58/ET:46
    17686 
    17687 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17688 
    17689 > select add #52/3:46
    17690 
    17691 46 atoms, 50 bonds, 2 residues, 2 models selected 
    17692 
    17693 > hide #!51 models
    17694 
    17695 > hide #!52 models
    17696 
    17697 > show #!52 models
    17698 
    17699 > hide #!52 models
    17700 
    17701 > show #!52 models
    17702 
    17703 > select #52/3:46
    17704 
    17705 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17706 
    17707 > select #58/ET:46
    17708 
    17709 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17710 
    17711 > select add #61/PSIT:46
    17712 
    17713 46 atoms, 50 bonds, 2 residues, 2 models selected 
    17714 
    17715 > select up
    17716 
    17717 3288 atoms, 3672 bonds, 154 residues, 2 models selected 
    17718 
    17719 > color sel #00fdffff
    17720 
    17721 > color sel #73fdffff
    17722 
    17723 > color sel #76d6ffff
    17724 
    17725 > select clear
    17726 
    17727 > show #!59 models
    17728 
    17729 > show #!53 models
    17730 
    17731 > show #!51 models
    17732 
    17733 > save
    17734 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/Old_Ribofigs/202602_subunitcolouring.cxs
    17735 > includeMaps true
    17736 
    17737 ——— End of log from Wed Feb 4 15:33:49 2026 ———
    17738 
    17739 > view name session-start
    17740 
    17741 opened ChimeraX session 
    17742 
    17743 > select #52/jj:377
    17744 
    17745 9 atoms, 8 bonds, 1 residue, 1 model selected 
    17746 
    17747 > select up
    17748 
    17749 111 atoms, 112 bonds, 14 residues, 1 model selected 
    17750 
    17751 > select up
    17752 
    17753 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    17754 
    17755 > color sel #76d6ffff
    17756 
    17757 > select #58/ET:45
    17758 
    17759 22 atoms, 24 bonds, 1 residue, 1 model selected 
    17760 
    17761 > select add #52/3:44
    17762 
    17763 45 atoms, 49 bonds, 2 residues, 2 models selected 
    17764 
    17765 > select add #61/PSIT:46
    17766 
    17767 68 atoms, 74 bonds, 3 residues, 3 models selected 
    17768 
    17769 > select up
    17770 
    17771 4881 atoms, 5451 bonds, 229 residues, 3 models selected 
    17772 
    17773 > color sel #0096ffff
    17774 
    17775 > select #53/eI:58
    17776 
    17777 10 atoms, 10 bonds, 1 residue, 1 model selected 
    17778 
    17779 > select up
    17780 
    17781 67 atoms, 67 bonds, 9 residues, 1 model selected 
    17782 
    17783 > select up
    17784 
    17785 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    17786 
    17787 > color sel #ff85ffff
    17788 
    17789 > color sel #ff8ad8ff
    17790 
    17791 > color sel #d783ffff
    17792 
    17793 > select #52/jj:401
    17794 
    17795 8 atoms, 7 bonds, 1 residue, 1 model selected 
    17796 
    17797 > select up
    17798 
    17799 63 atoms, 63 bonds, 9 residues, 1 model selected 
    17800 
    17801 > select up
    17802 
    17803 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    17804 
    17805 > show sel atoms
    17806 
    17807 > select up
    17808 
    17809 3491 atoms, 3565 bonds, 444 residues, 1 model selected 
    17810 
    17811 > show sel atoms
    17812 
    17813 > color sel #76d6ffff
    17814 
    17815 > hide sel atoms
    17816 
    17817 > select #61/eEF2:731
    17818 
    17819 7 atoms, 6 bonds, 1 residue, 1 model selected 
    17820 
    17821 > select up
    17822 
    17823 114 atoms, 116 bonds, 14 residues, 1 model selected 
    17824 
    17825 > select up
    17826 
    17827 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    17828 
    17829 > color sel #73fa79ff
    17830 
    17831 > select #59/PT:52
    17832 
    17833 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17834 
    17835 > select #59/PT:28
    17836 
    17837 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17838 
    17839 > select add #51/33:26
    17840 
    17841 40 atoms, 42 bonds, 2 residues, 2 models selected 
    17842 
    17843 > color sel #00f900ff
    17844 
    17845 > select up
    17846 
    17847 3248 atoms, 3631 bonds, 152 residues, 2 models selected 
    17848 
    17849 > color sel #009051ff
    17850 
    17851 > color sel #008f00ff
    17852 
    17853 > color sel #00f900ff
    17854 
    17855 > color sel #008f00ff
    17856 
    17857 > color sel #00f900ff
    17858 
    17859 > color sel #73fa79ff
    17860 
    17861 > color sel #73fcd6ff
    17862 
    17863 > color sel #73fa79ff
    17864 
    17865 > color sel #d4fb79ff
    17866 
    17867 > color sel #73fa79ff
    17868 
    17869 > select #61/eEF2:686
    17870 
    17871 7 atoms, 6 bonds, 1 residue, 1 model selected 
    17872 
    17873 > select up
    17874 
    17875 64 atoms, 63 bonds, 8 residues, 1 model selected 
    17876 
    17877 > select up
    17878 
    17879 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    17880 
    17881 > color sel #4f8f00ff
    17882 
    17883 > color sel #008f00ff
    17884 
    17885 > color sel #4f8f00ff
    17886 
    17887 > select clear
    17888 
    17889 > select #52/ii:16
    17890 
    17891 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17892 
    17893 > select up
    17894 
    17895 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17896 
    17897 > color sel #ff7e79ff
    17898 
    17899 > color sel #ff6666ff
    17900 
    17901 > color sel #cc3300ff
    17902 
    17903 > select clear
    17904 
    17905 > select #52/ii:52
    17906 
    17907 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17908 
    17909 > select up
    17910 
    17911 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17912 
    17913 > color sel #ff3333ff
    17914 
    17915 > select clear
    17916 
    17917 > select #61/eEF2:505
    17918 
    17919 7 atoms, 6 bonds, 1 residue, 1 model selected 
    17920 
    17921 > select #52/ii:52
    17922 
    17923 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17924 
    17925 > select up
    17926 
    17927 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17928 
    17929 > color sel #ff6666ff
    17930 
    17931 > select clear
    17932 
    17933 > select #61/eEF2:530
    17934 
    17935 7 atoms, 6 bonds, 1 residue, 1 model selected 
    17936 
    17937 > select #52/ii:52
    17938 
    17939 20 atoms, 21 bonds, 1 residue, 1 model selected 
    17940 
    17941 > select up
    17942 
    17943 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    17944 
    17945 > color sel #cc3333ff
    17946 
    17947 > select clear
    17948 
    17949 > save
    17950 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/Ribofigs/202602_subunitcolouring.cxs
    17951 > includeMaps true
    17952 
    17953 > open
    17954 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/60S/MultiPostProcessor_PPout_60S.mrc
    17955 
    17956 Opened MultiPostProcessor_PPout_60S.mrc as #1, grid size 128,128,128, pixel 4,
    17957 shown at level 0.845, step 1, values float32 
    17958 
    17959 > open
    17960 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Decoding/MultiPostProcessor_PPout_Decoding.mrc
    17961 
    17962 Opened MultiPostProcessor_PPout_Decoding.mrc as #2, grid size 128,128,128,
    17963 pixel 4, shown at level 0.896, step 1, values float32 
    17964 
    17965 > open
    17966 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Hibernating/MultiPostProcessor_PPout_Hibernating.mrc
    17967 
    17968 Opened MultiPostProcessor_PPout_Hibernating.mrc as #3, grid size 128,128,128,
    17969 pixel 4, shown at level 0.916, step 1, values float32 
    17970 
    17971 > open
    17972 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Int_Post/MultiPostProcessor_PPout_Int_Post.mrc
    17973 
    17974 Opened MultiPostProcessor_PPout_Int_Post.mrc as #4, grid size 128,128,128,
    17975 pixel 4, shown at level 0.889, step 1, values float32 
    17976 
    17977 > open
    17978 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Post/MultiPostProcessor_PPout_Post.mrc
    17979 
    17980 Opened MultiPostProcessor_PPout_Post.mrc as #5, grid size 128,128,128, pixel
    17981 4, shown at level 0.859, step 1, values float32 
    17982 
    17983 > open
    17984 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Rotated/MultiPostProcessor_PPout_Rotated.mrc
    17985 
    17986 Opened MultiPostProcessor_PPout_Rotated.mrc as #6, grid size 128,128,128,
    17987 pixel 4, shown at level 0.846, step 1, values float32 
    17988 
    17989 > open
    17990 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Translocating/MultiPostProcessor_PPout_Translocating.mrc
    17991 
    17992 Opened MultiPostProcessor_PPout_Translocating.mrc as #7, grid size
    17993 128,128,128, pixel 4, shown at level 0.871, step 1, values float32 
    17994 
    17995 > open
    17996 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/UnPre_cEF2/MultiPostProcessor_PPout_UnPre_cEF2.mrc
    17997 
    17998 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc as #8, grid size 128,128,128,
    17999 pixel 4, shown at level 0.91, step 1, values float32 
    18000 
    18001 > open
    18002 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/UnPre_none/MultiPostProcessor_PPout_UnPre_none.mrc
    18003 
    18004 Opened MultiPostProcessor_PPout_UnPre_none.mrc as #9, grid size 128,128,128,
    18005 pixel 4, shown at level 0.898, step 1, values float32 
    18006 
    18007 > close #1-9
    18008 
    18009 > select lsu
    18010 
    18011 383399 atoms, 412826 bonds, 9335 pseudobonds, 30770 residues, 10 models
    18012 selected 
    18013 
    18014 > color (#!58-59,61 & sel) #d6d6d6ff
    18015 
    18016 > select ssu
    18017 
    18018 225728 atoms, 240814 bonds, 4308 pseudobonds, 19739 residues, 10 models
    18019 selected 
    18020 
    18021 > color (#!58-59,61 & sel) #a9a9a9ff
    18022 
    18023 > select clear
    18024 
    18025 > save
    18026 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/Ribofigs/202602_subunitcolouring.cxs
    18027 > includeMaps true
    18028 
    18029 > open
    18030 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/60S/MultiPostProcessor_PPout_60S.mrc
    18031 
    18032 Opened MultiPostProcessor_PPout_60S.mrc as #1, grid size 128,128,128, pixel 4,
    18033 shown at level 0.845, step 1, values float32 
    18034 
    18035 > open
    18036 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Decoding/MultiPostProcessor_PPout_Decoding.mrc
    18037 
    18038 Opened MultiPostProcessor_PPout_Decoding.mrc as #2, grid size 128,128,128,
    18039 pixel 4, shown at level 0.896, step 1, values float32 
    18040 
    18041 > open
    18042 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Hibernating/MultiPostProcessor_PPout_Hibernating.mrc
    18043 
    18044 Opened MultiPostProcessor_PPout_Hibernating.mrc as #3, grid size 128,128,128,
    18045 pixel 4, shown at level 0.916, step 1, values float32 
    18046 
    18047 > open
    18048 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Int_Post/MultiPostProcessor_PPout_Int_Post.mrc
    18049 
    18050 Opened MultiPostProcessor_PPout_Int_Post.mrc as #4, grid size 128,128,128,
    18051 pixel 4, shown at level 0.889, step 1, values float32 
    18052 
    18053 > open
    18054 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Post/MultiPostProcessor_PPout_Post.mrc
    18055 
    18056 Opened MultiPostProcessor_PPout_Post.mrc as #5, grid size 128,128,128, pixel
    18057 4, shown at level 0.859, step 1, values float32 
    18058 
    18059 > open
    18060 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Rotated/MultiPostProcessor_PPout_Rotated.mrc
    18061 
    18062 Opened MultiPostProcessor_PPout_Rotated.mrc as #6, grid size 128,128,128,
    18063 pixel 4, shown at level 0.846, step 1, values float32 
    18064 
    18065 > open
    18066 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/Translocating/MultiPostProcessor_PPout_Translocating.mrc
    18067 
    18068 Opened MultiPostProcessor_PPout_Translocating.mrc as #7, grid size
    18069 128,128,128, pixel 4, shown at level 0.871, step 1, values float32 
    18070 
    18071 > open
    18072 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/UnPre_cEF2/MultiPostProcessor_PPout_UnPre_cEF2.mrc
    18073 
    18074 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc as #8, grid size 128,128,128,
    18075 pixel 4, shown at level 0.91, step 1, values float32 
    18076 
    18077 > open
    18078 > /Users/campbell/Desktop/workspaces/hd_tn298-Comb_2025/MultiPostProcessor/20260204_SpeciesForM/UnPre_none/MultiPostProcessor_PPout_UnPre_none.mrc
    18079 
    18080 Opened MultiPostProcessor_PPout_UnPre_none.mrc as #9, grid size 128,128,128,
    18081 pixel 4, shown at level 0.898, step 1, values float32 
    18082 
    18083 > volume level 0.6
    18084 
    18085 > fitmap #1-49 inMap #50 eachModel true
    18086 
    18087 Fit map MultiPostProcessor_PPout_60S.mrc in map Stable_60S.mrc using 45019
    18088 points 
    18089 correlation = 0.9792, correlation about mean = 0.6732, overlap = 3.084e+04 
    18090 steps = 60, shift = 11.2, angle = 0.347 degrees 
    18091  
    18092 Position of MultiPostProcessor_PPout_60S.mrc (#1) relative to Stable_60S.mrc
    18093 (#50) coordinates: 
    18094 Matrix rotation and translation 
    18095 0.99998258 0.00350909 0.00474719 -9.58200270 
    18096 -0.00350249 0.99999289 -0.00139727 6.38704110 
