Changes between Initial Version and Version 1 of Ticket #3950


Ignore:
Timestamp:
Nov 18, 2020, 9:45:16 AM (5 years ago)
Author:
Eric Pettersen
Comment:

Seems to be because of a surface cap in a NamedView

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #3950

    • Property Component Unassigned → Sessions
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → After closing some models from restored session, session save fails

  • Ticket #3950 – Description

    initial v1  
    2929> regulation\Figures\CimeraSessions\ChmX_Figure3_ArfA-BrfA.cxs" format session
    3030
    31 Log from Fri Nov 13 01:13:06 2020UCSF ChimeraX version: 1.2.dev202011040611
    32 (2020-11-04) 
    33 © 2016-2020 Regents of the University of California. All rights reserved. 
    34 
    35 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    36 > regulation\Figures\CimeraSessions\ChmX_Figure3_ArfA-BrfA.cxs" format session
    37 
    38 Log from Thu Nov 12 16:47:41 2020UCSF ChimeraX version: 1.2.dev202011040611
    39 (2020-11-04) 
    40 © 2016-2020 Regents of the University of California. All rights reserved. 
    41 
    42 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    43 > regulation\Figures\CimeraSessions\ChmX_Figure3_ArfA-BrfA.cxs" format session
    44 
    45 Frozen name "4v8q_30S" not restored: nothing is selected by specifier 
    46 
    47 Log from Wed Nov 11 01:27:39 2020UCSF ChimeraX version: 1.2.dev202011040611
    48 (2020-11-04) 
    49 © 2016-2020 Regents of the University of California. All rights reserved. 
    50 
    51 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    52 > regulation\Figures\CimeraSessions\ChmX_Figure3_ArfA-BrfA.cxs" format session
    53 
    54 registering illegal selector name "4v8q_30S" 
    55 
    56 Log from Tue Nov 10 00:04:42 2020UCSF ChimeraX version: 1.2.dev202011040611
    57 (2020-11-04) 
    58 © 2016-2020 Regents of the University of California. All rights reserved. 
    59 
    60 > open "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    61 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    62 
    63 registering illegal selector name "4v8q_30S" 
    64 
    65 Log from Fri Nov 6 22:29:56 2020UCSF ChimeraX version: 1.2.dev202011040611
    66 (2020-11-04) 
    67 © 2016-2020 Regents of the University of California. All rights reserved. 
    68 
    69 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    70 > regulation\Figures\CimeraSessions\ChmX_Figure1_Trans-Transl_v2.cxs" format
    71 > session
    72 
    73 registering illegal selector name "4v8q_30S" 
    74 
    75 Log from Tue Nov 3 01:00:53 2020UCSF ChimeraX version: 1.1 (2020-09-09) 
    76 © 2016-2020 Regents of the University of California. All rights reserved. 
    77 
    78 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    79 > regulation\Figures\CimeraSessions\ChmX_Figure1_Trans-Transl_v2.cxs" format
    80 > session
    81 
    82 registering illegal selector name "4v8q_30S" 
    83 
    84 Log from Mon Nov 2 20:45:29 2020UCSF ChimeraX version: 1.1 (2020-09-09) 
    85 © 2016-2020 Regents of the University of California. All rights reserved. 
    86 
    87 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    88 > regulation\Figures\CimeraSessions\ChmX_Figure1_Trans-Transl.cxs" format
    89 > session
    90 
    91 registering illegal selector name "4v8q_30S" 
    92 
    93 Log from Sat Oct 31 00:45:10 2020UCSF ChimeraX version: 1.1 (2020-09-09) 
    94 © 2016-2020 Regents of the University of California. All rights reserved. 
    95 
    96 > open "C:\Users\claud\Documents\Reviews\FrontiersReview-Translation
    97 > regulation\Figures\CimeraSessions\ChmX_Figure1_Trans-Transl.cxs" format
    98 > session
    99 
    100 registering illegal selector name "4v8q_30S" 
    101 
    102 Log from Thu Oct 29 23:19:02 2020UCSF ChimeraX version: 1.1 (2020-09-09) 
    103 © 2016-2020 Regents of the University of California. All rights reserved. 
    104 
    105 > open "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    106 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    107 
    108 registering illegal selector name "4v8q_30S" 
    109 
    110 Log from Thu Oct 29 18:44:58 2020 Startup Messages 
    111 --- 
    112 warning | Your computer has Intel graphics driver 7870 with a known bug that
    113 causes all Qt user interface panels to be blank. ChimeraX can partially fix
    114 this but may make some panel titlebars and edges black. Hopefully newer Intel
    115 graphics drivers will fix this. 
    116  
    117 UCSF ChimeraX version: 1.1 (2020-09-09) 
    118 © 2016-2020 Regents of the University of California. All rights reserved. 
    119 How to cite UCSF ChimeraX 
    120 
    121 > open C:/Users/claud/Downloads/4v8q-pdb-bundle.tar/4v8q-pdb-
    122 > bundle/4v8q_withEF-Tu.pdb
    123 
    124 Summary of feedback from opening C:/Users/claud/Downloads/4v8q-pdb-
    125 bundle.tar/4v8q-pdb-bundle/4v8q_withEF-Tu.pdb 
    126 --- 
    127 warning | Ignored bad PDB record found on line 155403 
    128 END 
    129  
    130 Chain information for 4v8q_withEF-Tu.pdb #1 
    131 --- 
    132 Chain | Description 
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    192  
    193 
    194 > open C:/Users/claud/Downloads/6q97-pdb-bundle.tar/6q97_A-site.pdb
    195 
    196 Summary of feedback from opening C:/Users/claud/Downloads/6q97-pdb-
    197 bundle.tar/6q97_A-site.pdb 
    198 --- 
    199 warning | Ignored bad PDB record found on line 157976 
    200 END 
    201  
    202 Chain information for 6q97_A-site.pdb #2 
    203 --- 
    204 Chain | Description 
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    265  
    266 
    267 > open C:/Users/claud/Downloads/4v6t-pdb-bundle.tar/4v6t_withEF-G.pdb
    268 
    269 Summary of feedback from opening C:/Users/claud/Downloads/4v6t-pdb-
    270 bundle.tar/4v6t_withEF-G.pdb 
    271 --- 
    272 warning | Ignored bad PDB record found on line 158154 
    273 END 
    274  
    275 Chain information for 4v6t_withEF-G.pdb #3 
    276 --- 
    277 Chain | Description 
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    334  
    335 
    336 > open C:/Users/claud/Downloads/6q98-pdb-bundle.tar/6q98_P-site.pdb
    337 
    338 Summary of feedback from opening C:/Users/claud/Downloads/6q98-pdb-
    339 bundle.tar/6q98_P-site.pdb 
    340 --- 
    341 warning | Ignored bad PDB record found on line 155175 
    342 END 
    343  
    344 Chain information for 6q98_P-site.pdb #4 
    345 --- 
    346 Chain | Description 
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    404  
    405 
    406 > open C:/Users/claud/Downloads/6q9a-pdb-bundle.tar/6q9a_PastP-site.pdb
    407 
    408 Summary of feedback from opening C:/Users/claud/Downloads/6q9a-pdb-
    409 bundle.tar/6q9a_PastP-site.pdb 
    410 --- 
    411 warning | Ignored bad PDB record found on line 156504 
    412 END 
    413  
    414 Chain information for 6q9a_PastP-site.pdb #5 
    415 --- 
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    475  
    476 
    477 > hide #5 models
    478 
    479 > show #5 models
    480 
    481 > hide #5 models
    482 
    483 > show #5 models
    484 
    485 > show cartoons
    486 
    487 > hide atoms
    488 
    489 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    490 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    491 
    492 > lighting soft
    493 
    494 > lighting simple
    495 
    496 > lighting soft
    497 
    498 > lighting full
    499 
    500 > lighting flat
    501 
    502 > lighting shadows true intensity 0.5
    503 
    504 > lighting shadows false
    505 
    506 > lighting shadows true
    507 
    508 > lighting shadows false
    509 
    510 > graphics silhouettes false
    511 