    18097 -0.00475206 0.00138062 0.99998776 -5.53422025 
    18098 Axis 0.22902732 0.78317944 -0.57807997 
    18099 Axis point -439.81020091 0.00000000 2306.64258437 
    18100 Rotation angle (degrees) 0.34747506 
    18101 Shift along axis 6.00688077 
    18102  
    18103 Fit map MultiPostProcessor_PPout_Decoding.mrc in map Stable_60S.mrc using
    18104 58200 points 
    18105 correlation = 0.7973, correlation about mean = 0.3491, overlap = 2.848e+04 
    18106 steps = 64, shift = 1.73, angle = 1.23 degrees 
    18107  
    18108 Position of MultiPostProcessor_PPout_Decoding.mrc (#2) relative to
    18109 Stable_60S.mrc (#50) coordinates: 
    18110 Matrix rotation and translation 
    18111 0.99978338 0.01754097 0.01120287 -7.63491730 
    18112 -0.01760124 0.99983102 0.00530345 4.59034830 
    18113 -0.01110795 -0.00549948 0.99992318 3.59329984 
    18114 Axis -0.25120034 0.51879292 -0.81716112 
    18115 Axis point 216.60492651 418.41715509 0.00000000 
    18116 Rotation angle (degrees) 1.23210437 
    18117 Shift along axis 1.36302911 
    18118  
    18119 Fit map MultiPostProcessor_PPout_Hibernating.mrc in map Stable_60S.mrc using
    18120 61332 points 
    18121 correlation = 0.8013, correlation about mean = 0.3742, overlap = 2.998e+04 
    18122 steps = 116, shift = 2.08, angle = 0.355 degrees 
    18123  
    18124 Position of MultiPostProcessor_PPout_Hibernating.mrc (#3) relative to
    18125 Stable_60S.mrc (#50) coordinates: 
    18126 Matrix rotation and translation 
    18127 0.99998540 0.00390522 0.00373423 -2.77891118 
    18128 -0.00391658 0.99998771 0.00304124 2.06401939 
    18129 -0.00372231 -0.00305582 0.99998840 1.37709525 
    18130 Axis -0.49138688 0.60095388 -0.63039143 
    18131 Axis point 258.80057658 493.89313962 0.00000000 
    18132 Rotation angle (degrees) 0.35546108 
    18133 Shift along axis 1.73779192 
    18134  
    18135 Fit map MultiPostProcessor_PPout_Int_Post.mrc in map Stable_60S.mrc using
    18136 58966 points 
    18137 correlation = 0.8005, correlation about mean = 0.3796, overlap = 2.858e+04 
    18138 steps = 96, shift = 1.92, angle = 0.711 degrees 
    18139  
    18140 Position of MultiPostProcessor_PPout_Int_Post.mrc (#4) relative to
    18141 Stable_60S.mrc (#50) coordinates: 
    18142 Matrix rotation and translation 
    18143 0.99992955 0.01058124 0.00537799 -4.70979073 
    18144 -0.01060077 0.99993727 0.00361524 3.44441183 
    18145 -0.00533940 -0.00367200 0.99997900 2.04384340 
    18146 Axis -0.29345807 0.43159025 -0.85300189 
    18147 Axis point 276.64661390 415.74052028 0.00000000 
    18148 Rotation angle (degrees) 0.71141168 
    18149 Shift along axis 1.12529839 
    18150  
    18151 Fit map MultiPostProcessor_PPout_Post.mrc in map Stable_60S.mrc using 58643
    18152 points 
    18153 correlation = 0.8006, correlation about mean = 0.3306, overlap = 2.743e+04 
    18154 steps = 76, shift = 1.92, angle = 1.04 degrees 
    18155  
    18156 Position of MultiPostProcessor_PPout_Post.mrc (#5) relative to Stable_60S.mrc
    18157 (#50) coordinates: 
    18158 Matrix rotation and translation 
    18159 0.99985047 0.01308904 0.01130090 -6.69830250 
    18160 -0.01314845 0.99990004 0.00519936 3.58665015 
    18161 -0.01123172 -0.00534717 0.99992263 3.38993247 
    18162 Axis -0.29168425 0.62318224 -0.72564743 
    18163 Axis point 187.21836504 475.35711722 0.00000000 
    18164 Rotation angle (degrees) 1.03588809 
    18165 Shift along axis 1.72903021 
    18166  
    18167 Fit map MultiPostProcessor_PPout_Rotated.mrc in map Stable_60S.mrc using 56551
    18168 points 
    18169 correlation = 0.8023, correlation about mean = 0.3251, overlap = 2.654e+04 
    18170 steps = 84, shift = 2.19, angle = 0.302 degrees 
    18171  
    18172 Position of MultiPostProcessor_PPout_Rotated.mrc (#6) relative to
    18173 Stable_60S.mrc (#50) coordinates: 
    18174 Matrix rotation and translation 
    18175 0.99999884 0.00074899 -0.00132618 -1.12946951 
    18176 -0.00075568 0.99998698 -0.00504576 3.16815051 
    18177 0.00132238 0.00504675 0.99998639 -1.95276683 
    18178 Axis 0.95734523 -0.25123442 -0.14272831 
    18179 Axis point 0.00000000 433.61915370 547.17316851 
    18180 Rotation angle (degrees) 0.30201266 
    18181 Shift along axis -1.59852561 
    18182  
    18183 Fit map MultiPostProcessor_PPout_Translocating.mrc in map Stable_60S.mrc using
    18184 55898 points 
    18185 correlation = 0.7969, correlation about mean = 0.3519, overlap = 2.701e+04 
    18186 steps = 80, shift = 1.98, angle = 0.548 degrees 
    18187  
    18188 Position of MultiPostProcessor_PPout_Translocating.mrc (#7) relative to
    18189 Stable_60S.mrc (#50) coordinates: 
    18190 Matrix rotation and translation 
    18191 0.99997953 0.00284971 -0.00572847 -0.55014406 
    18192 -0.00289036 0.99997062 -0.00710002 3.98692410 
    18193 0.00570806 0.00711643 0.99995839 -3.14064689 
    18194 Axis 0.74325810 -0.59791934 -0.30009974 
    18195 Axis point 0.00000000 521.70794826 403.56130181 
    18196 Rotation angle (degrees) 0.54796266 
    18197 Shift along axis -1.85025072 
    18198  
    18199 Fit map MultiPostProcessor_PPout_UnPre_cEF2.mrc in map Stable_60S.mrc using
    18200 58314 points 
    18201 correlation = 0.7884, correlation about mean = 0.3212, overlap = 2.842e+04 
    18202 steps = 64, shift = 2.57, angle = 0.969 degrees 
    18203  
    18204 Position of MultiPostProcessor_PPout_UnPre_cEF2.mrc (#8) relative to
    18205 Stable_60S.mrc (#50) coordinates: 
    18206 Matrix rotation and translation 
    18207 0.99992462 0.00202807 0.01210961 -4.04107372 
    18208 -0.00216874 0.99993019 0.01161481 0.12051900 
    18209 -0.01208521 -0.01164020 0.99985922 5.39644993 
    18210 Axis -0.68760953 0.71539799 -0.12409213 
    18211 Axis point 466.60515624 -0.00000000 211.96194507 
    18212 Rotation angle (degrees) 0.96892031 
    18213 Shift along axis 2.19524288 
    18214  
    18215 Fit map MultiPostProcessor_PPout_UnPre_none.mrc in map Stable_60S.mrc using
    18216 58116 points 
    18217 correlation = 0.7946, correlation about mean = 0.3249, overlap = 2.832e+04 
    18218 steps = 96, shift = 2.21, angle = 0.87 degrees 
    18219  
    18220 Position of MultiPostProcessor_PPout_UnPre_none.mrc (#9) relative to
    18221 Stable_60S.mrc (#50) coordinates: 
    18222 Matrix rotation and translation 
    18223 0.99991844 0.00671877 0.01086139 -4.97075525 
    18224 -0.00680768 0.99994346 0.00816940 1.70192430 
    18225 -0.01080589 -0.00824267 0.99990764 4.18998849 
    18226 Axis -0.54056373 0.71365443 -0.44552016 
    18227 Axis point 468.57087156 0.00000000 359.89805086 
    18228 Rotation angle (degrees) 0.86981277 
    18229 Shift along axis 2.03487150 
    18230  
    18231 
    18232 > hide #!2 models
    18233 
    18234 > hide #!3 models
    18235 
    18236 > hide #!4 models
    18237 
    18238 > hide #!6 models
    18239 
    18240 > hide #!5 models
    18241 
    18242 > hide #!7 models
    18243 
    18244 > hide #!8 models
    18245 
    18246 > hide #!9 models
    18247 
    18248 > hide #!51 models
    18249 
    18250 > hide #!52 models
    18251 
    18252 > hide #!53 models
    18253 
    18254 > hide #!58 models
    18255 
    18256 > hide #!59 models
    18257 
    18258 > hide #!61 models
    18259 
    18260 > lighting full
    18261 
    18262 [Repeated 1 time(s)]
    18263 
    18264 > lighting soft
    18265 
    18266 > lighting simple
    18267 
    18268 > lighting soft
    18269 
    18270 > graphics silhouettes false
    18271 
    18272 > lighting full
    18273 
    18274 > lighting simple
    18275 
    18276 > color #1 #d6d6d6ff models
    18277 
    18278 > color #1 silver models
    18279 
    18280 > lighting full
    18281 
    18282 > lighting soft
    18283 
    18284 > lighting simple
    18285 
    18286 > hide #!1 models
    18287 
    18288 > show #!2 models
    18289 
    18290 > lighting soft
    18291 
    18292 > show #!1 models
    18293 
    18294 > hide #!2 models
    18295 
    18296 > lighting soft
    18297 
    18298 > graphics silhouettes true
    18299 
    18300 > hide #!1 models
    18301 
    18302 > show #!2 models
    18303 
    18304 > ui tool show "Color Zone"
    18305 
    18306 > show #!58 models
    18307 
    18308 > hide #!2 models
    18309 
    18310 > select #58 7 ssu
    18311 
    18312 Expected a keyword 
    18313 
    18314 > select #58 & ssu
    18315 
    18316 76502 atoms, 81635 bonds, 1405 pseudobonds, 6670 residues, 3 models selected 
    18317 
    18318 > select add #58 & lsu
    18319 
    18320 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 3 models
    18321 selected 
    18322 
    18323 > hide #!58 models
    18324 
    18325 > show #!51 models
    18326 
    18327 > hide #!51 models
    18328 
    18329 > show #!52 models
    18330 
    18331 Drag select of 668 residues 
    18332 
    18333 > show #!58 models
    18334 
    18335 > hide #!58 models
    18336 
    18337 > select subtract #52/3
    18338 
    18339 212463 atoms, 221047 bonds, 4355 pseudobonds, 17521 residues, 4 models
    18340 selected 
    18341 
    18342 > show #!2 models
    18343 
    18344 > color zone #2 near sel distance 24
    18345 
    18346 > color zone #2 near sel distance 5
    18347 
    18348 > color zone #2 near sel distance 50
    18349 
    18350 [Repeated 1 time(s)]
    18351 
    18352 > volume splitbyzone #2
    18353 
    18354 Opened MultiPostProcessor_PPout_Decoding.mrc 0 as #10.1, grid size
    18355 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18356 Opened MultiPostProcessor_PPout_Decoding.mrc 1 as #10.2, grid size
    18357 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18358 Opened MultiPostProcessor_PPout_Decoding.mrc 2 as #10.3, grid size
    18359 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18360 Opened MultiPostProcessor_PPout_Decoding.mrc 3 as #10.4, grid size
    18361 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18362 Opened MultiPostProcessor_PPout_Decoding.mrc 4 as #10.5, grid size
    18363 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18364 Opened MultiPostProcessor_PPout_Decoding.mrc 5 as #10.6, grid size
    18365 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18366 
    18367 > hide #!10.1 models
    18368 
    18369 > color #10.2 #d6d6d618 models
    18370 
    18371 > color #10.2 #d6d6d619 models
    18372 
    18373 > color #10.2 #d6d6d632 models
    18374 
    18375 > lighting full
    18376 
    18377 > hide #!52 models
    18378 
    18379 > color #10.3 #a9a9a937 models
    18380 
    18381 > color #10.3 #a9a9a95a models
    18382 
    18383 > color #10.5 #ff3333ff models
    18384 
    18385 > color #10.5 #ff6666ff models
    18386 
    18387 > color #10.5 #cc3333ff models
    18388 
    18389 > color #10.5 #660000ff models
    18390 
    18391 > color #10.5 #cc6666ff models
    18392 
    18393 > color #10.5 #ff6666ff models
    18394 
    18395 > color #10.5 #cc6666ff models
    18396 
    18397 > color #10.5 #ff9999ff models
    18398 
    18399 > color #10.5 #ff7e79ff models
    18400 
    18401 > color #10.5 #ffccccff models
    18402 
    18403 > color #10.5 #ff9999ff models
    18404 
    18405 > color #10.5 #cc6666ff models
    18406 
    18407 > color #10.5 #ff7e79ff models
    18408 
    18409 > color #10.5 #ff6666ff models
    18410 
    18411 > color #10.5 #cc6666ff models
    18412 
    18413 > color #10.6 #993366ff models
    18414 
    18415 > color #10.6 #ff85ffff models
    18416 
    18417 > show #!53 models
    18418 
    18419 > hide #!53 models
    18420 
    18421 > hide #!10 models
    18422 
    18423 > show #!3 models
    18424 
    18425 > show #!61 models
    18426 
    18427 > hide #!3 models
    18428 
    18429 > select #61 & ssu
    18430 
    18431 72156 atoms, 76975 bonds, 1501 pseudobonds, 6327 residues, 4 models selected 
    18432 
    18433 > select add #61 & lsu
    18434 
    18435 197172 atoms, 211322 bonds, 4937 pseudobonds, 16594 residues, 4 models
    18436 selected 
    18437 
    18438 > select add #61/eEF2
    18439 
    18440 203779 atoms, 218051 bonds, 4944 pseudobonds, 17443 residues, 4 models
    18441 selected 
    18442 
    18443 > show #!53 models
    18444 
    18445 > hide #!61 models
    18446 
    18447 > select add #53/eI
    18448 
    18449 204922 atoms, 219209 bonds, 4944 pseudobonds, 17597 residues, 5 models
    18450 selected 
    18451 
    18452 > show #!3 models
    18453 
    18454 > hide #!3 models
    18455 
    18456 > show #!61 models
    18457 
    18458 > show #!3 models
    18459 
    18460 > show #!2 models
    18461 
    18462 > hide #!2 models
    18463 
    18464 > select add #53/BT
    18465 
    18466 205972 atoms, 220258 bonds, 4944 pseudobonds, 17807 residues, 5 models
    18467 selected 
    18468 
    18469 > color zone #3 near sel distance 50
    18470 
    18471 > hide #!53 models
    18472 
    18473 > hide #!61 models
    18474 
    18475 > volume splitbyzone #3
    18476 
    18477 Opened MultiPostProcessor_PPout_Hibernating.mrc 0 as #11.1, grid size
    18478 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18479 Opened MultiPostProcessor_PPout_Hibernating.mrc 1 as #11.2, grid size
    18480 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18481 Opened MultiPostProcessor_PPout_Hibernating.mrc 2 as #11.3, grid size
    18482 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18483 Opened MultiPostProcessor_PPout_Hibernating.mrc 3 as #11.4, grid size
    18484 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18485 Opened MultiPostProcessor_PPout_Hibernating.mrc 4 as #11.5, grid size
    18486 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18487 Opened MultiPostProcessor_PPout_Hibernating.mrc 5 as #11.6, grid size
    18488 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18489 Opened MultiPostProcessor_PPout_Hibernating.mrc 6 as #11.7, grid size
    18490 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18491 
    18492 > hide #!11.1 models
    18493 
    18494 > hide #!11.7 models
    18495 
    18496 > show #!11.7 models
    18497 
    18498 > hide #!11.7 models
    18499 
    18500 > show #!11.7 models
    18501 
    18502 > hide #!11.7 models
    18503 
    18504 > show #!11.7 models
    18505 
    18506 > hide #!11.7 models
    18507 
    18508 > show #!11.7 models
    18509 
    18510 > hide #!11.7 models
    18511 
    18512 > show #!11.7 models
    18513 
    18514 > show #!2 models
    18515 
    18516 > hide #!11 models
    18517 
    18518 > hide #!2 models
    18519 
    18520 > show #!10 models
    18521 
    18522 > close #10-11
    18523 
    18524 > show #!52 models
    18525 
    18526 > show #!2 models
    18527 
    18528 > hide #!2 models
    18529 
    18530 > select #52/ii:22
    18531 
    18532 22 atoms, 24 bonds, 1 residue, 1 model selected 
    18533 
    18534 > select up
    18535 
    18536 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    18537 
    18538 > color sel #945200ff
    18539 
    18540 > color sel #941100ff
    18541 
    18542 > undo
    18543 
    18544 [Repeated 9 time(s)]
    18545 
    18546 > select add #53
    18547 
    18548 408741 atoms, 438233 bonds, 10174 pseudobonds, 34341 residues, 8 models
    18549 selected 
    18550 
    18551 > select subtract #53
    18552 
    18553 203779 atoms, 218051 bonds, 4944 pseudobonds, 17443 residues, 4 models
    18554 selected 
    18555 
    18556 > select add #61
    18557 
    18558 207066 atoms, 221714 bonds, 5069 pseudobonds, 17603 residues, 4 models
    18559 selected 
    18560 
    18561 > select subtract #61
    18562 
    18563 Nothing selected 
    18564 
    18565 > hide #!2 models
    18566 
    18567 > show #!51 models
    18568 
    18569 > show #!52 models
    18570 
    18571 > show #!53 models
    18572 
    18573 > show #!59 models
    18574 
    18575 > show #!61 models
    18576 
    18577 > show #!58 models
    18578 
    18579 > hide #!58 models
    18580 
    18581 > hide #!59 models
    18582 
    18583 > hide #!61 models
    18584 
    18585 > select #52/ii:56
    18586 
    18587 20 atoms, 21 bonds, 1 residue, 1 model selected 
    18588 
    18589 > select up
    18590 
    18591 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    18592 
    18593 > select up
    18594 
    18595 220934 atoms, 236952 bonds, 18186 residues, 1 model selected 
    18596 
    18597 > select down
    18598 
    18599 1616 atoms, 1806 bonds, 76 residues, 1 model selected 
    18600 
    18601 > color sel #000000ff
    18602 
    18603 > color sel #941100ff
    18604 
    18605 > select #52/jj:124
    18606 
    18607 9 atoms, 8 bonds, 1 residue, 1 model selected 
    18608 
    18609 > select up
    18610 
    18611 50 atoms, 50 bonds, 7 residues, 1 model selected 
    18612 
    18613 > select up
    18614 
    18615 3383 atoms, 3453 bonds, 441 residues, 1 model selected 
    18616 
    18617 > select up
    18618 
    18619 3491 atoms, 3565 bonds, 444 residues, 1 model selected 
    18620 
    18621 > show sel atoms
    18622 
    18623 > hide sel atoms
    18624 
    18625 > color sel #942193ff
    18626 
    18627 > color sel #ff40ffff
    18628 
    18629 > color sel #ff85ffff
    18630 
    18631 > color sel #d783ffff
    18632 
    18633 > color sel #7a81ffff
    18634 
    18635 > color sel #d783ffff
    18636 
    18637 > select #53/eI:75
    18638 
    18639 7 atoms, 7 bonds, 1 residue, 1 model selected 
    18640 
    18641 > select up
    18642 
    18643 64 atoms, 64 bonds, 8 residues, 1 model selected 
    18644 
    18645 > select up
    18646 
    18647 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    18648 
    18649 > color sel #9437ffff
    18650 
    18651 > color sel #7a81ffff
    18652 
    18653 > color sel #ff85ffff
    18654 
    18655 > color sel #ff8ad8ff
    18656 
    18657 > color sel #ff2f92ff
    18658 
    18659 > color sel #941751ff
    18660 
    18661 > color sel #011993ff
    18662 
    18663 > color sel #76d6ffff
    18664 
    18665 > hide #!51 models
    18666 
    18667 > show #!51 models
    18668 
    18669 > hide #!51 models
    18670 
    18671 > hide #!52 models
    18672 
    18673 > hide #!53 models
    18674 
    18675 > show #!58 models
    18676 
    18677 > hide #!58 models
    18678 
    18679 > show #!59 models
    18680 
    18681 > hide #!59 models
    18682 
    18683 > show #!61 models
    18684 
    18685 > show #!58 models
    18686 
    18687 > show #!59 models
    18688 
    18689 > hide #!58 models
    18690 
    18691 > hide #!59 models
    18692 
    18693 > hide #!61 models
    18694 
    18695 > show #!2 models
    18696 
    18697 > hide #!2 models
    18698 
    18699 > show #!58 models
    18700 
    18701 > select #58 & ssu
    18702 
    18703 76502 atoms, 81635 bonds, 1405 pseudobonds, 6670 residues, 3 models selected 
    18704 
    18705 > select add #58 & lsu
    18706 
    18707 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 3 models
    18708 selected 
    18709 
    18710 > hide #!58 models
    18711 
    18712 > show #!52 models
    18713 
    18714 > hide #!52 models
    18715 
    18716 > show #!58 models
    18717 
    18718 > show #!53 models
    18719 
    18720 > hide #!58 models
    18721 
    18722 > show #!59 models
    18723 
    18724 > hide #!59 models
    18725 
    18726 > select #53/BT:14
    18727 
    18728 5 atoms, 4 bonds, 1 residue, 1 model selected 
    18729 Drag select of 276 residues 
    18730 
    18731 > select subtract $53/eI
    18732 
    18733 Expected an objects specifier or a keyword 
    18734 
    18735 > select subtract #53/eI
    18736 
    18737 1050 atoms, 210 residues, 1 model selected 
    18738 
    18739 > color sel #d6d6d6ff
    18740 
    18741 > color sel #a9a9a9ff
    18742 
    18743 > color sel #d6d6d6ff
    18744 
    18745 > select clear
    18746 
    18747 > hide #!53 models
    18748 
    18749 > show #!58 models
    18750 
    18751 > show #!52 models
    18752 
    18753 > select #58 & ssu
    18754 
    18755 76502 atoms, 81635 bonds, 1405 pseudobonds, 6670 residues, 3 models selected 
    18756 
    18757 > select add #58 & lsu
    18758 
    18759 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 3 models
    18760 selected 
    18761 
    18762 > hide #!58 models
    18763 
    18764 Drag select of 668 residues 
    18765 
    18766 > select subtract #52/3
    18767 
    18768 212463 atoms, 221047 bonds, 4355 pseudobonds, 17521 residues, 4 models
    18769 selected 
    18770 
    18771 > show #!53 models
    18772 
    18773 > select #53/BT:10
    18774 
    18775 5 atoms, 4 bonds, 1 residue, 1 model selected 
    18776 
    18777 > select up
    18778 
    18779 75 atoms, 74 bonds, 15 residues, 1 model selected 
    18780 
    18781 > select up
    18782 
    18783 1050 atoms, 1049 bonds, 210 residues, 1 model selected 
    18784 
    18785 > show sel atoms
    18786 
    18787 > hide sel atoms
    18788 
    18789 > show sel cartoons
    18790 
    18791 > undo
    18792 
    18793 [Repeated 5 time(s)]
    18794 
    18795 > show #!58 models
    18796 
    18797 > hide #!58 models
    18798 
    18799 > select add #53BT
    18800 
    18801 Expected an objects specifier or a keyword 
    18802 
    18803 > select add #53/BT
    18804 
    18805 213513 atoms, 222096 bonds, 4355 pseudobonds, 17731 residues, 5 models
    18806 selected 
    18807 
    18808 > show #!2 models
    18809 
    18810 > color zone #2 near sel distance 50
    18811 
    18812 > hide #!52 models
    18813 
    18814 > hide #!53 models
    18815 
    18816 > volume splitbyzone #2
    18817 
    18818 Opened MultiPostProcessor_PPout_Decoding.mrc 0 as #10.1, grid size
    18819 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18820 Opened MultiPostProcessor_PPout_Decoding.mrc 1 as #10.2, grid size
    18821 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18822 Opened MultiPostProcessor_PPout_Decoding.mrc 2 as #10.3, grid size
    18823 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18824 Opened MultiPostProcessor_PPout_Decoding.mrc 3 as #10.4, grid size
    18825 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18826 Opened MultiPostProcessor_PPout_Decoding.mrc 4 as #10.5, grid size
    18827 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18828 Opened MultiPostProcessor_PPout_Decoding.mrc 5 as #10.6, grid size
    18829 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18830 
    18831 > hide #!10.1 models
    18832 
    18833 > hide #!10.6 models
    18834 
    18835 > show #!10.6 models
    18836 
    18837 > color #10.2 #d6d6d632 models
    18838 
    18839 > lighting full
    18840 
    18841 > color #10.2 #d6d6d633 models
    18842 
    18843 > color #10.3 #a9a9a959 models
    18844 
    18845 > hide #!10 models
    18846 
    18847 > show #!3 models
    18848 
    18849 > show #!61 models
    18850 
    18851 > select #61 & ssu
    18852 
    18853 72156 atoms, 76975 bonds, 1501 pseudobonds, 6327 residues, 4 models selected 
    18854 
    18855 > select add #61 & lsu
    18856 
    18857 197172 atoms, 211322 bonds, 4937 pseudobonds, 16594 residues, 4 models
    18858 selected 
    18859 
    18860 > hide #!3 models
    18861 
    18862 > select add #61/eEF2
    18863 
    18864 203779 atoms, 218051 bonds, 4944 pseudobonds, 17443 residues, 4 models
    18865 selected 
    18866 
    18867 > show #!53 models
    18868 
    18869 > hide #!61 models
    18870 
    18871 Drag select of 364 residues 
    18872 
    18873 > hide #!53 models
    18874 
    18875 > show #!3 models
    18876 
    18877 > color zone #3 near sel distance 50
    18878 
    18879 > volume splitbyzone #3
    18880 
    18881 Opened MultiPostProcessor_PPout_Hibernating.mrc 0 as #11.1, grid size
    18882 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18883 Opened MultiPostProcessor_PPout_Hibernating.mrc 1 as #11.2, grid size
    18884 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18885 Opened MultiPostProcessor_PPout_Hibernating.mrc 2 as #11.3, grid size
    18886 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18887 Opened MultiPostProcessor_PPout_Hibernating.mrc 3 as #11.4, grid size
    18888 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18889 Opened MultiPostProcessor_PPout_Hibernating.mrc 4 as #11.5, grid size
    18890 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    18891 
    18892 > hide #!11.1 models
    18893 
    18894 > color #11.2 #d6d6d630 models
    18895 
    18896 > color #11.2 #d6d6d634 models
    18897 
    18898 > color #11.2 #d6d6d633 models
    18899 
    18900 > color #11.3 #a9a9a956 models
    18901 
    18902 > color #11.3 #a9a9a959 models
    18903 
    18904 > hide #!11 models
    18905 
    18906 > show #!4 models
    18907 
    18908 > show #!61 models
    18909 
    18910 > hide #!4 models
    18911 
    18912 > show #!4 models
    18913 
    18914 > hide #!61 models
    18915 
    18916 > select clear
    18917 
    18918 > show #!58 models
    18919 
    18920 > hide #!58 models
    18921 
    18922 > show #!59 models
    18923 
    18924 > show #!61 models
    18925 
    18926 > hide #!59 models
    18927 
    18928 > hide #!4 models
    18929 
    18930 > show #!4 models
    18931 
    18932 > hide #!4 models
    18933 
    18934 > show #!4 models
    18935 
    18936 > hide #!4 models
    18937 
    18938 > show #!4 models
    18939 
    18940 > select #61 & ssu
    18941 
    18942 72156 atoms, 76975 bonds, 1501 pseudobonds, 6327 residues, 4 models selected 
    18943 
    18944 > select add #61/eEF2
    18945 
    18946 78763 atoms, 83704 bonds, 1508 pseudobonds, 7176 residues, 4 models selected 
    18947 
    18948 > select add #61 & lsu
    18949 
    18950 203779 atoms, 218051 bonds, 4944 pseudobonds, 17443 residues, 4 models
    18951 selected 
    18952 
    18953 > show #!52 models
    18954 
    18955 > hide #!61 models
    18956 
    18957 > hide #!4 models
    18958 
    18959 Drag select of 151 residues 
    18960 
    18961 > show #!61 models
    18962 
    18963 > hide #!61 models
    18964 
    18965 > show #!61 models
    18966 
    18967 > show #!4 models
    18968 
    18969 > hide #!4 models
    18970 
    18971 > show #!4 models
    18972 
    18973 > hide #!4 models
    18974 
    18975 > show #!53 models
    18976 
    18977 > hide #!61 models
    18978 
    18979 > hide #!52 models
    18980 
    18981 > hide #!53 models
    18982 
    18983 > show #!52 models
    18984 
    18985 > show #!4 models
    18986 
    18987 > color zone #4 near sel distance 50
    18988 
    18989 > hide #!52 models
    18990 
    18991 > show #!53 models
    18992 
    18993 > hide #!4 models
    18994 
    18995 > show #!52 models
    18996 
    18997 Drag select of 43 residues 
    18998 
    18999 > select subtract #53/eI:4
    19000 
    19001 207198 atoms, 218051 bonds, 4944 pseudobonds, 17636 residues, 6 models
    19002 selected 