    512 > graphics silhouettes true
    513 
    514 > lighting soft
    515 
    516 > lighting full
    517 
    518 > lighting simple
    519 
    520 > set bgColor white
    521 
    522 > set bgColor black
    523 
    524 > set bgColor gray
    525 
    526 > set bgColor black
    527 
    528 > preset cartoons/nucleotides ribbons/slabs
    529 
    530 Changed 775741 atom styles 
    531 Preset expands to these ChimeraX commands:
    532 
    533    
    534    
    535     show nucleic
    536     hide protein|solvent|H
    537     surf hide
    538     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    539     cartoon
    540     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    541     cartoon style ~(nucleic|strand) x round
    542     cartoon style (nucleic|strand) x rect
    543     nucleotides tube/slab shape box
    544 
    545  
    546 
    547 > hide #!2 models
    548 
    549 > hide #!3 models
    550 
    551 > hide #!4 models
    552 
    553 > hide #5 models
    554 
    555 > select up
    556 
    557 20 atoms, 21 bonds, 1 residue, 1 model selected 
    558 
    559 > select up
    560 
    561 62479 atoms, 69979 bonds, 2901 residues, 1 model selected 
    562 
    563 > select clear
    564 
    565 > lighting flat
    566 
    567 > lighting flat
    568 
    569 > lighting simple
    570 
    571 > nucleotides #!1 fill
    572 
    573 > style nucleic & #!1 stick
    574 
    575 Changed 102049 atom styles 
    576 
    577 > show #!1 atoms
    578 
    579 > hide #!1 atoms
    580 
    581 > select up
    582 
    583 1530 atoms, 1680 bonds, 89 residues, 1 model selected 
    584 
    585 > select up
    586 
    587 5504 atoms, 5732 bonds, 587 residues, 1 model selected 
    588 
    589 > select up
    590 
    591 154205 atoms, 167270 bonds, 11420 residues, 1 model selected 
    592 
    593 > select up
    594 
    595 777380 atoms, 843073 bonds, 57530 residues, 5 models selected 
    596 
    597 > select down
    598 
    599 154205 atoms, 167270 bonds, 11420 residues, 1 model selected 
    600 
    601 > select clear
    602 
    603 > select up
    604 
    605 70163 atoms, 78192 bonds, 3547 residues, 1 model selected 
    606 
    607 > select up
    608 
    609 92785 atoms, 101216 bonds, 6521 residues, 1 model selected 
    610 
    611 > ui tool show "Color Actions"
    612 
    613 > color sel dark gray
    614 
    615 > color sel light gray
    616 
    617 > color sel dark gray
    618 
    619 > color sel gray
    620 
    621 > color sel dark gray
    622 
    623 > select clear
    624 
    625 > select #1/4:44
    626 
    627 22 atoms, 24 bonds, 1 residue, 1 model selected 
    628 
    629 > select up
    630 
    631 1640 atoms, 1832 bonds, 77 residues, 1 model selected 
    632 
    633 > ui tool show "Color Actions"
    634 
    635 > color sel light sky blue
    636 
    637 > select clear
    638 
    639 > select #1/D:48
    640 
    641 9 atoms, 8 bonds, 1 residue, 1 model selected 
    642 
    643 > select up
    644 
    645 600 atoms, 606 bonds, 72 residues, 1 model selected 
    646 
    647 > select up
    648 
    649 2375 atoms, 2412 bonds, 291 residues, 1 model selected 
    650 
    651 > color sel dark gray
    652 
    653 > select clear
    654 
    655 > select up
    656 
    657 1640 atoms, 1832 bonds, 77 residues, 1 model selected 
    658 
    659 > color sel forest green
    660 
    661 > select clear
    662 
    663 > select #1/7:197
    664 
    665 8 atoms, 7 bonds, 1 residue, 1 model selected 
    666 
    667 > select up
    668 
    669 123 atoms, 126 bonds, 14 residues, 1 model selected 
    670 
    671 > select up
    672 
    673 3015 atoms, 3075 bonds, 381 residues, 1 model selected 
    674 
    675 > ui tool show "Color Actions"
    676 
    677 > color sel medium purple
    678 
    679 > select clear
    680 
    681 > select #1/6:22
    682 
    683 23 atoms, 25 bonds, 1 residue, 1 model selected 
    684 
    685 > select up
    686 
    687 1305 atoms, 1454 bonds, 62 residues, 1 model selected 
    688 
    689 > ui tool show "Color Actions"
    690 
    691 > color sel cornflower blue
    692 
    693 > select clear
    694 
    695 > select up
    696 
    697 112 atoms, 112 bonds, 13 residues, 1 model selected 
    698 
    699 > select up
    700 
    701 1184 atoms, 1203 bonds, 144 residues, 1 model selected 
    702 
    703 > ui tool show "Color Actions"
    704 
    705 > color sel fire brick
    706 
    707 > select clear
    708 
    709 > select #1/i:162
    710 
    711 22 atoms, 24 bonds, 1 residue, 1 model selected 
    712 Drag select of 218 residues 
    713 
    714 > select clear
    715 
    716 > select up
    717 
    718 34442 atoms, 38310 bonds, 1764 residues, 1 model selected 
    719 
    720 > select up
    721 
    722 49162 atoms, 53289 bonds, 3600 residues, 1 model selected 
    723 
    724 > select down
    725 
    726 34442 atoms, 38310 bonds, 1764 residues, 1 model selected 
    727 
    728 > select down
    729 
    730 181 atoms, 21 residues, 1 model selected 
    731 
    732 > select up
    733 
    734 34442 atoms, 38310 bonds, 1764 residues, 1 model selected 
    735 
    736 > select up
    737 
    738 49162 atoms, 53289 bonds, 3600 residues, 1 model selected 
    739 
    740 > name frozen 4v8q_30S sel
    741 
    742 registering illegal selector name "4v8q_30S" 
    743 
    744 > ui tool show "Color Actions"
    745 
    746 > color sel light yellow
    747 
    748 > color sel lemon chiffon
    749 
    750 > color sel lemon chiffon
    751 
    752 > color sel light yellow
    753 
    754 > color sel lemon chiffon
    755 
    756 > color sel light yellow
    757 
    758 > color sel light goldenrod yellow
    759 
    760 > color sel light yellow
    761 
    762 > name frozen 4v8q_30S sel
    763 
    764 registering illegal selector name "4v8q_30S" 
    765 
    766 > name frozen 4v8q_30S sel
    767 
    768 registering illegal selector name "4v8q_30S" 
    769 
    770 > toolshed show
    771 
    772 > select clear
    773 
    774 > select #1/m:59
    775 
    776 4 atoms, 3 bonds, 1 residue, 1 model selected 
    777 
    778 > select up
    779 
    780 90 atoms, 92 bonds, 12 residues, 1 model selected 
    781 
    782 > select up
    783 
    784 1147 atoms, 1163 bonds, 151 residues, 1 model selected 
    785 
    786 > ui tool show "Color Actions"
    787 
    788 > color sel light yellow
    789 
    790 > select clear
    791 
    792 > select #1/t:39
    793 
    794 7 atoms, 6 bonds, 1 residue, 1 model selected 
    795 
    796 > select up
    797 
    798 60 atoms, 59 bonds, 8 residues, 1 model selected 
    799 
    800 > select up
    801 
    802 971 atoms, 987 bonds, 125 residues, 1 model selected 
    803 
    804 > ui tool show "Color Actions"
    805 
    806 > color sel light yellow
    807 
    808 > select clear
    809 
    810 > select #1/2:13
    811 
    812 8 atoms, 7 bonds, 1 residue, 1 model selected 
    813 
    814 > select up
    815 
    816 68 atoms, 69 bonds, 7 residues, 1 model selected 
    817 
    818 > select up
    819 
    820 209 atoms, 213 bonds, 25 residues, 1 model selected 
    821 
    822 > ui tool show "Color Actions"
    823 
    824 > color sel light yellow
    825 
    826 > select clear
    827 
    828 > select #1/4:53
    829 
    830 23 atoms, 25 bonds, 1 residue, 1 model selected 
    831 
    832 > select #1/3:53
    833 
    834 23 atoms, 25 bonds, 1 residue, 1 model selected 
    835 
    836 > select up
    837 
    838 4753 atoms, 5288 bonds, 235 residues, 1 model selected 
    839 
    840 > select up
    841 
    842 8784 atoms, 9396 bonds, 741 residues, 1 model selected 
    843 
    844 > delete atoms sel
    845 