    19003 
    19004 > show #!4 models
    19005 
    19006 > color zone #4 near sel distance 50
    19007 
    19008 > hide #!4 models
    19009 
    19010 Drag select of 43 residues 
    19011 
    19012 > select add #53/BT:20
    19013 
    19014 207408 atoms, 218055 bonds, 4944 pseudobonds, 17678 residues, 6 models
    19015 selected 
    19016 
    19017 > show #!4 models
    19018 
    19019 > color zone #4 near sel distance 50
    19020 
    19021 > volume splitbyzone #4
    19022 
    19023 Opened MultiPostProcessor_PPout_Int_Post.mrc 0 as #12.1, grid size
    19024 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19025 Opened MultiPostProcessor_PPout_Int_Post.mrc 1 as #12.2, grid size
    19026 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19027 Opened MultiPostProcessor_PPout_Int_Post.mrc 2 as #12.3, grid size
    19028 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19029 Opened MultiPostProcessor_PPout_Int_Post.mrc 3 as #12.4, grid size
    19030 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19031 Opened MultiPostProcessor_PPout_Int_Post.mrc 4 as #12.5, grid size
    19032 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19033 Opened MultiPostProcessor_PPout_Int_Post.mrc 5 as #12.6, grid size
    19034 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19035 Opened MultiPostProcessor_PPout_Int_Post.mrc 6 as #12.7, grid size
    19036 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19037 
    19038 > hide #!12.1 models
    19039 
    19040 > color #12.2 #d6d6d633 models
    19041 
    19042 > color #12.3 #a9a9a959 models
    19043 
    19044 > hide #!52 models
    19045 
    19046 > hide #!53 models
    19047 
    19048 > hide #!12 models
    19049 
    19050 > show #!5 models
    19051 
    19052 > show #!4 models
    19053 
    19054 > hide #!4 models
    19055 
    19056 > hide #!5 models
    19057 
    19058 > show #!59 models
    19059 
    19060 > show #!58 models
    19061 
    19062 > hide #!59 models
    19063 
    19064 > show #!5 models
    19065 
    19066 > select #58 & lsu
    19067 
    19068 129346 atoms, 139412 bonds, 2950 pseudobonds, 10258 residues, 3 models
    19069 selected 
    19070 
    19071 > select add #58 & ssu
    19072 
    19073 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 3 models
    19074 selected 
    19075 
    19076 > hide #!58 models
    19077 
    19078 > show #!53 models
    19079 
    19080 > select add #53/BT
    19081 
    19082 206898 atoms, 222096 bonds, 4355 pseudobonds, 17138 residues, 4 models
    19083 selected 
    19084 
    19085 > hide #!53 models
    19086 
    19087 > show #!52 models
    19088 
    19089 > select add #52/2
    19090 
    19091 208514 atoms, 223902 bonds, 4422 pseudobonds, 17214 residues, 6 models
    19092 selected 
    19093 
    19094 > hide #!52 models
    19095 
    19096 > show #!4 models
    19097 
    19098 > hide #!4 models
    19099 
    19100 > color zone #5 near sel distance 50
    19101 
    19102 > hide #!12.7 models
    19103 
    19104 > show #!12.7 models
    19105 
    19106 > hide #!12.7 models
    19107 
    19108 > show #!12.7 models
    19109 
    19110 > hide #!12 models
    19111 
    19112 > volume splitbyzone #5
    19113 
    19114 Opened MultiPostProcessor_PPout_Post.mrc 0 as #13.1, grid size 128,128,128,
    19115 pixel 4, shown at level 0.6, step 1, values float32 
    19116 Opened MultiPostProcessor_PPout_Post.mrc 1 as #13.2, grid size 128,128,128,
    19117 pixel 4, shown at level 0.6, step 1, values float32 
    19118 Opened MultiPostProcessor_PPout_Post.mrc 2 as #13.3, grid size 128,128,128,
    19119 pixel 4, shown at level 0.6, step 1, values float32 
    19120 Opened MultiPostProcessor_PPout_Post.mrc 3 as #13.4, grid size 128,128,128,
    19121 pixel 4, shown at level 0.6, step 1, values float32 
    19122 
    19123 > hide #!13.1 models
    19124 
    19125 > color #13.2 #d6d6d632 models
    19126 
    19127 > color #13.2 #d6d6d633 models
    19128 
    19129 > color #13.3 #a9a9a94a models
    19130 
    19131 > color #13.3 #a9a9a95a models
    19132 
    19133 > color #13.3 #a9a9a959 models
    19134 
    19135 > hide #!13 models
    19136 
    19137 > show #!6 models
    19138 
    19139 > show #!59 models
    19140 
    19141 > select #59 & lsu
    19142 
    19143 129037 atoms, 139067 bonds, 2949 pseudobonds, 10245 residues, 3 models
    19144 selected 
    19145 
    19146 > select add #59 & ssu
    19147 
    19148 206107 atoms, 221271 bonds, 4351 pseudobonds, 16987 residues, 3 models
    19149 selected 
    19150 
    19151 > hide #!59 models
    19152 
    19153 > hide #!6 models
    19154 
    19155 > show #!51 models
    19156 
    19157 > show #!6 models
    19158 
    19159 > hide #!6 models
    19160 
    19161 > show #!59 models
    19162 
    19163 > hide #!59 models
    19164 
    19165 Drag select of 149 residues 
    19166 
    19167 > show #!59 models
    19168 
    19169 > show #!6 models
    19170 
    19171 > color zone #6 near sel distance 50
    19172 
    19173 > volume splitbyzone #6
    19174 
    19175 Opened MultiPostProcessor_PPout_Rotated.mrc 0 as #14.1, grid size 128,128,128,
    19176 pixel 4, shown at level 0.6, step 1, values float32 
    19177 Opened MultiPostProcessor_PPout_Rotated.mrc 1 as #14.2, grid size 128,128,128,
    19178 pixel 4, shown at level 0.6, step 1, values float32 
    19179 Opened MultiPostProcessor_PPout_Rotated.mrc 2 as #14.3, grid size 128,128,128,
    19180 pixel 4, shown at level 0.6, step 1, values float32 
    19181 Opened MultiPostProcessor_PPout_Rotated.mrc 3 as #14.4, grid size 128,128,128,
    19182 pixel 4, shown at level 0.6, step 1, values float32 
    19183 Opened MultiPostProcessor_PPout_Rotated.mrc 4 as #14.5, grid size 128,128,128,
    19184 pixel 4, shown at level 0.6, step 1, values float32 
    19185 
    19186 > hide #!14.1 models
    19187 
    19188 > color #14.2 #d6d6d639 models
    19189 
    19190 > color #14.2 #d6d6d634 models
    19191 
    19192 > color #14.2 #d6d6d633 models
    19193 
    19194 > color #14.3 #a9a9a95a models
    19195 
    19196 > hide #!51 models
    19197 
    19198 > color #14.3 #a9a9a959 models
    19199 
    19200 > hide #!59 models
    19201 
    19202 > show #!51 models
    19203 
    19204 > hide #!14 models
    19205 
    19206 > show #!7 models
    19207 
    19208 > show #!59 models
    19209 
    19210 > hide #!59 models
    19211 
    19212 > show #!59 models
    19213 
    19214 > show #!61 models
    19215 
    19216 > select add #61/eEF2
    19217 
    19218 215897 atoms, 228000 bonds, 4358 pseudobonds, 17985 residues, 6 models
    19219 selected 
    19220 
    19221 > color zone #7 near sel distance 50
    19222 
    19223 > hide #!59 models
    19224 
    19225 > hide #!51 models
    19226 
    19227 > hide #!61 models
    19228 
    19229 > volume splitbyzone #7
    19230 
    19231 Opened MultiPostProcessor_PPout_Translocating.mrc 0 as #15.1, grid size
    19232 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19233 Opened MultiPostProcessor_PPout_Translocating.mrc 1 as #15.2, grid size
    19234 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19235 Opened MultiPostProcessor_PPout_Translocating.mrc 2 as #15.3, grid size
    19236 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19237 Opened MultiPostProcessor_PPout_Translocating.mrc 3 as #15.4, grid size
    19238 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19239 Opened MultiPostProcessor_PPout_Translocating.mrc 4 as #15.5, grid size
    19240 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19241 Opened MultiPostProcessor_PPout_Translocating.mrc 5 as #15.6, grid size
    19242 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19243 Opened MultiPostProcessor_PPout_Translocating.mrc 6 as #15.7, grid size
    19244 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19245 
    19246 > close #15
    19247 
    19248 > show #!7 models
    19249 
    19250 > show #!61 models
    19251 
    19252 > hide #!7 models
    19253 
    19254 > show #!51 models
    19255 
    19256 > hide #!51 models
    19257 
    19258 > show #!59 models
    19259 
    19260 > hide #!59 models
    19261 
    19262 > hide #!61 models
    19263 
    19264 > show #!61 models
    19265 
    19266 > show #!51 models
    19267 
    19268 > name frozen temprot sel
    19269 
    19270 Drag select of 580 residues, 1 pseudobonds 
    19271 
    19272 > select sel & #61/eEF2
    19273 
    19274 526 atoms, 532 bonds, 64 residues, 1 model selected 
    19275 
    19276 > select sel | #61/eEF2
    19277 
    19278 13555 atoms, 14192 bonds, 112 pseudobonds, 1365 residues, 6 models selected 
    19279 
    19280 > select sel & #61/eEF2
    19281 
    19282 6607 atoms, 6729 bonds, 7 pseudobonds, 849 residues, 2 models selected 
    19283 Drag select of 531 residues, 1 pseudobonds 
    19284 
    19285 > select sel & #61/eEF2
    19286 
    19287 681 atoms, 691 bonds, 84 residues, 1 model selected 
    19288 
    19289 > select #61/eEF2 | sel
    19290 
    19291 6607 atoms, 6729 bonds, 7 pseudobonds, 849 residues, 2 models selected 
    19292 
    19293 > undo
    19294 
    19295 > name frozen ef2excess sel
    19296 
    19297 > select temprot
    19298 
    19299 215897 atoms, 231560 bonds, 4468 pseudobonds, 17985 residues, 7 models
    19300 selected 
    19301 
    19302 > select subtract ef2excess
    19303 
    19304 215216 atoms, 230860 bonds, 4468 pseudobonds, 17901 residues, 7 models
    19305 selected 
    19306 
    19307 > show #!7 models
    19308 
    19309 > color zone #7 near sel distance 50
    19310 
    19311 > volume splitbyzone #7
    19312 
    19313 Opened MultiPostProcessor_PPout_Translocating.mrc 0 as #15.1, grid size
    19314 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19315 Opened MultiPostProcessor_PPout_Translocating.mrc 1 as #15.2, grid size
    19316 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19317 Opened MultiPostProcessor_PPout_Translocating.mrc 2 as #15.3, grid size
    19318 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19319 Opened MultiPostProcessor_PPout_Translocating.mrc 3 as #15.4, grid size
    19320 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19321 Opened MultiPostProcessor_PPout_Translocating.mrc 4 as #15.5, grid size
    19322 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19323 Opened MultiPostProcessor_PPout_Translocating.mrc 5 as #15.6, grid size
    19324 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19325 Opened MultiPostProcessor_PPout_Translocating.mrc 6 as #15.7, grid size
    19326 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19327 
    19328 > hide #!15.1 models
    19329 
    19330 > hide #!51 models
    19331 
    19332 > hide #!61 models
    19333 
    19334 > color #15.2 #d6d6d633 models
    19335 
    19336 > color #15.3 #a9a9a959 models
    19337 
    19338 > hide #!15.5 models
    19339 
    19340 > show #!15.5 models
    19341 
    19342 > hide #!15.5 models
    19343 
    19344 > show #!15.5 models
    19345 
    19346 > show #!51 models
    19347 
    19348 > hide #!51 models
    19349 
    19350 > show #!59 models
    19351 
    19352 > hide #!59 models
    19353 
    19354 > show #!61 models
    19355 
    19356 > hide #!61 models
    19357 
    19358 > hide #!15.5 models
    19359 
    19360 > hide #!15 models
    19361 
    19362 > show #!8 models
    19363 
    19364 > show #!58 models
    19365 
    19366 > select #58 & lsu
    19367 
    19368 129346 atoms, 139412 bonds, 2950 pseudobonds, 10258 residues, 3 models
    19369 selected 
    19370 
    19371 > select add #58 & ssu
    19372 
    19373 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 3 models
    19374 selected 
    19375 
    19376 > hide #!58 models
    19377 
    19378 > hide #!8 models
    19379 
    19380 > show #!53 models
    19381 
    19382 > show #!52 models
    19383 
    19384 > hide #!52 models
    19385 
    19386 > show #!51 models
    19387 
    19388 > hide #!51 models
    19389 
    19390 > show #!52 models
    19391 
    19392 > show #!8 models
    19393 
    19394 > hide #!8 models
    19395 
    19396 > hide #!53 models
    19397 
    19398 > show #!53 models
    19399 
    19400 > hide #!52 models
    19401 
    19402 Drag select of 364 residues 
    19403 
    19404 > show #!52 models
    19405 
    19406 > hide #!53 models
    19407 
    19408 > select add #52/2
    19409 
    19410 209657 atoms, 222853 bonds, 4422 pseudobonds, 17368 residues, 6 models
    19411 selected 
    19412 
    19413 > hide #!52 models
    19414 
    19415 > show #!59 models
    19416 
    19417 > hide #!59 models
    19418 
    19419 > show #!51 models
    19420 
    19421 > hide #!51 models
    19422 
    19423 > show #!61 models
    19424 
    19425 > show #!53 models
    19426 
    19427 > hide #!53 models
    19428 
    19429 > name frozen unrno2 sel
    19430 
    19431 Drag select of 2302 residues, 9 pseudobonds 
    19432 
    19433 > show #!8 models
    19434 
    19435 > hide #!61 models
    19436 
    19437 > show #!52 models
    19438 
    19439 > select ef2excess
    19440 
    19441 681 atoms, 691 bonds, 84 residues, 1 model selected 
    19442 
    19443 > select unrno2
    19444 
    19445 209657 atoms, 225060 bonds, 4422 pseudobonds, 17368 residues, 6 models
    19446 selected 
    19447 
    19448 > hide #!8 models
    19449 
    19450 > select add #52/jj
    19451 