    846 > delete bonds sel
    847 
    848 > select #1/5:16
    849 
    850 20 atoms, 21 bonds, 1 residue, 1 model selected 
    851 
    852 > select up
    853 
    854 104 atoms, 116 bonds, 5 residues, 1 model selected 
    855 
    856 > delete atoms sel
    857 
    858 > delete bonds sel
    859 
    860 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    861 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    862 
    863 > select #1
    864 
    865 145317 atoms, 157758 bonds, 10674 residues, 1 model selected 
    866 
    867 > show sel surfaces
    868 
    869 > select clear
    870 
    871 > hide sel cartoons
    872 
    873 > select clear
    874 
    875 Drag select of 4v8q_withEF-Tu.pdb_A SES surface, 4v8q_withEF-Tu.pdb_B SES
    876 surface, 112696 of 112796 triangles, 4v8q_withEF-Tu.pdb_C SES surface,
    877 4v8q_withEF-Tu.pdb_D SES surface, 4v8q_withEF-Tu.pdb_E SES surface, 29 of
    878 62142 triangles, 4v8q_withEF-Tu.pdb_F SES surface, 4v8q_withEF-Tu.pdb_G SES
    879 surface, 65085 of 65362 triangles, 4v8q_withEF-Tu.pdb_H SES surface,
    880 4v8q_withEF-Tu.pdb_I SES surface, 4v8q_withEF-Tu.pdb_J SES surface,
    881 4v8q_withEF-Tu.pdb_K SES surface, 5776261 of 7461216 triangles, 4v8q_withEF-
    882 Tu.pdb_L SES surface, 323861 of 328776 triangles, 4v8q_withEF-Tu.pdb_M SES
    883 surface, 39768 of 218474 triangles, 4v8q_withEF-Tu.pdb_N SES surface, 38637 of
    884 291894 triangles, 4v8q_withEF-Tu.pdb_O SES surface, 4v8q_withEF-Tu.pdb_P SES
    885 surface, 4v8q_withEF-Tu.pdb_Q SES surface, 28176 of 201808 triangles,
    886 4v8q_withEF-Tu.pdb_R SES surface, 171914 of 178924 triangles, 4v8q_withEF-
    887 Tu.pdb_S SES surface, 93863 of 125096 triangles, 4v8q_withEF-Tu.pdb_U SES
    888 surface, 4v8q_withEF-Tu.pdb_V SES surface, 25123 of 110370 triangles,
    889 4v8q_withEF-Tu.pdb_W SES surface, 4v8q_withEF-Tu.pdb_X SES surface, 146966 of
    890 153360 triangles, 4v8q_withEF-Tu.pdb_Y SES surface, 4v8q_withEF-Tu.pdb_Z SES
    891 surface, 4v8q_withEF-Tu.pdb_a SES surface, 63043 of 170520 triangles,
    892 4v8q_withEF-Tu.pdb_b SES surface, 4v8q_withEF-Tu.pdb_c SES surface,
    893 4v8q_withEF-Tu.pdb_d SES surface, 4v8q_withEF-Tu.pdb_e SES surface,
    894 4v8q_withEF-Tu.pdb_f SES surface, 4v8q_withEF-Tu.pdb_g SES surface, 174238 of
    895 207322 triangles, 5153 residues 
    896 
    897 > select up
    898 
    899 73760 atoms, 80366 bonds, 5156 residues, 34 models selected 
    900 
    901 > select up
    902 
    903 89456 atoms, 97659 bonds, 6169 residues, 34 models selected 
    904 
    905 > select up
    906 
    907 93828 atoms, 102106 bonds, 6773 residues, 34 models selected 
    908 
    909 > color (#!1 & sel) dark gray
    910 
    911 > select ~sel
    912 
    913 674664 atoms, 731455 bonds, 10 pseudobonds, 50011 residues, 8 models selected 
    914 
    915 > ui tool show "Color Actions"
    916 
    917 > color sel light yellow
    918 
    919 > color sel lemon chiffon
    920 
    921 > color sel pale goldenrod
    922 
    923 > color sel lemon chiffon
    924 
    925 > select clear
    926 
    927 > select clear
    928 
    929 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    930 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    931 
    932 > show #!2 models
    933 
    934 > hide #!2 models
    935 
    936 > show #5 models
    937 
    938 > hide #5 models
    939 
    940 > show #!4 models
    941 
    942 > hide #!4 models
    943 
    944 > show #!2 models
    945 
    946 > hide #!2 models
    947 
    948 > open C:/Users/claud/Downloads/4v8q-pdb-bundle.tar/4v8q-pdb-
    949 > bundle/4v8q_withEF-Tu.pdb
    950 
    951 Summary of feedback from opening C:/Users/claud/Downloads/4v8q-pdb-
    952 bundle.tar/4v8q-pdb-bundle/4v8q_withEF-Tu.pdb 
    953 --- 
    954 warning | Ignored bad PDB record found on line 155403 
    955 END 
    956  
    957 Chain information for 4v8q_withEF-Tu.pdb #6 
    958 --- 
    959 Chain | Description 
    960 0 | No description available 
    961 1 | No description available 
    962 2 | No description available 
    963 3 4 | No description available 
    964 5 | No description available 
    965 6 | No description available 
    966 7 | No description available 
    967 A | No description available 
    968 B | No description available 
    969 C | No description available 
    970 D | No description available 
    971 E | No description available 
    972 F | No description available 
    973 G | No description available 
    974 H | No description available 
    975 I | No description available 
    976 J | No description available 
    977 K | No description available 
    978 L | No description available 
    979 M | No description available 
    980 N | No description available 
    981 O | No description available 
    982 P | No description available 
    983 Q | No description available 
    984 R | No description available 
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    986 T | No description available 
    987 U | No description available 
    988 V | No description available 
    989 W | No description available 
    990 X | No description available 
    991 Y | No description available 
    992 Z | No description available 
    993 a | No description available 
    994 b | No description available 
    995 c | No description available 
    996 d | No description available 
    997 e | No description available 
    998 f | No description available 
    999 g | No description available 
    1000 h | No description available 
    1001 i | No description available 
    1002 j | No description available 
    1003 k | No description available 
    1004 l | No description available 
    1005 m | No description available 
    1006 n | No description available 
    1007 o | No description available 
    1008 p | No description available 
    1009 q | No description available 
    1010 r | No description available 
    1011 s | No description available 
    1012 t | No description available 
    1013 u | No description available 
    1014 v | No description available 
    1015 w | No description available 
    1016 x | No description available 
    1017 y | No description available 
    1018 z | No description available 
    1019  
    1020 
    1021 > hide #!1 models
    1022 
    1023 > select #6/7:208@OE2
    1024 
    1025 1 atom, 1 residue, 1 model selected 
    1026 
    1027 > select up
    1028 
    1029 102 atoms, 107 bonds, 6 residues, 1 model selected 
    1030 
    1031 > select up
    1032 
    1033 4883 atoms, 5433 bonds, 244 residues, 1 model selected 
    1034 
    1035 > select up
    1036 
    1037 8888 atoms, 9512 bonds, 746 residues, 1 model selected 
    1038 
    1039 > select ~sel
    1040 
    1041 913809 atoms, 991319 bonds, 10 pseudobonds, 67458 residues, 9 models selected 
    1042 
    1043 > delete atoms (#!6 & sel)
    1044 
    1045 > delete bonds (#!6 & sel)
    1046 
    1047 > show #5 models
    1048 
    1049 > show #!4 models
    1050 
    1051 > show #!3 models
    1052 
    1053 > ~select #1
    1054 
    1055 623175 atoms, 675803 bonds, 10 pseudobonds, 46110 residues, 61 models selected 
    1056 
    1057 > ~select #2
    1058 
    1059 466566 atoms, 506003 bonds, 8 pseudobonds, 34492 residues, 5 models selected 
    1060 
    1061 > ~select #3
    1062 
    1063 309047 atoms, 334989 bonds, 2 pseudobonds, 23014 residues, 3 models selected 
    1064 
    1065 > ~select #4
    1066 
    1067 155169 atoms, 168230 bonds, 11529 residues, 1 model selected 
    1068 
    1069 > ~select #5
    1070 
    1071 Nothing selected 
    1072 
    1073 > show #!2 models
    1074 
    1075 > show #!1 models
    1076 
    1077 > hide #!1 models
    1078 
    1079 > hide #!2 models
    1080 
    1081 > hide #!3 models