    19452 213148 atoms, 228625 bonds, 4426 pseudobonds, 17812 residues, 7 models
    19453 selected 
    19454 
    19455 > show #!8 models
    19456 
    19457 > color zone #8 near sel distance 50
    19458 
    19459 > hide #!52 models
    19460 
    19461 > show #!53 models
    19462 
    19463 > hide #!8 models
    19464 
    19465 Drag select of 76 residues 
    19466 
    19467 > show #!7 models
    19468 
    19469 > color zone #8 near sel distance 50
    19470 
    19471 > hide #!7 models
    19472 
    19473 > show #!8 models
    19474 
    19475 > volume splitbyzone #8
    19476 
    19477 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 0 as #16.1, grid size
    19478 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19479 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 1 as #16.2, grid size
    19480 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19481 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 2 as #16.3, grid size
    19482 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19483 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 3 as #16.4, grid size
    19484 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19485 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 4 as #16.5, grid size
    19486 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19487 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 5 as #16.6, grid size
    19488 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19489 Opened MultiPostProcessor_PPout_UnPre_cEF2.mrc 6 as #16.7, grid size
    19490 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19491 
    19492 > hide #!16.1 models
    19493 
    19494 > color #16.2 #d6d6d633 models
    19495 
    19496 > color #16.3 #a9a9a958 models
    19497 
    19498 > hide #!53 models
    19499 
    19500 > color #16.3 #a9a9a957 models
    19501 
    19502 > color #16.5 #4f8f00ff models
    19503 
    19504 > show #!15 models
    19505 
    19506 > color #16.5 #8efa00ff models
    19507 
    19508 > color #16.5 #009193ff models
    19509 
    19510 > color #16.5 #008f00ff models
    19511 
    19512 > color #16.5 #4f8f00ff models
    19513 
    19514 [Repeated 1 time(s)]
    19515 
    19516 > color #15.4 #008f00ff models
    19517 
    19518 > color #15.4 #4f8f00ff models
    19519 
    19520 > undo
    19521 
    19522 [Repeated 6 time(s)]
    19523 
    19524 > color #15.4 #008f00ff models
    19525 
    19526 > color #15.4 #4f8f00ff models
    19527 
    19528 > hide #!15 models
    19529 
    19530 > color #16.5 #0096ffff models
    19531 
    19532 > color #16.5 #4f8f00ff models
    19533 
    19534 > show #!10 models
    19535 
    19536 > hide #!10 models
    19537 
    19538 > show #!15 models
    19539 
    19540 > hide #!15 models
    19541 
    19542 > show #!12 models
    19543 
    19544 > hide #!12 models
    19545 
    19546 > color #16.7 #009193ff models
    19547 
    19548 > show #!12 models
    19549 
    19550 > hide #!12 models
    19551 
    19552 > show #!15 models
    19553 
    19554 > hide #!15 models
    19555 
    19556 > show #!15 models
    19557 
    19558 > hide #!15 models
    19559 
    19560 > show #!15 models
    19561 
    19562 > hide #!15 models
    19563 
    19564 > show #!15 models
    19565 
    19566 > hide #!15 models
    19567 
    19568 > hide #!16 models
    19569 
    19570 > show #!52 models
    19571 
    19572 > hide #!52 models
    19573 
    19574 > select clear
    19575 
    19576 > show #!53 models
    19577 
    19578 > select #53/eI:19
    19579 
    19580 12 atoms, 12 bonds, 1 residue, 1 model selected 
    19581 
    19582 > select up
    19583 
    19584 19 atoms, 20 bonds, 2 residues, 1 model selected 
    19585 
    19586 > select up
    19587 
    19588 1143 atoms, 1158 bonds, 154 residues, 1 model selected 
    19589 
    19590 > color #16.7 #009193ff models
    19591 
    19592 > color #16.7 #011993ff models
    19593 
    19594 > color #16.7 #009193ff models
    19595 
    19596 > show #!15 models
    19597 
    19598 > show #!16 models
    19599 
    19600 > color #16.7 #ff40ffff models
    19601 
    19602 > color #16.7 #009193ff models
    19603 
    19604 > hide #!15 models
    19605 
    19606 > hide #!16 models
    19607 
    19608 > ui tool show "Color Actions"
    19609 
    19610 > color sel #009051ff
    19611 
    19612 > color sel #009193ff
    19613 
    19614 > show #!59 models
    19615 
    19616 > show #!61 models
    19617 
    19618 > hide #!59 models
    19619 
    19620 > select #61/eEF2:351
    19621 
    19622 12 atoms, 12 bonds, 1 residue, 1 model selected 
    19623 
    19624 > select up
    19625 
    19626 68 atoms, 69 bonds, 9 residues, 1 model selected 
    19627 
    19628 > select up
    19629 
    19630 6569 atoms, 6695 bonds, 842 residues, 1 model selected 
    19631 
    19632 > color sel #00fdffff
    19633 
    19634 > color sel #4f8f00ff
    19635 
    19636 > select clear
    19637 
    19638 > hide #!53 models
    19639 
    19640 > hide #!61 models
    19641 
    19642 > show #!9 models
    19643 
    19644 > select temprot
    19645 
    19646 215897 atoms, 231560 bonds, 4468 pseudobonds, 17985 residues, 7 models
    19647 selected 
    19648 
    19649 > show #!61 models
    19650 
    19651 > show #!59 models
    19652 
    19653 > select subtract #61/eEF2
    19654 
    19655 209290 atoms, 224831 bonds, 4461 pseudobonds, 17136 residues, 5 models
    19656 selected 
    19657 
    19658 > select unrno2
    19659 
    19660 209657 atoms, 225060 bonds, 4422 pseudobonds, 17368 residues, 6 models
    19661 selected 
    19662 
    19663 > show #!53 models
    19664 
    19665 > hide #!59 models
    19666 
    19667 > hide #!61 models
    19668 
    19669 > hide #!9 models
    19670 
    19671 Drag select of 76 residues 
    19672 
    19673 > color zone #9 near sel distance 50
    19674 
    19675 > show #!9 models
    19676 
    19677 > hide #!53 models
    19678 
    19679 > volume splitbyzone #9
    19680 
    19681 Opened MultiPostProcessor_PPout_UnPre_none.mrc 0 as #17.1, grid size
    19682 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19683 Opened MultiPostProcessor_PPout_UnPre_none.mrc 1 as #17.2, grid size
    19684 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19685 Opened MultiPostProcessor_PPout_UnPre_none.mrc 2 as #17.3, grid size
    19686 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19687 Opened MultiPostProcessor_PPout_UnPre_none.mrc 3 as #17.4, grid size
    19688 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19689 Opened MultiPostProcessor_PPout_UnPre_none.mrc 4 as #17.5, grid size
    19690 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19691 Opened MultiPostProcessor_PPout_UnPre_none.mrc 5 as #17.6, grid size
    19692 128,128,128, pixel 4, shown at level 0.6, step 1, values float32 
    19693 
    19694 > hide #!17.1 models
    19695 
    19696 > color #17.2 #d6d6d634 models
    19697 
    19698 > color #17.2 #d6d6d633 models
    19699 
    19700 > color #17.3 #a9a9a95a models
    19701 
    19702 > color #17.3 #a9a9a959 models
    19703 
    19704 > hide #!17 models
    19705 
    19706 > show #!16 models
    19707 
    19708 > hide #!16 models
    19709 
    19710 > show #!15 models
    19711 
    19712 > hide #!15 models
    19713 
    19714 > show #!14 models
    19715 
    19716 > hide #!14 models
    19717 
    19718 > show #!15 models
    19719 
    19720 > hide #!15 models
    19721 
    19722 > show #!14 models
    19723 
    19724 > hide #!14 models
    19725 
    19726 > show #!13 models
    19727 
    19728 > hide #!13 models
    19729 
    19730 > show #!11 models
    19731 
    19732 > color #11.5 #009193ff models
    19733 
    19734 > hide #!11 models
    19735 
    19736 > show #!10 models
    19737 
    19738 > show #!11 models
    19739 
    19740 > show #!12 models
    19741 
    19742 > show #!13 models
    19743 
    19744 > show #!14 models
    19745 
    19746 > show #!15 models
    19747 
    19748 > show #!16 models
    19749 
    19750 > show #!17 models
    19751 
    19752 > show #!1 models
    19753 
    19754 > hide #!1 models
    19755 
    19756 > save
    19757 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/Ribofigs/PlaceholderDensitiesColoured.cxs
    19758 > includeMaps true
    19759 
    19760 ——— End of log from Wed Feb 4 17:42:03 2026 ———
    19761 
    19762 > view name session-start
    19763 
    19764 opened ChimeraX session 
    19765 
    19766 > graphics silhouettes false
    19767 
    19768 > graphics silhouettes true
    19769 
    19770 > graphics silhouettes true depthJump 0.01
    19771 
    19772 > graphics silhouettes true depthJump 0.005
    19773 
    19774 > hide #!11 models
    19775 
    19776 > hide #!12 models
    19777 
    19778 > hide #!14 models
    19779 
    19780 > hide #!13 models
    19781 
    19782 > hide #!16 models
    19783 
    19784 > hide #!17 models
    19785 
    19786 > hide #!15 models
    19787 
    19788 > graphics silhouettes true depthJump 0.01
    19789 
    19790 > show #!11 models
    19791 
    19792 > show #!12 models
    19793 
    19794 > show #!13 models
    19795 
    19796 > hide #!13 models
    19797 
    19798 > show #!13 models
    19799 
    19800 > show #!14 models
    19801 
    19802 > show #!15 models
    19803 
    19804 > show #!16 models
    19805 
    19806 > hide #!16 models
    19807 
    19808 > show #!16 models
    19809 
    19810 > hide #!15 models
    19811 
    19812 > hide #!14 models
    19813 
    19814 > hide #!12 models
    19815 
    19816 > hide #!11 models
    19817 
    19818 > hide #!10 models
    19819 
    19820 > show #!12 models
    19821 
    19822 > hide #!16 models
    19823 
    19824 > show #!14 models
    19825 
    19826 > show #!15 models
    19827 
    19828 > hide #!13 models
    19829 
    19830 > hide #!12 models
    19831 
    19832 > color #14.4 #ff9300ff models
    19833 
    19834 [Repeated 1 time(s)]
    19835 
    19836 > color #15.6 #ff9300ff models
    19837 
    19838 > lighting soft
    19839 
    19840 > lighting flat
    19841 
    19842 > lighting full
    19843 
    19844 > lighting flat
    19845 
    19846 > lighting soft
    19847 
    19848 > lighting full
    19849 
    19850 > lighting soft
    19851 
    19852 > lighting simple
    19853 
    19854 > lighting full
    19855 
    19856 > color #15.4 #929000ff models
    19857 
    19858 > color #15.4 #4f8f00ff models
    19859 
    19860 > color #15.4 #009051ff models
    19861 
    19862 > color #15.4 #00fa92ff models
    19863 
    19864 > undo
    19865 
    19866 [Repeated 7 time(s)]
    19867 
    19868 > show #!7 models
    19869 
    19870 > hide #!7 models
    19871 
    19872 > hide #!15 models
    19873 
    19874 > color #14.4 #ff9300ff models
    19875 
    19876 > color #15.6 #ff9300ff models
    19877 
    19878 > show #!15 models
    19879 
    19880 > hide #!14 models
    19881 
    19882 > show #!12 models
    19883 
    19884 > color #15.4 #008f00ff models
    19885 
    19886 > color #15.4 #4f8f00ff models
    19887 
    19888 > color #15.4 #929000ff models
    19889 
    19890 > color #15.4 #4f8f00ff models
    19891 
    19892 > lighting full
    19893 
    19894 > color #15.4 #008f00ff models
    19895 
    19896 > color #15.4 #929000ff models
    19897 
    19898 > color #15.4 #fffb00ff models
    19899 
    19900 > color #15.4 #4f8f00ff models
    19901 
    19902 > color #15.4 #336600ff models
    19903 
    19904 > color #15.4 #4f8f00ff models
    19905 
    19906 [Repeated 1 time(s)]
    19907 
    19908 > hide #!15 models
    19909 
    19910 > hide #!12 models
    19911 
    19912 > show #!11 models
    19913 
    19914 > color #15.4 #008f00ff models
    19915 
    19916 > color #15.4 #4f8f00ff models
    19917 
    19918 > show #!15 models
    19919 
    19920 > hide #!15 models
    19921 
    19922 > hide #!11 models
    19923 
    19924 > show #!11 models
    19925 
    19926 > color #11.4 #929000ff models
    19927 
    19928 > color #11.4 #4f8f00ff models
    19929 
    19930 > color #11.4 #336600ff models
    19931 
    19932 > color #11.4 #669933ff models
    19933 
    19934 > color #11.4 #99cc33ff models
    19935 
    19936 > color #11.4 #ccff99ff models
    19937 
    19938 > color #11.4 #669900ff models
    19939 
    19940 > show #!15 models
    19941 
    19942 > hide #!15 models
    19943 
    19944 > show #!15 models
    19945 
    19946 > hide #!15 models
    19947 
    19948 > color #15.4 #669900ff models
    19949 
    19950 > show #!12 models
    19951 
    19952 > color #12.4 #669900ff models
    19953 
    19954 > hide #!12 models
    19955 
    19956 > show #!15 models
    19957 
    19958 > lighting soft
    19959 
    19960 [Repeated 1 time(s)]
    19961 
    19962 > lighting simple
    19963 
    19964 > lighting full
    19965 
    19966 > color #15.6 #ff9900ff models
    19967 
    19968 > color #15.6 #cc9933ff models
    19969 
    19970 > color #15.6 #ff9933ff models
    19971 
    19972 > color #14.4 #ff9933ff models
    19973 
    19974 > show #!14 models
    19975 
    19976 > hide #!15 models
    19977 
    19978 > hide #!11 models
    19979 
    19980 > color #15.7 #66ff66ff models
    19981 
    19982 > color #15.7 #00cc00ff models
    19983 
    19984 > color #15.7 #66ff66ff models
    19985 
    19986 > color #14.5 #33ff33ff models
    19987 
    19988 > color #14.5 #00cc00ff models
    19989 
    19990 > color #14.5 #66ff66ff models
    19991 