    1082 
    1083 > hide #!4 models
    1084 
    1085 > hide #5 models
    1086 
    1087 > show #!1 models
    1088 
    1089 > hide #!1 models
    1090 
    1091 > select #6/4:47@O6
    1092 
    1093 1 atom, 1 residue, 1 model selected 
    1094 
    1095 > select up
    1096 
    1097 23 atoms, 25 bonds, 1 residue, 1 model selected 
    1098 
    1099 > select up
    1100 
    1101 1640 atoms, 1832 bonds, 77 residues, 1 model selected 
    1102 
    1103 > ui tool show "Color Actions"
    1104 
    1105 > color sel light pink
    1106 
    1107 > select #6/3:46@OP2
    1108 
    1109 1 atom, 1 residue, 1 model selected 
    1110 
    1111 > select #6/3:45@O2'
    1112 
    1113 1 atom, 1 residue, 1 model selected 
    1114 
    1115 > select #6/3:48@OP2
    1116 
    1117 1 atom, 1 residue, 1 model selected 
    1118 
    1119 > select up
    1120 
    1121 20 atoms, 21 bonds, 1 residue, 1 model selected 
    1122 
    1123 > select up
    1124 
    1125 1640 atoms, 1832 bonds, 77 residues, 1 model selected 
    1126 
    1127 > color sel forest green
    1128 
    1129 > select #6
    1130 
    1131 8888 atoms, 9512 bonds, 4 pseudobonds, 746 residues, 2 models selected 
    1132 
    1133 > show sel surfaces
    1134 
    1135 > hide sel atoms
    1136 
    1137 > ~select #6
    1138 
    1139 6 models selected 
    1140 
    1141 > select #6/4:45@OP1
    1142 
    1143 1 atom, 1 residue, 1 model selected 
    1144 
    1145 > select up
    1146 
    1147 22 atoms, 24 bonds, 1 residue, 2 models selected 
    1148 
    1149 > select up
    1150 
    1151 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    1152 
    1153 > color sel pink
    1154 
    1155 > color sel light pink
    1156 
    1157 > color sel peach puff
    1158 
    1159 > color sel navajo white
    1160 
    1161 > color sel peach puff
    1162 
    1163 > color sel light pink
    1164 
    1165 > color sel thistle
    1166 
    1167 > color sel plum
    1168 
    1169 > color sel pale violet red
    1170 
    1171 > color sel orchid
    1172 
    1173 > color sel crimson
    1174 
    1175 > color sel tomato
    1176 
    1177 > color sel crimson
    1178 
    1179 > color sel light coral
    1180 
    1181 > color sel yellow
    1182 
    1183 > show #!1 models
    1184 
    1185 > hide #!1 models
    1186 
    1187 > color sel indian red
    1188 
    1189 > color sel yellow
    1190 
    1191 > select #6/3:22@N6
    1192 
    1193 1 atom, 1 residue, 1 model selected 
    1194 
    1195 > select up
    1196 
    1197 22 atoms, 24 bonds, 1 residue, 2 models selected 
    1198 
    1199 > select up
    1200 
    1201 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    1202 
    1203 > color sel forest green
    1204 
    1205 > select up
    1206 
    1207 8888 atoms, 9512 bonds, 746 residues, 2 models selected 
    1208 
    1209 > select up
    1210 
    1211 8888 atoms, 9512 bonds, 4 pseudobonds, 746 residues, 8 models selected 
    1212 
    1213 > select up
    1214 
    1215 8888 atoms, 9512 bonds, 4 pseudobonds, 746 residues, 8 models selected 
    1216 
    1217 > select clear
    1218 
    1219 > select #6/7:127@CA
    1220 
    1221 1 atom, 1 residue, 1 model selected 
    1222 
    1223 > select up
    1224 
    1225 4 atoms, 3 bonds, 1 residue, 2 models selected 
    1226 
    1227 > select up
    1228 
    1229 113 atoms, 114 bonds, 14 residues, 2 models selected 
    1230 
    1231 > select up
    1232 
    1233 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    1234 
    1235 > color sel deep sky blue
    1236 
    1237 > color sel sky blue
    1238 
    1239 > color sel light sky blue
    1240 
    1241 > color sel aquamarine
    1242 
    1243 > color sel burly wood
    1244 
    1245 > color sel powder blue
    1246 
    1247 > color sel pale violet red
    1248 
    1249 > color sel light coral
    1250 
    1251 > color sel plum
    1252 
    1253 > color sel peach puff
    1254 
    1255 > color sel pink
    1256 
    1257 > color sel navajo white
    1258 
    1259 > color sel sandy brown
    1260 
    1261 > color sel coral
    1262 
    1263 > color sel light coral
    1264 
    1265 > select #6/6:24@O6
    1266 
    1267 1 atom, 1 residue, 1 model selected 
    1268 
    1269 > select up
    1270 
    1271 23 atoms, 25 bonds, 1 residue, 2 models selected 
    1272 
    1273 > select up
    1274 
    1275 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    1276 
    1277 > color sel cornflower blue
    1278 
    1279 > select #6/h:91@O
    1280 
    1281 1 atom, 1 residue, 1 model selected 
    1282 
    1283 > select up
    1284 
    1285 4 atoms, 3 bonds, 1 residue, 2 models selected 
    1286 
    1287 > select up
    1288 
    1289 112 atoms, 112 bonds, 13 residues, 2 models selected 
    1290 
    1291 > select up
    1292 
    1293 1184 atoms, 1203 bonds, 144 residues, 2 models selected 
    1294 
    1295 > color sel sky blue
    1296 
    1297 > color sel light sky blue
    1298 
    1299 > color sel light blue
    1300 
    1301 > color sel light steel blue
    1302 
    1303 > color sel powder blue
    1304 
    1305 > color sel dodger blue
    1306 
    1307 > color sel royal blue
    1308 
    1309 > color sel indigo
    1310 
    1311 > color sel navy
    1312 
    1313 > color sel dark blue
    1314 
    1315 > color sel medium blue
    1316 
    1317 > color sel blue
    1318 
    1319 > color sel rebecca purple
    1320 
    1321 > color sel medium orchid
    1322 
    1323 > color sel purple
    1324 
    1325 > color sel medium purple
    1326 
    1327 > color sel purple
    1328 
    1329 > color sel dark magenta
    1330 
    1331 > color sel dark orchid
    1332 
    1333 > color sel medium violet red
    1334 
    1335 > color sel orchid
    1336 
    1337 > color sel light sea green
    1338 
    1339 > color sel medium turquoise
    1340 
    1341 > color sel turquoise
    1342 
    1343 > color sel dodger blue
    1344 
    1345 > color sel medium spring green
    1346 
    1347 > color sel dark turquoise
    1348 
    1349 > color sel deep sky blue
    1350 
    1351 > color sel dark sea green
    1352 
    1353 > color sel light blue
    1354 
    1355 > color sel light pink
    1356 
    1357 > color sel pale violet red
    1358 
    1359 > color sel medium purple
    1360 
    1361 > color sel purple
    1362 
    1363 > color sel medium purple
    1364 
    1365 > select clear
    1366 
    1367 > select #6/5:18@P
    1368 
    1369 1 atom, 1 residue, 1 model selected 
    1370 
    1371 > select up
    1372 
    1373 20 atoms, 21 bonds, 1 residue, 2 models selected 
    1374 
    1375 > select up
    1376 
    1377 104 atoms, 116 bonds, 5 residues, 2 models selected 
    1378 
    1379 > color sel cyan
    1380 
    1381 > color sel deep sky blue
    1382 
    1383 > color sel cyan
    1384 
    1385 > color sel deep sky blue
    1386 
    1387 > select clear
    1388 
    1389 > select #6/4:45@C5'
    1390 
    1391 1 atom, 1 residue, 1 model selected 
    1392 
    1393 > select up
    1394 
    1395 22 atoms, 24 bonds, 1 residue, 2 models selected 
    1396 
    1397 > select up
    1398 
    1399 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    1400 
    1401 > color sel goldenrod
    1402 
    1403 > color sel sandy brown
    1404 
    1405 > color sel peach puff
    1406 
    1407 > color sel cadet blue
    1408 
    1409 > color sel steel blue
    1410 
    1411 > color sel light slate gray
    1412 
    1413 > color sel cadet blue
    1414 
    1415 > color sel slate gray
    1416 
    1417 > color sel light slate gray
    1418 
    1419 > color sel cadet blue
    1420 
    1421 > color sel steel blue
    1422 
    1423 > color sel orange
    1424 
    1425 > color sel indian red
    1426 
    1427 > color sel crimson
    1428 
    1429 > color sel sandy brown
    1430 
    1431 > color sel light pink
    1432 
    1433 > color sel chocolate
    1434 
    1435 > color sel brown
    1436 
    1437 > color sel crimson
    1438 
    1439 > color sel fire brick
    1440 
    1441 > select clear
    1442 
    1443 > select #6/7:213@CG
    1444 
    1445 1 atom, 1 residue, 1 model selected 
    1446 
    1447 > select up
    1448 
    1449 7 atoms, 7 bonds, 1 residue, 2 models selected 
    1450 
    1451 > select up
    1452 
    1453 157 atoms, 162 bonds, 19 residues, 2 models selected 
    1454 
    1455 > select up
    1456 
    1457 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    1458 
    1459 > color sel dark salmon
    1460 
    1461 > color sel salmon
    1462 
    1463 > color sel light salmon
    1464 
    1465 > color sel indian red
    1466 
    1467 > color sel light sea green
    1468 
    1469 > color sel medium turquoise
    1470 
    1471 > color sel light sea green
    1472 
    1473 > color sel indigo
    1474 
    1475 > color sel aquamarine
    1476 
    1477 > color sel light slate gray
    1478 
    1479 > color sel cadet blue
    1480 
    1481 > color sel dodger blue
    1482 
    1483 > color sel dark cyan
    1484 
    1485 > color sel medium aquamarine
    1486 
    1487 > color sel light sky blue
    1488 
    1489 > color sel pale violet red
    1490 
    1491 > select #6/4:24@C5
    1492 
    1493 1 atom, 1 residue, 1 model selected 
    1494 
    1495 > select up
    1496 
    1497 20 atoms, 21 bonds, 1 residue, 2 models selected 
    1498 
    1499 > select down
    1500 
    1501 1 atom, 1 residue, 2 models selected 
    1502 
    1503 > select clear
    1504 
    1505 > select #6/7:130@CD2
    1506 
    1507 1 atom, 1 residue, 1 model selected 
    1508 
    1509 > select up
    1510 
    1511 12 atoms, 12 bonds, 1 residue, 2 models selected 
    1512 
    1513 > select up
    1514 
    1515 41 atoms, 42 bonds, 5 residues, 2 models selected 
    1516 
    1517 > select up
    1518 
    1519 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    1520 
    1521 > color sel medium slate blue
    1522 
    1523 > color sel rebecca purple
    1524 
    1525 > color sel midnight blue
    1526 
    1527 > color sel medium turquoise
    1528 
    1529 > color sel steel blue
    1530 
    1531 > color sel dark turquoise
    1532 
    1533 > color sel royal blue
    1534 
    1535 > color sel slate blue
    1536 
    1537 > color sel purple
    1538 
    1539 > color sel dark magenta
    1540 
    1541 > color sel tan
    1542 
    1543 > color sel rosy brown
    1544 
    1545 > color sel teal
    1546 
    1547 > select #6/6:24@N3
    1548 
    1549 1 atom, 1 residue, 1 model selected 
    1550 
    1551 > select up
    1552 
    1553 23 atoms, 25 bonds, 1 residue, 2 models selected 
    1554 
    1555 > select up
    1556 
    1557 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    1558 
    1559 > color sel royal blue
    1560 
    1561 > select #6/7:321@OH
    1562 
    1563 1 atom, 1 residue, 1 model selected 
    1564 
    1565 > select up
    1566 
    1567 12 atoms, 12 bonds, 1 residue, 2 models selected 
    1568 
    1569 > select up
    1570 
    1571 59 atoms, 60 bonds, 7 residues, 2 models selected 
    1572 
    1573 > select up
    1574 
    1575 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    1576 
    1577 > color sel dark turquoise
    1578 
    1579 > color sel medium turquoise
    1580 
    1581 > color sel teal
    1582 
    1583 > color sel light sea green
    1584 
    1585 > color (#!6 & sel) #00aa7fff
    1586 
    1587 > color (#!6 & sel) #aa0000ff
    1588 
    1589 > color (#!6 & sel) #ffff7fff
    1590 
    1591 > color (#!6 & sel) #aaaaffff
    1592 
    1593 > color sel medium turquoise
    1594 
    1595 > color sel light sea green
    1596 
    1597 > select clear
    1598 
    1599 > select #6/4:47@O6
    1600 
    1601 1 atom, 1 residue, 1 model selected 
    1602 
    1603 > select up
    1604 
    1605 23 atoms, 25 bonds, 1 residue, 2 models selected 
    1606 
    1607 > select up
    1608 
    1609 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    1610 
    1611 > select up
    1612 
    1613 8888 atoms, 9512 bonds, 746 residues, 2 models selected 
    1614 
    1615 > color sel chocolate
    1616 
    1617 > select clear
    1618 
    1619 > select #6/4:48@O5'
    1620 
    1621 1 atom, 1 residue, 1 model selected 
    1622 
    1623 > select #6/5:18@C6
    1624 
    1625 1 atom, 1 residue, 1 model selected 
    1626 
    1627 > select up
    1628 
    1629 20 atoms, 21 bonds, 1 residue, 2 models selected 
    1630 
    1631 > select up
    1632 
    1633 104 atoms, 116 bonds, 5 residues, 2 models selected 
    1634 
    1635 > color sel deep sky blue
    1636 
    1637 > select #6/3:28@O2
    1638 
    1639 1 atom, 1 residue, 1 model selected 
    1640 
    1641 > select up
    1642 
    1643 20 atoms, 21 bonds, 1 residue, 2 models selected 
    1644 
    1645 > select up
    1646 
    1647 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    1648 
    1649 > color sel forest green
    1650 
    1651 > select #6/h:139@NH1
    1652 
    1653 1 atom, 1 residue, 1 model selected 
    1654 
    1655 > select up
    1656 
    1657 11 atoms, 10 bonds, 1 residue, 2 models selected 
    1658 
    1659 > select up
    1660 
    1661 92 atoms, 91 bonds, 11 residues, 2 models selected 
    1662 
    1663 > select up
    1664 
    1665 1184 atoms, 1203 bonds, 144 residues, 2 models selected 
    1666 
    1667 > color sel aquamarine
    1668 
    1669 > color sel medium aquamarine
    1670 
    1671 > color sel medium purple
    1672 
    1673 > select #6/6:40@N4
    1674 
    1675 1 atom, 1 residue, 1 model selected 
    1676 
    1677 > select up
    1678 
    1679 20 atoms, 21 bonds, 1 residue, 2 models selected 
    1680 
    1681 > select up
    1682 
    1683 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    1684 
    1685 > color sel royal blue
    1686 
    1687 > select #6/7:367@OD1
    1688 
    1689 1 atom, 1 residue, 1 model selected 
    1690 
    1691 > select up
    1692 
    1693 8 atoms, 7 bonds, 1 residue, 2 models selected 
    1694 
    1695 > select up
    1696 
    1697 64 atoms, 64 bonds, 8 residues, 2 models selected 
    1698 
    1699 > select up
    1700 
    1701 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    1702 
    1703 > color sel sky blue
    1704 
    1705 > color sel aquamarine
    1706 
    1707 > color sel sky blue
    1708 
    1709 > color sel pale green
    1710 
    1711 > color sel sky blue
    1712 
    1713 > color sel steel blue
    1714 
    1715 > color sel light sea green
    1716 
    1717 > color sel sky blue
    1718 
    1719 > color sel light blue
    1720 
    1721 > color sel light sky blue
    1722 
    1723 > color sel powder blue
    1724 
    1725 > color sel dark slate gray
    1726 
    1727 > color sel cadet blue
    1728 
    1729 > color sel steel blue
    1730 
    1731 > color sel medium turquoise
    1732 
    1733 > color sel light sea green
    1734 
    1735 > color sel medium turquoise
    1736 
    1737 > color sel dark khaki
    1738 
    1739 > color sel salmon
    1740 
    1741 > color sel light salmon
    1742 
    1743 > color sel dark salmon
    1744 
    1745 > color sel yellow
    1746 
    1747 > color sel gold
    1748 
    1749 > color sel green yellow
    1750 
    1751 > color sel sandy brown
    1752 
    1753 > color sel misty rose
    1754 
    1755 > color sel papaya whip
    1756 
    1757 > color sel cornsilk
    1758 
    1759 > color sel peach puff
    1760 
    1761 > color sel honeydew
    1762 
    1763 > color sel pale turquoise