    19992 > color #14.5 #33cc33ff models
    19993 
    19994 > color #14.5 #99ff99ff models
    19995 
    19996 [Repeated 1 time(s)]
    19997 
    19998 > color #14.5 #66cc66ff models
    19999 
    20000 > color #14.5 #336633ff models
    20001 
    20002 > color #14.5 #33cc33ff models
    20003 
    20004 > color #14.5 #339900ff models
    20005 
    20006 > color #14.5 #66ff33ff models
    20007 
    20008 > color #14.5 #ccffccff models
    20009 
    20010 > color #14.5 #99cc99ff models
    20011 
    20012 > color #14.5 #73fa79ff models
    20013 
    20014 > color #14.5 #00fa92ff models
    20015 
    20016 > color #14.5 #d4fb79ff models
    20017 
    20018 > color #14.5 #73fa79ff models
    20019 
    20020 [Repeated 1 time(s)]
    20021 
    20022 > color #14.5 #66ff66ff models
    20023 
    20024 > color #14.5 #66ff99ff models
    20025 
    20026 > color #14.5 #00cc33ff models
    20027 
    20028 > color #14.5 #009933ff models
    20029 
    20030 > color #14.5 #00cc33ff models
    20031 
    20032 > color #14.5 #33cc33ff models
    20033 
    20034 > color #14.5 #99ff99ff models
    20035 
    20036 > color #14.5 #66cc66ff models
    20037 
    20038 > show #!12 models
    20039 
    20040 > hide #!12 models
    20041 
    20042 > color #14.5 #99ff99ff models
    20043 
    20044 > graphics silhouettes true depthJump 0.005
    20045 
    20046 > color #14.5 #73fcd6ff models
    20047 
    20048 > color #14.5 #73fa79ff models
    20049 
    20050 > color #14.5 #66ff66ff models
    20051 
    20052 > color #14.5 #73fa79ff models
    20053 
    20054 > color #14.5 #33ff33ff models
    20055 
    20056 > color #14.5 #66ff66ff models
    20057 
    20058 > color #14.5 #66ff99ff models
    20059 
    20060 > color #14.5 #33ff66ff models
    20061 
    20062 > color #14.5 #66ff99ff models
    20063 
    20064 > color #14.5 #33cc66ff models
    20065 
    20066 > color #14.5 #33ff99ff models
    20067 
    20068 > color #14.5 #99ffccff models
    20069 
    20070 > color #14.5 #99ff99ff models
    20071 
    20072 > color #14.5 #66cc66ff models
    20073 
    20074 > color #14.5 #99ff99ff models
    20075 
    20076 > color #14.5 #33cc33ff models
    20077 
    20078 > color #14.5 #99ff99ff models
    20079 
    20080 > lighting full
    20081 
    20082 > lighting simple
    20083 
    20084 > lighting soft
    20085 
    20086 > lighting full
    20087 
    20088 > lighting soft
    20089 
    20090 > lighting simple
    20091 
    20092 > color #14.5 #73fa79ff models
    20093 
    20094 > lighting full
    20095 
    20096 [Repeated 2 time(s)]
    20097 
    20098 > lighting soft
    20099 
    20100 > lighting simple
    20101 
    20102 > lighting full
    20103 
    20104 > color #14.5 #66ff66ff models
    20105 
    20106 > color #14.5 #99ff99ff models
    20107 
    20108 > color #14.5 #66ff66ff models
    20109 
    20110 > color #14.5 #73fa79ff models
    20111 
    20112 > color #15.7 #73fa79ff models
    20113 
    20114 > hide #!14 models
    20115 
    20116 > show #!15 models
    20117 
    20118 > show #!12 models
    20119 
    20120 > show #!13 models
    20121 
    20122 > hide #!13 models
    20123 
    20124 > show #!11 models
    20125 
    20126 > hide #!11 models
    20127 
    20128 > show #!11 models
    20129 
    20130 > hide #!11 models
    20131 
    20132 > show #!10 models
    20133 
    20134 > hide #!10 models
    20135 
    20136 > show #!10 models
    20137 
    20138 > show #!16 models
    20139 
    20140 > color #16.5 #669900ff models
    20141 
    20142 > show #!17 models
    20143 
    20144 > hide #!17 models
    20145 
    20146 > hide #!16 models
    20147 
    20148 > show #!16 models
    20149 
    20150 > show #!11 models
    20151 
    20152 > show #!17 models
    20153 
    20154 > show #!13 models
    20155 
    20156 > show #!14 models
    20157 
    20158 > hide #!11 models
    20159 
    20160 > hide #!12 models
    20161 
    20162 > hide #!15 models
    20163 
    20164 > hide #!13 models
    20165 
    20166 > hide #!14 models
    20167 
    20168 > hide #!16 models
    20169 
    20170 > hide #!17 models
    20171 
    20172 > graphics silhouettes true depthJump 0.005
    20173 
    20174 > lighting full
    20175 
    20176 > graphics silhouettes true depthJump 0.008
    20177 
    20178 > graphics silhouettes true depthJump 0.01
    20179 
    20180 > lighting full
    20181 
    20182 > graphics silhouettes true depthJump 0.01
    20183 
    20184 > color #10.5 #990000ff models
    20185 
    20186 > color #10.5 #941100ff models
    20187 
    20188 [Repeated 1 time(s)]
    20189 
    20190 > show #!11 models
    20191 
    20192 > show #!12 models
    20193 
    20194 > show #!13 models
    20195 
    20196 > show #!14 models
    20197 
    20198 > show #!15 models
    20199 
    20200 > show #!16 models
    20201 
    20202 > show #!17 models
    20203 
    20204 > hide #!10 models
    20205 
    20206 > hide #!11 models
    20207 
    20208 > hide #!12 models
    20209 
    20210 > hide #!13 models
    20211 
    20212 > hide #!14 models
    20213 
    20214 > hide #!16 models
    20215 
    20216 > show #!16 models
    20217 
    20218 > hide #!16 models
    20219 
    20220 > hide #!17 models
    20221 
    20222 > surface dust #15.2 size 40
    20223 
    20224 > surface dust #15.3 size 40
    20225 
    20226 > surface dust #15.4 size 40
    20227 
    20228 > surface dust #15.6 size 40
    20229 
    20230 > surface dust #15.7 size 40
    20231 
    20232 > show #!16 models
    20233 
    20234 > show #!17 models
    20235 
    20236 > hide #!17 models
    20237 
    20238 > hide #!16 models
    20239 
    20240 > show #!14 models
    20241 
    20242 > show #!13 models
    20243 
    20244 > show #!12 models
    20245 
    20246 > show #!11 models
    20247 
    20248 > show #!10 models
    20249 
    20250 > show #!16 models
    20251 
    20252 > show #!17 models
    20253 
    20254 > surface dust #10.2 size 40
    20255 
    20256 > surface dust #10.3 size 40
    20257 
    20258 > surface dust #10.4 size 40
    20259 
    20260 > surface dust #10.5 size 40
    20261 
    20262 > surface dust #10.6 size 40
    20263 
    20264 > surface dust #11.2 size 40
    20265 
    20266 > surface dust #11.3 size 40
    20267 
    20268 > surface dust #11.4 size 40
    20269 
    20270 > surface dust #11.5 size 40
    20271 
    20272 > surface dust #12.2 size 40
    20273 
    20274 > surface dust #12.3 size 40
    20275 
    20276 > surface dust #12.4 size 40
    20277 
    20278 > surface dust #12.5 size 40
    20279 
    20280 > surface dust #12.6 size 40
    20281 
    20282 > surface dust #12.7 size 40
    20283 
    20284 > surface dust #13.2 size 40
    20285 
    20286 > surface dust #13.3 size 40
    20287 
    20288 > surface dust #13.4 size 40
    20289 
    20290 > surface dust #14.2 size 40
    20291 
    20292 > surface dust #14.3 size 40
    20293 
    20294 > surface dust #14.4 size 40
    20295 
    20296 > surface dust #14.5 size 40
    20297 
    20298 > surface dust #15.2 size 40
    20299 
    20300 > surface dust #15.3 size 40
    20301 
    20302 > surface dust #15.4 size 40
    20303 
    20304 > surface dust #15.6 size 40
    20305 
    20306 > surface dust #15.7 size 40
    20307 
    20308 > surface dust #16.2 size 40
    20309 
    20310 > surface dust #16.3 size 40
    20311 
    20312 > surface dust #16.4 size 40
    20313 
    20314 > surface dust #16.5 size 40
    20315 
    20316 > surface dust #16.6 size 40
    20317 
    20318 > surface dust #16.7 size 40
    20319 
    20320 > surface dust #17.2 size 40
    20321 
    20322 > surface dust #17.3 size 40
    20323 
    20324 > surface dust #17.4 size 40
    20325 
    20326 > surface dust #17.5 size 40
    20327 
    20328 > surface dust #17.6 size 40
    20329 
    20330 > surface undust all
    20331 
    20332 > ui tool show "Map Eraser"
    20333 
    20334 > select add #18
    20335 
    20336 211268 atoms, 225060 bonds, 4422 pseudobonds, 17444 residues, 7 models
    20337 selected 
    20338 
    20339 Can only have one displayed volume when erasing 
    20340 
    20341 > undo
    20342 
    20343 > ui tool show "Map Eraser"
    20344 
    20345 > select add #18
    20346 
    20347 211268 atoms, 225060 bonds, 4422 pseudobonds, 17444 residues, 7 models
    20348 selected 
    20349 
    20350 > select add #52
    20351 
    20352 430586 atoms, 460206 bonds, 10242 pseudobonds, 35554 residues, 9 models
    20353 selected 
    20354 
    20355 > select subtract #52
    20356 
    20357 209652 atoms, 223254 bonds, 4355 pseudobonds, 17368 residues, 5 models
    20358 selected 
    20359 
    20360 > select add #53
    20361 
    20362 410810 atoms, 441229 bonds, 9585 pseudobonds, 33826 residues, 8 models
    20363 selected 
    20364 
    20365 > select subtract #53
    20366 
    20367 205848 atoms, 221047 bonds, 4355 pseudobonds, 16928 residues, 4 models
    20368 selected 
    20369 
    20370 > select add #58
    20371 
    20372 209136 atoms, 224719 bonds, 4513 pseudobonds, 17082 residues, 4 models
    20373 selected 
    20374 
    20375 > select subtract #58
    20376 
    20377 1 model selected 
    20378 
    20379 Can only have one displayed volume when erasing 
    20380 
    20381 [Repeated 3 time(s)]
    20382 
    20383 > hide #!17 models
    20384 
    20385 > hide #!16 models
    20386 
    20387 > hide #!15 models
    20388 
    20389 > hide #!14 models
    20390 
    20391 > hide #!11 models
    20392 
    20393 > hide #!12 models
    20394 
    20395 > hide #!13 models
    20396 
    20397 > show #!11 models
    20398 
    20399 > show #!12 models
    20400 
    20401 > show #!13 models
    20402 
    20403 > show #!14 models
    20404 
    20405 > show #!15 models
    20406 
    20407 > show #!16 models
    20408 
    20409 > show #!17 models
    20410 
    20411 > hide #!10.2 models
    20412 
    20413 > hide #!10.3 models
    20414 
    20415 > show #!10.2 models
    20416 
    20417 > show #!10.3 models
    20418 
    20419 > hide #!10-17#!10.1-6#!11.1-5#!12.1-7#!13.1-4#!14.1-5#!15.1-7#!16.1-7#!17.1-6
    20420 > target m
    20421 
    20422 > show #!10.2 models
    20423 
    20424 > show #!11.2 models
    20425 
    20426 > hide #!11.2 models
    20427 
    20428 > show #!11.2 models
    20429 
    20430 > show #!12.2 models
    20431 
    20432 > show #!13.2 models
    20433 
    20434 > show #!14.2 models
    20435 
    20436 > show #!15.2 models
    20437 
    20438 > show #!16.2 models
    20439 
    20440 > show #!17.2 models
    20441 
    20442 > hide #!17 models
    20443 
    20444 > hide #!16 models
    20445 
    20446 > hide #!15 models
    20447 
    20448 > hide #!14 models
    20449 
    20450 > hide #!13 models
    20451 
    20452 > hide #!12 models
    20453 
    20454 > hide #!11 models
    20455 
    20456 > hide #!10 models
    20457 
    20458 > hide #!10.2 models
    20459 
    20460 > show #!10.2 models
    20461 
    20462 > volume erase #10.2 center 282.93,416.04,267.14 radius 49.408
    20463 
    20464 > hide #!10 models
    20465 
    20466 > show #!11 models
    20467 
    20468 > volume erase #11.2 center 282.93,416.04,267.14 radius 49.408
    20469 
    20470 > hide #!11 models
    20471 
    20472 > show #!12 models
    20473 
    20474 > volume erase #12.2 center 282.93,416.04,267.14 radius 49.408
    20475 
    20476 > show #!11 models
    20477 
    20478 > hide #!12 models
    20479 
    20480 > show #!12 models
    20481 
    20482 > hide #!11 models
    20483 
    20484 > show #!11 models
    20485 
    20486 > hide #!12 models
    20487 
    20488 > volume erase #11.2 center 282.93,416.04,267.14 radius 49.408
    20489 
    20490 > hide #!11 models
    20491 
    20492 > show #!12 models
    20493 
    20494 > volume erase #12.2 center 282.93,416.04,267.14 radius 49.408
    20495 
    20496 > hide #!12 models
    20497 
    20498 > show #!13 models
    20499 
    20500 > volume erase #13.2 center 282.93,416.04,267.14 radius 49.408
    20501 
    20502 > hide #!13 models
    20503 
    20504 > show #!14 models
    20505 
    20506 > volume erase #14.2 center 282.93,416.04,267.14 radius 49.408
    20507 
    20508 > hide #!14 models
    20509 
    20510 > show #!15 models
    20511 
    20512 > volume erase #15.2 center 282.93,416.04,267.14 radius 49.408
    20513 
    20514 > hide #!15 models
    20515 
    20516 > show #!16 models
    20517 
    20518 > volume erase #16.2 center 282.93,416.04,267.14 radius 49.408
    20519 
    20520 > hide #!16 models
    20521 
    20522 > show #!17 models
    20523 
    20524 > volume erase #17.2 center 282.93,416.04,267.14 radius 49.408
    20525 
    20526 > show #!16 models
    20527 
    20528 > show #!15 models
    20529 
    20530 > show #!14 models
    20531 
    20532 > show #!13 models
    20533 
    20534 > show #!12 models
    20535 
    20536 > show #!11 models
    20537 
    20538 > show #!10 models
    20539 
    20540 > surface dust #10.2 size 40
    20541 
    20542 > surface dust #11.2 size 40
    20543 
    20544 > surface dust #12.2 size 40
    20545 
    20546 > surface dust #13.2 size 40
    20547 
    20548 > surface dust #14.2 size 40
    20549 
    20550 > surface dust #15.2 size 40
    20551 
    20552 > surface dust #16.2 size 40
    20553 
    20554 > surface dust #17.2 size 40
    20555 
    20556 > surface undust all
    20557 
    20558 > show #!10.3 models
    20559 
    20560 > show #!10.4 models
    20561 
    20562 > show #!10.5 models
    20563 
    20564 > show #!10.6 models
    20565 
    20566 > show #!11.3 models
    20567 
    20568 > show #!11.4 models
    20569 
    20570 > show #!11.5 models
    20571 
    20572 > show #!12.3 models
    20573 
    20574 > show #!12.4 models
    20575 
    20576 > show #!12.5 models
    20577 
    20578 > show #!12.6 models
    20579 
    20580 > show #!12.7 models
    20581 
    20582 > show #!13.3 models
    20583 
    20584 > show #!13.4 models
    20585 
    20586 > show #!14.3 models
    20587 
    20588 > show #!14.4 models
    20589 
    20590 > show #!14.5 models
    20591 
    20592 > show #!15.3 models
    20593 
    20594 > show #!15.5 models
    20595 
    20596 > show #!15.4 models
    20597 
    20598 > hide #!15.5 models
    20599 
    20600 > show #!15.5 models
    20601 
    20602 > hide #!15.5 models
    20603 
    20604 > show #!15.5 models
    20605 
    20606 > hide #!15.5 models
    20607 
    20608 > show #!15.5 models
    20609 
    20610 > show #!15.6 models
    20611 
    20612 > show #!15.7 models
    20613 
    20614 > hide #!15.5 models
    20615 
    20616 > show #!16.3 models
    20617 
    20618 > show #!16.4 models
    20619 
    20620 > show #!16.5 models
    20621 
    20622 > show #!16.6 models
    20623 
    20624 > show #!16.7 models
    20625 
    20626 > show #!17.3 models
    20627 
    20628 > show #!17.4 models
    20629 
    20630 > show #!17.5 models
    20631 
    20632 > show #!17.6 models
    20633 
    20634 > hide #!11 models
    20635 
    20636 > hide #!12 models
    20637 
    20638 > hide #!13 models
    20639 
    20640 > hide #!14 models
    20641 
    20642 > hide #!15 models
    20643 
    20644 > hide #!16 models
    20645 
    20646 > hide #!17 models
    20647 
    20648 > lighting full
    20649 
    20650 > lighting soft
    20651 
    20652 > lighting simple
    20653 
    20654 > lighting soft
    20655 
    20656 > lighting flat
    20657 
    20658 > lighting soft
    20659 
    20660 > lighting full
    20661 
    20662 > lighting soft
    20663 
    20664 > graphics silhouettes true depthJump 0.01
    20665 
    20666 > graphics silhouettes true depthJump 0.005
    20667 
    20668 > graphics silhouettes true depthJump 0.005 width 1
    20669 
    20670 > graphics silhouettes true depthJump 0.005 width 2
    20671 
    20672 > surface dust #10.2 size 40
    20673 
    20674 > surface dust #10.3 size 40
    20675 
    20676 > surface dust #10.4 size 40
    20677 
    20678 > surface dust #10.5 size 40
    20679 
    20680 > surface dust #10.6 size 40
    20681 
    20682 > graphics silhouettes true depthJump 0.01 width 2
    20683 
    20684 > lighting full
    20685 
    20686 > graphics silhouettes true depthJump 0.01 width 2
    20687 
    20688 > graphics silhouettes true depthJump 0.012
    20689 
    20690 > graphics silhouettes true depthJump 0.01
    20691 
    20692 > lighting soft
    20693 
    20694 > graphics silhouettes true depthJump 0.01
    20695 
    20696 > lighting full
    20697 
    20698 > graphics silhouettes true depthJump 0.02
    20699 
    20700 > graphics silhouettes true depthJump 0.01
    20701 
    20702 > graphics silhouettes true depthJump 0.02
    20703 
    20704 > graphics silhouettes true depthJump 0.01
    20705 
    20706 > graphics silhouettes true depthJump 0.01 width 1.5
    20707 
    20708 > graphics silhouettes true depthJump 0.01 width 2
    20709 
    20710 > graphics silhouettes true depthJump 0.01 width 1.5
    20711 
    20712 [Repeated 1 time(s)]
    20713 
    20714 > show #!11 models
    20715 
    20716 > hide #!10 models
    20717 
    20718 > show #!15 models
    20719 
    20720 > hide #!15 models
    20721 
    20722 > hide #!11 models
    20723 
    20724 > show #!10 models
    20725 
    20726 > show #!15 models
    20727 
    20728 > hide #!10 models
    20729 
    20730 > hide #!15 models
    20731 
    20732 > show #!12 models
    20733 
    20734 > hide #!12 models
    20735 
    20736 > show #!11 models
    20737 
    20738 > hide #!11 models
    20739 
    20740 > show #!17 models
    20741 
    20742 > hide #!17 models
    20743 
    20744 > show #!17 models
    20745 
    20746 > hide #!17 models
    20747 
    20748 > show #!10 models
    20749 
    20750 > hide #!10 models
    20751 
    20752 > show #!15 models
    20753 
    20754 > hide #!15 models
    20755 
    20756 > show #!10 models
    20757 
    20758 > hide #!10 models
    20759 
    20760 > show #!12 models
    20761 
    20762 > show #!10 models
    20763 
    20764 > hide #!12 models
    20765 
    20766 > hide #!10 models
    20767 
    20768 > show #!15 models
    20769 
    20770 > show #!10 models
    20771 
    20772 > show #!11 models
    20773 
    20774 > show #!12 models
    20775 
    20776 > show #!13 models
    20777 
    20778 > show #!14 models
    20779 
    20780 > show #!16 models
    20781 
    20782 > show #!17 models
    20783 
    20784 > surface dust #10.2 size 40
    20785 
    20786 > surface dust #10.3 size 40
    20787 
    20788 > surface dust #10.4 size 40
    20789 
    20790 > surface dust #10.5 size 40
    20791 
    20792 > surface dust #10.6 size 40
    20793 
    20794 > surface dust #11.2 size 40
    20795 
    20796 > surface dust #11.3 size 40
    20797 
    20798 > surface dust #11.4 size 40
    20799 
    20800 > surface dust #11.5 size 40
    20801 
    20802 > surface dust #12.2 size 40
    20803 
    20804 > surface dust #12.3 size 40
    20805 
    20806 > surface dust #12.4 size 40
    20807 
    20808 > surface dust #12.5 size 40
    20809 
    20810 > surface dust #12.6 size 40
    20811 
    20812 > surface dust #12.7 size 40
    20813 
    20814 > surface dust #13.2 size 40
    20815 
    20816 > surface dust #13.3 size 40
    20817 
    20818 > surface dust #13.4 size 40
    20819 
    20820 > surface dust #14.2 size 40
    20821 
    20822 > surface dust #14.3 size 40
    20823 
    20824 > surface dust #14.4 size 40
    20825 
    20826 > surface dust #14.5 size 40
    20827 
    20828 > surface dust #15.2 size 40
    20829 
    20830 > surface dust #15.3 size 40
    20831 
    20832 > surface dust #15.4 size 40
    20833 
    20834 > surface dust #15.6 size 40
    20835 
    20836 > surface dust #15.7 size 40
    20837 
    20838 > surface dust #16.2 size 40
    20839 
    20840 > surface dust #16.3 size 40
    20841 
    20842 > surface dust #16.4 size 40
    20843 
    20844 > surface dust #16.5 size 40
    20845 
    20846 > surface dust #16.6 size 40
    20847 
    20848 > surface dust #16.7 size 40
    20849 
    20850 > surface dust #17.2 size 40
    20851 
    20852 > surface dust #17.3 size 40
    20853 
    20854 > surface dust #17.4 size 40
    20855 
    20856 > surface dust #17.5 size 40
    20857 
    20858 > surface dust #17.6 size 40
    20859 
    20860 > graphics silhouettes true depthJump 0.01 width 1.5
    20861 
    20862 > surface undust all
    20863 
    20864 > hide #!11 models
    20865 
    20866 > hide #!12 models
    20867 
    20868 > hide #!13 models
    20869 
    20870 > hide #!14 models
    20871 
    20872 > hide #!15 models
    20873 
    20874 > hide #!16 models
    20875 
    20876 > hide #!17 models
    20877 
    20878 > show #!17 models
    20879 
    20880 > hide #!10 models
    20881 
    20882 > hide #!17 models
    20883 
    20884 > show #!10 models
    20885 
    20886 > surface dust #10.2 size 40
    20887 
    20888 > surface dust #10.3 size 40
    20889 
    20890 > surface dust #10.4 size 40
    20891 
    20892 > surface dust #10.5 size 40
    20893 
    20894 > surface dust #10.6 size 40
    20895 
    20896 > hide #!10 models
    20897 
    20898 > show #!11 models
    20899 
    20900 > surface dust #11.* size 10
    20901 
    20902 > surface dust #11.* size 15
    20903 
    20904 > surface dust #11.* size 10
    20905 
    20906 > surface dust #11.* size 15
    20907 
    20908 > surface dust #11.* size 20
    20909 
    20910 > show #!16 models
    20911 
    20912 > show #!17 models
    20913 
    20914 > surface dust #11.* size 20
    20915 
    20916 > surface dust all size 20
    20917 
    20918 > surface undust all
    20919 
    20920 > surface dust all size 20
    20921 
    20922 > hide #!11 models
    20923 
    20924 > show #!10 models
    20925 
    20926 > hide #!16 models
    20927 
    20928 > hide #!17 models
    20929 
    20930 > hide #!10 models
    20931 
    20932 > show #!11 models
    20933 
    20934 > show #!10 models
    20935 
    20936 > hide #!10 models
    20937 
    20938 > hide #!11 models
    20939 
    20940 > show #!12 models
    20941 
    20942 > hide #!12 models
    20943 
    20944 > show #!13 models
    20945 
    20946 > hide #!13 models
    20947 
    20948 > show #!14 models
    20949 
    20950 > hide #!14 models
    20951 
    20952 > show #!15 models
    20953 
    20954 > hide #!15 models
    20955 
    20956 > show #!16 models
    20957 
    20958 > hide #!16 models
    20959 
    20960 > show #!17 models
    20961 
    20962 > hide #!17 models
    20963 
    20964 > show #!16 models
    20965 
    20966 > hide #!16 models
    20967 
    20968 > show #!17 models
    20969 
    20970 > hide #!17 models
    20971 
    20972 > show #!16 models
    20973 
    20974 > show #!15 models
    20975 
    20976 > hide #!16 models
    20977 
    20978 > show #!16 models
    20979 
    20980 > hide #!15 models
    20981 
    20982 > hide #!16 models
    20983 
    20984 > show #!10 models
    20985 
    20986 > save
    20987 > /Users/campbell/Desktop/Chimera_sessions/RibosomeFigures/Manuscript1/Ribofigs/PlaceholderDensitiesColoured.cxs
    20988 > includeMaps true
    20989 
    20990 ——— End of log from Mon Feb 9 13:25:44 2026 ———
    20991 
    20992 > view name session-start
    20993 
    20994 opened ChimeraX session 
    20995 
    20996 > close #1-9
    20997 
    20998 > hide #!10 models
    20999 
    21000 > show #!50 models
    21001 
    21002 > show #!10 models
    21003 
    21004 > hide #!10 models
    21005 
    21006 > show #!10 models
    21007 
    21008 > hide #!10 models
    21009 
    21010 > show #!10 models
    21011 
    21012 > hide #!10 models
    21013 
    21014 > show #!10 models
    21015 
    21016 > hide #!10 models
    21017 
    21018 > open
    21019 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/60S_filtsharp.mrc
    21020 
    21021 Opened 60S_filtsharp.mrc as #1, grid size 270,270,270, pixel 2.59, shown at
    21022 level 0.00474, step 2, values float32 
    21023 
    21024 > open
    21025 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Decoding_filtsharp.mrc
    21026 
    21027 Opened Decoding_filtsharp.mrc as #2, grid size 270,270,270, pixel 2.59, shown
    21028 at level 0.00591, step 2, values float32 
    21029 
    21030 > open
    21031 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Hibernating_filtsharp.mrc
    21032 
    21033 Opened Hibernating_filtsharp.mrc as #3, grid size 270,270,270, pixel 2.59,
    21034 shown at level 0.00507, step 2, values float32 
    21035 
    21036 > open
    21037 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Int_Post_filtsharp.mrc
    21038 
    21039 Opened Int_Post_filtsharp.mrc as #4, grid size 270,270,270, pixel 2.59, shown
    21040 at level 0.00705, step 2, values float32 
    21041 
    21042 > open
    21043 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Post_filtsharp.mrc
    21044 
    21045 Opened Post_filtsharp.mrc as #5, grid size 270,270,270, pixel 2.59, shown at
    21046 level 0.00678, step 2, values float32 
    21047 
    21048 > open
    21049 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Rotated_filtlocal.mrc
    21050 
    21051 Opened Rotated_filtlocal.mrc as #6, grid size 270,270,270, pixel 2.59, shown
    21052 at level 0.00572, step 2, values float32 
    21053 
    21054 > open
    21055 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/Translocating_filtsharp.mrc
    21056 
    21057 Opened Translocating_filtsharp.mrc as #7, grid size 270,270,270, pixel 2.59,
    21058 shown at level 0.00737, step 2, values float32 
    21059 
    21060 > open
    21061 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/UnPre_cEF2_filtsharp.mrc
    21062 
    21063 Opened UnPre_cEF2_filtsharp.mrc as #8, grid size 270,270,270, pixel 2.59,
    21064 shown at level 0.00661, step 2, values float32 
    21065 
    21066 > open
    21067 > /Users/campbell/Desktop/Chimera_sessions/Manuscript1/Ribofigs/MMS_Outputs/UnPre_none_filtsharp.mrc
    21068 
    21069 Opened UnPre_none_filtsharp.mrc as #9, grid size 270,270,270, pixel 2.59,
    21070 shown at level 0.00679, step 2, values float32 
    21071 
    21072 > hide #!6 models
    21073 
    21074 > hide #!7 models
    21075 
    21076 > hide #!8 models
    21077 
    21078 > hide #!9 models
    21079 
    21080 > hide #!5 models
    21081 
    21082 > hide #!3 models
    21083 
    21084 > hide #!2 models
    21085 
    21086 > hide #!1 models
    21087 
    21088 > select add #1
    21089 
    21090 2 models selected 
    21091 
    21092 > select add #2
    21093 
    21094 4 models selected 
    21095 
    21096 > select add #3
    21097 
    21098 6 models selected 
    21099 
    21100 > select add #4
    21101 
    21102 8 models selected 
    21103 
    21104 > select add #5
    21105 
    21106 10 models selected 