    1764 
    1765 > color sel powder blue
    1766 
    1767 > color sel dark sea green
    1768 
    1769 > color sel rosy brown
    1770 
    1771 > color sel pale violet red
    1772 
    1773 > color sel light sky blue
    1774 
    1775 > color sel sky blue
    1776 
    1777 > color sel light sky blue
    1778 
    1779 > select clear
    1780 
    1781 > show #!1 models
    1782 
    1783 > hide #!1 models
    1784 
    1785 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    1786 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    1787 
    1788 > show #!1 models
    1789 
    1790 > hide #!1 models
    1791 
    1792 > show #!1 models
    1793 
    1794 > hide #!1 models
    1795 
    1796 > ui mousemode right "rotate selected models"
    1797 
    1798 > ui mousemode right rotate
    1799 
    1800 > show #!1 models
    1801 
    1802 > hide #!1 models
    1803 
    1804 > show #!1 models
    1805 
    1806 > hide #!1 models
    1807 
    1808 > lighting flat
    1809 
    1810 > graphics silhouettes false
    1811 
    1812 > graphics silhouettes true
    1813 
    1814 > lighting shadows true intensity 0.5
    1815 
    1816 > lighting shadows false
    1817 
    1818 > lighting shadows true
    1819 
    1820 > lighting shadows false
    1821 
    1822 > lighting shadows true
    1823 
    1824 > lighting shadows false
    1825 
    1826 > lighting shadows true
    1827 
    1828 > lighting shadows false
    1829 
    1830 > lighting shadows true
    1831 
    1832 > lighting shadows false
    1833 
    1834 > lighting flat
    1835 
    1836 > lighting flat
    1837 
    1838 > lighting flat
    1839 
    1840 > lighting shadows true intensity 0.5
    1841 
    1842 > lighting flat
    1843 
    1844 > graphics silhouettes false
    1845 
    1846 > graphics silhouettes true
    1847 
    1848 > lighting simple
    1849 
    1850 > lighting soft
    1851 
    1852 > lighting full
    1853 
    1854 > lighting soft
    1855 
    1856 > set bgColor white
    1857 
    1858 > view
    1859 
    1860 > view
    1861 
    1862 > show #!1 models
    1863 
    1864 > view
    1865 
    1866 > lighting shadows true intensity 0.5
    1867 
    1868 > lighting shadows false
    1869 
    1870 > lighting shadows true
    1871 
    1872 > lighting shadows false
    1873 
    1874 > lighting shadows true
    1875 
    1876 > lighting shadows false
    1877 
    1878 > ui tool show "Side View"
    1879 
    1880 > hide #!1 models
    1881 
    1882 > view 1
    1883 
    1884 Expected an objects specifier or a view name or a keyword 
    1885 
    1886 > view list
    1887 
    1888 No named views. 
    1889 
    1890 > view list
    1891 
    1892 No named views. 
    1893 
    1894 > view list
    1895 
    1896 No named views. 
    1897 
    1898 > view 1
    1899 
    1900 Expected an objects specifier or a view name or a keyword 
    1901 
    1902 > view 1
    1903 
    1904 Expected an objects specifier or a view name or a keyword 
    1905 
    1906 > view 1
    1907 
    1908 Expected an objects specifier or a view name or a keyword 
    1909 
    1910 > view list
    1911 
    1912 No named views. 
    1913 
    1914 > lighting flat
    1915 
    1916 > lighting shadows true intensity 0.5
    1917 
    1918 > lighting shadows false
    1919 
    1920 > lighting shadows true
    1921 
    1922 > lighting flat
    1923 
    1924 > view 1, save
    1925 
    1926 Expected an objects specifier or a view name or a keyword 
    1927 
    1928 > view 1, save
    1929 
    1930 Expected an objects specifier or a view name or a keyword 
    1931 
    1932 > view 1, save
    1933 
    1934 Expected an objects specifier or a view name or a keyword 
    1935 
    1936 > safe view 1
    1937 
    1938 Unknown command: safe view 1 
    1939 
    1940 > view
    1941 
    1942 > view list
    1943 
    1944 No named views. 
    1945 
    1946 > view list
    1947 
    1948 No named views. 
    1949 
    1950 > view list
    1951 
    1952 No named views. 
    1953 
    1954 > view
    1955 
    1956 > hide #!6 models
    1957 
    1958 > show #!1 models
    1959 
    1960 > view 1
    1961 
    1962 Expected an objects specifier or a view name or a keyword 
    1963 
    1964 > view
    1965 
    1966 > show #!6 models
    1967 
    1968 > hide #!1 models
    1969 
    1970 > view #1, store
    1971 
    1972 Expected an objects specifier or a view name or a keyword 
    1973 
    1974 > view #1, save
    1975 
    1976 Expected an objects specifier or a view name or a keyword 
    1977 
    1978 > view #1
    1979 
    1980 > show #!1 models
    1981 
    1982 > hide #!1 models
    1983 
    1984 > view #2
    1985 
    1986 > view
    1987 
    1988 > show #!1 models
    1989 
    1990 > hide #!6 models
    1991 
    1992 > show #!6 models
    1993 
    1994 > hide #!6 models
    1995 
    1996 > show #!6 models
    1997 
    1998 > hide #!1 models
    1999 
    2000 > hide #!6 models
    2001 
    2002 > show #!2 models
    2003 
    2004 > select #2
    2005 
    2006 156609 atoms, 169800 bonds, 2 pseudobonds, 11618 residues, 2 models selected 
    2007 
    2008 > show sel surfaces
    2009 
    2010 > select clear
    2011 
    2012 > lighting soft
    2013 
    2014 > lighting shadows true intensity 0.5
    2015 
    2016 > lighting shadows false
    2017 
    2018 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2019 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2020 
    2021 > select #2/4:253@O2
    2022 
    2023 1 atom, 1 residue, 1 model selected 
    2024 
    2025 > hide sel cartoons
    2026 
    2027 > select #2
    2028 
    2029 156609 atoms, 169800 bonds, 2 pseudobonds, 11618 residues, 2 models selected 
    2030 
    2031 > ~select #2
    2032 
    2033 60 models selected 
    2034 
    2035 > select #2
    2036 
    2037 156609 atoms, 169800 bonds, 2 pseudobonds, 11618 residues, 2 models selected 
    2038 
    2039 > hide sel surfaces
    2040 
    2041 > hide sel atoms
    2042 
    2043 > select clear
    2044 
    2045 > select #2/8:65
    2046 
    2047 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2048 
    2049 > select clear
    2050 
    2051 > hide #!2 cartoons
    2052 
    2053 > show #!2 surfaces
    2054 
    2055 > select #2/4:268@C2'
    2056 
    2057 1 atom, 1 residue, 1 model selected 
    2058 
    2059 > ui mousemode right rotate
    2060 
    2061 > select up
    2062 
    2063 63 atoms, 67 bonds, 3 residues, 4 models selected 
    2064 
    2065 > select up
    2066 
    2067 10416 atoms, 11644 bonds, 488 residues, 4 models selected 
    2068 
    2069 > show sel cartoons
    2070 
    2071 > hide sel surfaces
    2072 
    2073 > color (#!2 & sel) red
    2074 
    2075 > select ~sel
    2076 
    2077 766964 atoms, 831429 bonds, 12 pseudobonds, 57042 residues, 46 models selected 
    2078 
    2079 > select ~sel
    2080 
    2081 10416 atoms, 11644 bonds, 2 pseudobonds, 488 residues, 2 models selected 
    2082 
    2083 > select ~sel
    2084 
    2085 766964 atoms, 831429 bonds, 12 pseudobonds, 57042 residues, 46 models selected 
    2086 
    2087 > show sel & #!2 cartoons
    2088 
    2089 > hide sel & #!2 surfaces
    2090 
    2091 > select clear
    2092 
    2093 > select #2/5:98
    2094 
    2095 8 atoms, 7 bonds, 1 residue, 1 model selected 
    2096 
    2097 > select up
    2098 
    2099 51 atoms, 50 bonds, 6 residues, 2 models selected 
    2100 
    2101 > select up
    2102 
    2103 1170 atoms, 1191 bonds, 145 residues, 2 models selected 
    2104 
    2105 > color (#!2 & sel) red
    2106 
    2107 > select #2/4:322
    2108 
    2109 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2110 
    2111 > select up
    2112 
    2113 10467 atoms, 11694 bonds, 494 residues, 5 models selected 