    21107 
    21108 > select add #6
    21109 
    21110 12 models selected 
    21111 
    21112 > select add #7
    21113 
    21114 14 models selected 
    21115 
    21116 > select add #8
    21117 
    21118 16 models selected 
    21119 
    21120 > select add #9
    21121 
    21122 18 models selected 
    21123 
    21124 > show #!9 models
    21125 
    21126 > show #!8 models
    21127 
    21128 > show #!7 models
    21129 
    21130 > show #!6 models
    21131 
    21132 > show #!5 models
    21133 
    21134 > show #!3 models
    21135 
    21136 > show #!2 models
    21137 
    21138 > show #!1 models
    21139 
    21140 > ui mousemode right "translate selected models"
    21141 
    21142 > view matrix models
    21143 > #1,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#2,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#3,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#4,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#5,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#6,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#7,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#8,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752,#9,1,0,0,-99.311,0,1,0,-92.141,0,0,1,-88.752
    21144 
    21145 > view matrix models
    21146 > #1,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#2,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#3,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#4,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#5,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#6,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#7,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#8,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994,#9,1,0,0,-93.216,0,1,0,-92.554,0,0,1,-94.994
    21147 
    21148 > fitmap #1-9 inMap #50 eachModel true
    21149 
    21150 Fit map 60S_filtsharp.mrc in map Stable_60S.mrc using 24602 points 
    21151 correlation = 0.9809, correlation about mean = 0.8158, overlap = 157.4 
    21152 steps = 68, shift = 9.98, angle = 0.489 degrees 
    21153  
    21154 Position of 60S_filtsharp.mrc (#1) relative to Stable_60S.mrc (#50)
    21155 coordinates: 
    21156 Matrix rotation and translation 
    21157 0.99996477 0.00271877 0.00794088 -104.59673004 
    21158 -0.00273096 0.99999511 0.00152560 -88.45841411 
    21159 -0.00793670 -0.00154724 0.99996731 -96.64636027 
    21160 Axis -0.18005898 0.93037749 -0.31933757 
    21161 Axis point -13546.02255497 0.00000000 13851.11643574 
    21162 Rotation angle (degrees) 0.48890331 
    21163 Shift along axis -32.60332315 
    21164  
    21165 Fit map Decoding_filtsharp.mrc in map Stable_60S.mrc using 24603 points 
    21166 correlation = 0.7661, correlation about mean = 0.3548, overlap = 146.9 
    21167 steps = 68, shift = 1.56, angle = 1.22 degrees 
    21168  
    21169 Position of Decoding_filtsharp.mrc (#2) relative to Stable_60S.mrc (#50)
    21170 coordinates: 
    21171 Matrix rotation and translation 
    21172 0.99978543 0.01842905 0.00945807 -103.58550562 
    21173 -0.01847433 0.99981818 0.00472265 -87.42783098 
    21174 -0.00936932 -0.00489637 0.99994412 -89.07491303 
    21175 Axis -0.22616677 0.44267820 -0.86768923 
    21176 Axis point -6265.48455578 4786.76384566 0.00000000 
    21177 Rotation angle (degrees) 1.21850512 
    21178 Shift along axis 62.01454742 
    21179  
    21180 Fit map Hibernating_filtsharp.mrc in map Stable_60S.mrc using 24595 points 
    21181 correlation = 0.7787, correlation about mean = 0.3281, overlap = 134.3 
    21182 steps = 124, shift = 1.88, angle = 0.348 degrees 
    21183  
    21184 Position of Hibernating_filtsharp.mrc (#3) relative to Stable_60S.mrc (#50)
    21185 coordinates: 
    21186 Matrix rotation and translation 
    21187 0.99998606 0.00424485 0.00313938 -96.85319710 
    21188 -0.00425426 0.99998646 0.00299732 -91.34594373 
    21189 -0.00312661 -0.00301064 0.99999058 -91.62821309 
    21190 Axis -0.49453184 0.51577108 -0.69958448 
    21191 Axis point -29386.34291212 15160.94795480 0.00000000 
    21192 Rotation angle (degrees) 0.34803932 
    21193 Shift along axis 64.88506941 
    21194  
    21195 Fit map Int_Post_filtsharp.mrc in map Stable_60S.mrc using 24597 points 
    21196 correlation = 0.7677, correlation about mean = 0.4114, overlap = 151.8 
    21197 steps = 100, shift = 1.92, angle = 0.736 degrees 
    21198  
    21199 Position of Int_Post_filtsharp.mrc (#4) relative to Stable_60S.mrc (#50)
    21200 coordinates: 
    21201 Matrix rotation and translation 
    21202 0.99992591 0.01129012 0.00455062 -99.73906411 
    21203 -0.01130875 0.99992770 0.00408847 -89.47259647 
    21204 -0.00450413 -0.00413963 0.99998129 -90.72777167 
    21205 Axis -0.32018121 0.35234943 -0.87939403 
    21206 Axis point -10451.94233830 6491.33116998 0.00000000 
    21207 Rotation angle (degrees) 0.73622044 
    21208 Shift along axis 80.19441703 
    21209  
    21210 Fit map Post_filtsharp.mrc in map Stable_60S.mrc using 24580 points 
    21211 correlation = 0.7762, correlation about mean = 0.3382, overlap = 141.9 
    21212 steps = 68, shift = 1.44, angle = 1.09 degrees 
    21213  
    21214 Position of Post_filtsharp.mrc (#5) relative to Stable_60S.mrc (#50)
    21215 coordinates: 
    21216 Matrix rotation and translation 
    21217 0.99983572 0.01463852 0.01068893 -102.80757104 
    21218 -0.01470011 0.99987567 0.00570619 -89.10295876 
    21219 -0.01060407 -0.00586238 0.99992659 -88.56750963 
    21220 Axis -0.30401739 0.55957176 -0.77100770 
    21221 Axis point -8002.48470410 5901.46486618 0.00000000 
    21222 Rotation angle (degrees) 1.09018415 
    21223 Shift along axis 49.68202171 
    21224  
    21225 Fit map Rotated_filtlocal.mrc in map Stable_60S.mrc using 24591 points 
    21226 correlation = 0.7945, correlation about mean = 0.3187, overlap = 116.6 
    21227 steps = 52, shift = 2.17, angle = 0.361 degrees 
    21228  
    21229 Position of Rotated_filtlocal.mrc (#6) relative to Stable_60S.mrc (#50)
    21230 coordinates: 
    21231 Matrix rotation and translation 
    21232 0.99999328 -0.00033420 -0.00364982 -93.66539986 
    21233 0.00031548 0.99998680 -0.00512742 -90.38927379 
    21234 0.00365149 0.00512624 0.99998019 -96.85802277 
    21235 Axis 0.81350364 -0.57927107 0.05154461 
    21236 Axis point 0.00000000 18523.80778301 -20933.31884960 
    21237 Rotation angle (degrees) 0.36108943 
    21238 Shift along axis -28.82976129 
    21239  
    21240 Fit map Translocating_filtsharp.mrc in map Stable_60S.mrc using 24585 points 
    21241 correlation = 0.7526, correlation about mean = 0.4031, overlap = 145.7 
    21242 steps = 148, shift = 2.33, angle = 0.592 degrees 
    21243  
    21244 Position of Translocating_filtsharp.mrc (#7) relative to Stable_60S.mrc (#50)
    21245 coordinates: 
    21246 Matrix rotation and translation 
    21247 0.99997185 0.00183802 -0.00727434 -93.01035156 
    21248 -0.00188972 0.99997296 -0.00710675 -89.08814824 
    21249 0.00726108 0.00712029 0.99994829 -98.44500029 
    21250 Axis 0.68802502 -0.70293850 -0.18027492 
    21251 Axis point 13048.83984956 0.00000000 -14385.57490879 
    21252 Rotation angle (degrees) 0.59239406 
    21253 Shift along axis 16.37720473 
    21254  
    21255 Fit map UnPre_cEF2_filtsharp.mrc in map Stable_60S.mrc using 24582 points 
    21256 correlation = 0.7576, correlation about mean = 0.3255, overlap = 153.5 
    21257 steps = 64, shift = 2.01, angle = 0.925 degrees 
    21258  
    21259 Position of UnPre_cEF2_filtsharp.mrc (#8) relative to Stable_60S.mrc (#50)
    21260 coordinates: 
    21261 Matrix rotation and translation 
    21262 0.99993896 0.00231071 0.01080433 -98.48723583 
    21263 -0.00243774 0.99992789 0.01175860 -94.35051032 
    21264 -0.01077638 -0.01178422 0.99987249 -86.22920269 
    21265 Axis -0.72914228 0.66837401 -0.14706368 
    21266 Axis point 0.00000000 -7149.42191612 9198.28293016 
    21267 Rotation angle (degrees) 0.92503371 
    21268 Shift along axis 21.43096244 
    21269  
    21270 Fit map UnPre_none_filtsharp.mrc in map Stable_60S.mrc using 24588 points 
    21271 correlation = 0.7601, correlation about mean = 0.3714, overlap = 158.7 
    21272 steps = 84, shift = 1.8, angle = 0.854 degrees 
    21273  
    21274 Position of UnPre_none_filtsharp.mrc (#9) relative to Stable_60S.mrc (#50)
    21275 coordinates: 
    21276 Matrix rotation and translation 
    21277 0.99992702 0.00706930 0.00979663 -99.82492071 
    21278 -0.00715453 0.99993663 0.00869245 -92.05152250 
    21279 -0.00973456 -0.00876190 0.99991423 -87.63465742 
    21280 Axis -0.58558505 0.65526167 -0.47720257 
    21281 Axis point -7111.91642493 0.00000000 7748.31283723 
    21282 Rotation angle (degrees) 0.85393039 
    21283 Shift along axis 39.95763005 
    21284  
    21285 
    21286 > select clear
    21287 
    21288 > hide #!1 models
    21289 
    21290 > hide #!2 models
    21291 
    21292 > show #!2 models
    21293 
    21294 > hide #!3 models
    21295 
    21296 > hide #!4 models
    21297 
    21298 > hide #!5 models
    21299 
    21300 > hide #!6 models
    21301 
    21302 > hide #!7 models
    21303 
    21304 > hide #!8 models
    21305 
    21306 > hide #!9 models
    21307 
    21308 > hide #!2 models
    21309 
    21310 > show #!58 models
    21311 
    21312 > hide #!50 models
    21313 
    21314 Drag select of 17082 residues, 11 pseudobonds 
    21315 
    21316 > select subtract #58/ET
    21317 
    21318 207492 atoms, 11 pseudobonds, 17005 residues, 2 models selected 
    21319 
    21320 > show #!52 models
    21321 
    21322 > hide #!58 models
    21323 
    21324 Drag select of 593 residues 
    21325 
    21326 > show #!53 models
    21327 
    21328 > hide #!52 models
    21329 
    21330 Drag select of 364 residues 
    21331 
    21332 > show #!52 models
    21333 
    21334 > show #!58 models
    21335 
    21336 > show #!2 models
    21337 
    21338 > ui tool show "Color Zone"
    21339 
    21340 > color zone #2 near sel distance 60
    21341 
    21342 > hide #!52 models
    21343 
    21344 > hide #!53 models
    21345 
    21346 > hide #!58 models
    21347 
    21348 > volume splitbyzone #2
    21349 
    21350 Opened Decoding_filtsharp.mrc 0 as #18.1, grid size 270,270,270, pixel 2.59,
    21351 shown at level 0.00591, step 1, values float32 
    21352 Opened Decoding_filtsharp.mrc 1 as #18.2, grid size 270,270,270, pixel 2.59,
    21353 shown at level 0.00591, step 1, values float32 
    21354 Opened Decoding_filtsharp.mrc 2 as #18.3, grid size 270,270,270, pixel 2.59,
    21355 shown at level 0.00591, step 1, values float32 
    21356 Opened Decoding_filtsharp.mrc 3 as #18.4, grid size 270,270,270, pixel 2.59,
    21357 shown at level 0.00591, step 1, values float32 
    21358 Opened Decoding_filtsharp.mrc 4 as #18.5, grid size 270,270,270, pixel 2.59,
    21359 shown at level 0.00591, step 1, values float32 
    21360 Opened Decoding_filtsharp.mrc 5 as #18.6, grid size 270,270,270, pixel 2.59,
    21361 shown at level 0.00591, step 1, values float32 
    21362 Opened Decoding_filtsharp.mrc 6 as #18.7, grid size 270,270,270, pixel 2.59,
    21363 shown at level 0.00591, step 1, values float32 
    21364 
    21365 > hide #!18.1 models
    21366 
    21367 > color #18.2 #d6d6d618 models
    21368 
    21369 > color #18.2 #d6d6d61b models
    21370 
    21371 > color #18.2 #d6d6d61a models
    21372 
    21373 > color #18.3 #a9a9a93f models
    21374 
    21375 > show #!52 models
    21376 
    21377 > hide #!52 models
    21378 
    21379 > show #!53 models
    21380 
    21381 > volume all step 1
    21382 
    21383 > show #!10 models
    21384 
    21385 > hide #!10 models
    21386 
    21387 > show #!2 models
    21388 
    21389 > hide #!18 models
    21390 
    21391 > hide #!53 models
    21392 
    21393 > ui tool show "Side View"
    21394 
    21395 > show #!52 models
    21396 
    21397 > hide #!52 models
    21398 
    21399 > show #!53 models
    21400 
    21401 > select clear
    21402 
    21403 Drag select of 2 Decoding_filtsharp.mrc 
    21404 
    21405 > select clear
    21406 
    21407 > hide #!2 models
    21408 
    21409 > show #!2 models
    21410 
    21411 > hide #!2 models
    21412 
    21413 > show #!2 models
    21414 
    21415 > hide #!2 models
    21416 
    21417 > show #!2 models
    21418 
    21419 > hide #!2 models
    21420 
    21421 > show #!2 models
    21422 
    21423 > hide #!2 models
    21424 
    21425 > show #!2 models
    21426 
    21427 > hide #!2 models
    21428 
    21429 > show #!2 models
    21430 
    21431 > hide #!2 models
    21432 
    21433 > show #!18 models
    21434 
    21435 > hide #!53 models
    21436 
    21437 > hide #!18 models
    21438 
    21439 > show #!3 models
    21440 
    21441 > hide #!3 models
    21442 
    21443 > show #!61 models
    21444 
    21445 > show #!3 models
    21446 
    21447 > hide #!61 models
    21448 
    21449 > lighting simple
    21450 
    21451 > show #!53 models
    21452 
    21453 > ui tool show "Side View"
    21454 
    21455 > color #3 #b2ffff73 models
    21456 
    21457 > color #3 #b2ffff00 models
    21458 
    21459 > color #3 #b2ffffff models
    21460 
    21461 > ui tool show "Side View"
    21462 
    21463 > open 6tnu1
    21464 
    21465 '6tnu1' has no suffix 
     2943[deleted to fit within ticket limits]
     2944
    214662945
    214672946> open 6tnu