    2114 
    2115 > select up
    2116 
    2117 11591 atoms, 12835 bonds, 638 residues, 5 models selected 
    2118 
    2119 > delete atoms (#!2 & sel)
    2120 
    2121 > delete bonds (#!2 & sel)
    2122 
    2123 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2124 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2125 
    2126 opened ChimeraX session 
    2127 Drag select of 4888 residues 
    2128 
    2129 > select up
    2130 
    2131 86528 atoms, 94589 bonds, 5803 residues, 32 models selected 
    2132 
    2133 > color (#!2 & sel) dark gray
    2134 
    2135 > select ~sel
    2136 
    2137 679261 atoms, 735649 bonds, 12 pseudobonds, 51089 residues, 9 models selected 
    2138 
    2139 > ui tool show "Side View"
    2140 
    2141 > ui tool show "Color Actions"
    2142 
    2143 > color sel lemon chiffon
    2144 
    2145 > select clear
    2146 
    2147 > select #2/P:61
    2148 
    2149 7 atoms, 6 bonds, 1 residue, 1 model selected 
    2150 
    2151 > select up
    2152 
    2153 155 atoms, 156 bonds, 19 residues, 2 models selected 
    2154 
    2155 > select up
    2156 
    2157 1897 atoms, 1922 bonds, 244 residues, 3 models selected 
    2158 
    2159 > select up
    2160 
    2161 145018 atoms, 156965 bonds, 10980 residues, 3 models selected 
    2162 
    2163 > select down
    2164 
    2165 1897 atoms, 1922 bonds, 244 residues, 57 models selected 
    2166 
    2167 > select up
    2168 
    2169 2025 atoms, 2050 bonds, 260 residues, 4 models selected 
    2170 
    2171 > select up
    2172 
    2173 3827 atoms, 3875 bonds, 502 residues, 5 models selected 
    2174 
    2175 > color sel dark gray
    2176 
    2177 > select clear
    2178 
    2179 > show #!2 surfaces
    2180 
    2181 > hide #!2 cartoons
    2182 
    2183 Drag select of 6q97_A-site.pdb_1 SES surface, 7095268 of 7969538 triangles,
    2184 6q97_A-site.pdb_2 SES surface, 65767 of 4256176 triangles, 6q97_A-site.pdb_3
    2185 SES surface, 350150 of 350468 triangles, 6q97_A-site.pdb_6 SES surface,
    2186 6q97_A-site.pdb_B SES surface, 280804 of 295732 triangles, 6q97_A-site.pdb_C
    2187 SES surface, 216075 of 231886 triangles, 6q97_A-site.pdb_D SES surface,
    2188 6q97_A-site.pdb_E SES surface, 156585 of 190010 triangles, 6q97_A-site.pdb_F
    2189 SES surface, 95125 of 189188 triangles, 6q97_A-site.pdb_G SES surface, 6q97_A-
    2190 site.pdb_H SES surface, 19557 of 153748 triangles, 6q97_A-site.pdb_J SES
    2191 surface, 6q97_A-site.pdb_K SES surface, 6110 of 121150 triangles, 6q97_A-
    2192 site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 143366 of 152098
    2193 triangles, 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_O SES surface,
    2194 6q97_A-site.pdb_P SES surface, 18187 of 137720 triangles, 6q97_A-site.pdb_Q
    2195 SES surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface,
    2196 6q97_A-site.pdb_T SES surface, 6q97_A-site.pdb_U SES surface, 6q97_A-
    2197 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES
    2198 surface, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface, 6q97_A-
    2199 site.pdb_a SES surface, 38933 of 93508 triangles, 6q97_A-site.pdb_b SES
    2200 surface, 6q97_A-site.pdb_c SES surface, 6q97_A-site.pdb_d SES surface, 6q97_A-
    2201 site.pdb_e SES surface, 6q97_A-site.pdb_f SES surface, 33479 of 47780
    2202 triangles, 6q97_A-site.pdb_k SES surface, 20176 of 110942 triangles, 6q97_A-
    2203 site.pdb_p SES surface, 24581 of 123830 triangles 
    2204 Drag select of 6q97_A-site.pdb_1 SES surface, 4105436 of 7969538 triangles,
    2205 6q97_A-site.pdb_3 SES surface, 248904 of 350468 triangles, 6q97_A-site.pdb_6
    2206 SES surface, 29411 of 33600 triangles, 6q97_A-site.pdb_C SES surface, 225505
    2207 of 231886 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_E SES
    2208 surface, 8839 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 188089 of
    2209 189188 triangles, 6q97_A-site.pdb_H SES surface, 6q97_A-site.pdb_I SES
    2210 surface, 121026 of 172054 triangles, 6q97_A-site.pdb_J SES surface, 6q97_A-
    2211 site.pdb_K SES surface, 16325 of 121150 triangles, 6q97_A-site.pdb_L SES
    2212 surface, 187975 of 188938 triangles, 6q97_A-site.pdb_M SES surface, 149731 of
    2213 152098 triangles, 6q97_A-site.pdb_N SES surface, 116275 of 127082 triangles,
    2214 6q97_A-site.pdb_O SES surface, 86799 of 121204 triangles, 6q97_A-site.pdb_P
    2215 SES surface, 47679 of 137720 triangles, 6q97_A-site.pdb_Q SES surface, 6q97_A-
    2216 site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES
    2217 surface, 31867 of 112872 triangles, 6q97_A-site.pdb_U SES surface, 6q97_A-
    2218 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 80160 of 84440
    2219 triangles, 6q97_A-site.pdb_Y SES surface, 50738 of 74596 triangles, 6q97_A-
    2220 site.pdb_Z SES surface, 6q97_A-site.pdb_b SES surface, 6q97_A-site.pdb_c SES
    2221 surface, 3130 of 63158 triangles, 6q97_A-site.pdb_d SES surface, 8817 of 68556
    2222 triangles, 6q97_A-site.pdb_e SES surface, 76713 of 88192 triangles, 6q97_A-
    2223 site.pdb_f SES surface 
    2224 
    2225 > select up
    2226 
    2227 56368 atoms, 4510 residues, 57 models selected 
    2228 
    2229 > select down
    2230 
    2231 Nothing selected 
    2232 Drag select of 6q97_A-site.pdb_1 SES surface, 4471686 of 7969538 triangles,
    2233 6q97_A-site.pdb_3 SES surface, 315111 of 350468 triangles, 6q97_A-site.pdb_6
    2234 SES surface, 33506 of 33600 triangles, 6q97_A-site.pdb_C SES surface, 229148
    2235 of 231886 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_E SES
    2236 surface, 36992 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 6q97_A-
    2237 site.pdb_H SES surface, 6q97_A-site.pdb_I SES surface, 152262 of 172054
    2238 triangles, 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_K SES surface, 33182
    2239 of 121150 triangles, 6q97_A-site.pdb_L SES surface, 6q97_A-site.pdb_M SES
    2240 surface, 6q97_A-site.pdb_N SES surface, 122324 of 127082 triangles, 6q97_A-
    2241 site.pdb_O SES surface, 114932 of 121204 triangles, 6q97_A-site.pdb_P SES
    2242 surface, 58145 of 137720 triangles, 6q97_A-site.pdb_Q SES surface, 6q97_A-
    2243 site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES
    2244 surface, 47704 of 112872 triangles, 6q97_A-site.pdb_U SES surface, 6q97_A-
    2245 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_Y SES
    2246 surface, 61268 of 74596 triangles, 6q97_A-site.pdb_Z SES surface, 6q97_A-
    2247 site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 12611 of 63158
    2248 triangles, 6q97_A-site.pdb_d SES surface, 15707 of 68556 triangles, 6q97_A-
    2249 site.pdb_e SES surface, 85681 of 88192 triangles, 6q97_A-site.pdb_f SES
    2250 surface 
    2251 Drag select of 6q97_A-site.pdb_1 SES surface, 2369943 of 7969538 triangles,
    2252 6q97_A-site.pdb_3 SES surface, 250073 of 350468 triangles, 6q97_A-site.pdb_C
    2253 SES surface, 192958 of 231886 triangles, 6q97_A-site.pdb_D SES surface, 124353
    2254 of 235976 triangles, 6q97_A-site.pdb_E SES surface, 1217 of 190010 triangles,
    2255 6q97_A-site.pdb_F SES surface, 187378 of 189188 triangles, 6q97_A-site.pdb_H
    2256 SES surface, 6q97_A-site.pdb_I SES surface, 153753 of 172054 triangles,
    2257 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_L SES surface, 46907 of 188938
    2258 triangles, 6q97_A-site.pdb_M SES surface, 91747 of 152098 triangles, 6q97_A-
    2259 site.pdb_N SES surface, 30844 of 127082 triangles, 6q97_A-site.pdb_O SES
    2260 surface, 43460 of 121204 triangles, 6q97_A-site.pdb_P SES surface, 20004 of
    2261 137720 triangles, 6q97_A-site.pdb_Q SES surface, 140704 of 143740 triangles,
    2262 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface, 91480 of 122990
    2263 triangles, 6q97_A-site.pdb_U SES surface, 54637 of 116360 triangles, 6q97_A-
    2264 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 41670 of 84440
    2265 triangles, 6q97_A-site.pdb_Z SES surface, 6q97_A-site.pdb_b SES surface, 72796
    2266 of 76920 triangles, 6q97_A-site.pdb_e SES surface, 874 of 88192 triangles,
    2267 6q97_A-site.pdb_f SES surface 
    2268 
    2269 > color sel dark gray
    2270 
    2271 > select clear
    2272 
    2273 > select #2/a:45@O
    2274 
    2275 1 atom, 1 residue, 1 model selected 
    2276 
    2277 > select up
    2278 
    2279 7 atoms, 6 bonds, 1 residue, 2 models selected 
    2280 
    2281 > select up
    2282 
    2283 216 atoms, 220 bonds, 29 residues, 2 models selected 
    2284 
    2285 > select up
    2286 
    2287 523 atoms, 531 bonds, 67 residues, 2 models selected 
    2288 
    2289 > color sel dark gray
    2290 
    2291 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2292 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2293 
    2294 > select clear
    2295 
    2296 > select clear
    2297 
    2298 > select #2/B:115@CB
    2299 
    2300 1 atom, 1 residue, 1 model selected 
    2301 
    2302 > set bgColor black
    2303 
    2304 > select up
    2305 
    2306 16 atoms, 14 bonds, 2 residues, 3 models selected 
    2307 
    2308 > select up
    2309 
    2310 47 atoms, 45 bonds, 6 residues, 3 models selected 
    2311 
    2312 > select up
    2313 
    2314 3191 atoms, 3239 bonds, 421 residues, 3 models selected 
    2315 
    2316 > color sel dark gray
    2317 
    2318 > lighting soft
    2319 
    2320 > lighting simple
    2321 
    2322 > lighting full
    2323 
    2324 > lighting soft
    2325 
    2326 > select clear
    2327 
    2328 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2329 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2330 
    2331 > open C:/Users/claud/Downloads/6q97-pdb-bundle.tar/6q97_A-site.pdb
    2332 
    2333 Summary of feedback from opening C:/Users/claud/Downloads/6q97-pdb-
    2334 bundle.tar/6q97_A-site.pdb 
    2335 --- 
    2336 warning | Ignored bad PDB record found on line 157976 
    2337 END 
    2338  
    2339 Chain information for 6q97_A-site.pdb #7 
    2340 --- 
    2341 Chain | Description 
    2342 1 | No description available 
    2343 2 | No description available 
    2344 3 | No description available 
    2345 4 | No description available 
    2346 5 | No description available 
    2347 6 | No description available 
    2348 7 | No description available 
    2349 8 | No description available 
    2350 9 | No description available 
    2351 B | No description available 
    2352 C | No description available 
    2353 D | No description available 
    2354 E | No description available 
    2355 F | No description available 
    2356 G | No description available 
    2357 H | No description available 
    2358 I | No description available 
    2359 J | No description available 
    2360 K | No description available 
    2361 L | No description available 
    2362 M | No description available 
    2363 N | No description available 
    2364 O | No description available 
    2365 P | No description available 
    2366 Q | No description available 
    2367 R | No description available 
    2368 S | No description available 
    2369 T | No description available 
    2370 U | No description available 
    2371 V | No description available 
    2372 W | No description available 
    2373 X | No description available 
    2374 Y | No description available 
    2375 Z | No description available 
    2376 a | No description available 
    2377 b | No description available 
    2378 c | No description available 
    2379 d | No description available 
    2380 e | No description available 
    2381 f | No description available 
    2382 g | No description available 
    2383 h | No description available 
    2384 i | No description available 
    2385 j | No description available 
    2386 k | No description available 
    2387 l | No description available 
    2388 m | No description available 
    2389 n | No description available 
    2390 o | No description available 
    2391 p | No description available 
    2392 q | No description available 
    2393 r | No description available 
    2394 s | No description available 
    2395 t | No description available 
    2396 u | No description available 
    2397 v | No description available 
    2398 w | No description available 
    2399 x | No description available 
    2400 y | No description available 
    2401 z | No description available 
    2402  
    2403 
    2404 > select #7/4:304@C1'
    2405 
    2406 1 atom, 1 residue, 1 model selected 
    2407 
    2408 > hide #!2 models
    2409 
    2410 > show #!2 models
    2411 
    2412 > select clear
    2413 
    2414 > hide #!2 models
    2415 
    2416 > select up
    2417 
    2418 77 atoms, 81 bonds, 4 residues, 1 model selected 
    2419 
    2420 > select up
    2421 
    2422 10771 atoms, 12004 bonds, 535 residues, 1 model selected 
    2423 
    2424 > select up
    2425 
    2426 10782 atoms, 12014 bonds, 536 residues, 1 model selected 
    2427 
    2428 > select up
    2429 
    2430 10908 atoms, 12145 bonds, 552 residues, 1 model selected 
    2431 
    2432 > select clear
    2433 
    2434 > show #!7 cartoons
    2435 
    2436 > hide #!7 surfaces
    2437 
    2438 > hide #!7 atoms
    2439 
    2440 > select up
    2441 
    2442 10595 atoms, 11836 bonds, 500 residues, 1 model selected 
    2443 
    2444 > select up
    2445 
    2446 11719 atoms, 12977 bonds, 644 residues, 1 model selected 
    2447 
    2448 > select ~sel
    2449 
    2450 910679 atoms, 987061 bonds, 12 pseudobonds, 67866 residues, 10 models selected 
    2451 
    2452 > delete atoms (#!7 & sel)
    2453 
    2454 > delete bonds (#!7 & sel)
    2455 
    2456 > select #7/9:7
    2457 
    2458 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2459 
    2460 > select up
    2461 
    2462 128 atoms, 142 bonds, 6 residues, 1 model selected 
    2463 
    2464 > ui tool show "Color Actions"
    2465 
    2466 > color sel deep sky blue
    2467 
    2468 > select clear
    2469 
    2470 > select #7/7:29
    2471 
    2472 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2473 
    2474 > select up
    2475 
    2476 1644 atoms, 1836 bonds, 77 residues, 1 model selected 
    2477 
    2478 > color sel forest green
    2479 
    2480 > select #7/4:319
    2481 
    2482 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2483 
    2484 > select up
    2485 
    2486 7134 atoms, 7978 bonds, 334 residues, 1 model selected 
    2487 
    2488 > color sel cornflower blue
    2489 
    2490 > color sel royal blue
    2491 
    2492 > select clear
    2493 
    2494 > select #7/5:104
    2495 
    2496 7 atoms, 6 bonds, 1 residue, 1 model selected 
    2497 
    2498 > select up
    2499 
    2500 34 atoms, 34 bonds, 4 residues, 1 model selected 
    2501 
    2502 > select up
    2503 
    2504 1170 atoms, 1191 bonds, 145 residues, 1 model selected 
    2505 
    2506 > color sel medium purple
    2507 
    2508 > select clear
    2509 
    2510 > show #!6 models
    2511 
    2512 > show #!1 models
    2513 
    2514 > hide #!1 models
    2515 
    2516 > hide #!6 models
    2517 
    2518 > select clear
    2519 
    2520 > select #7/8:53
    2521 
    2522 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2523 
    2524 > select up
    2525 
    2526 1638 atoms, 1830 bonds, 77 residues, 1 model selected 
    2527 
    2528 > select up
    2529 
    2530 1640 atoms, 1830 bonds, 79 residues, 1 model selected 
    2531 
    2532 > color sel light pink
    2533 
    2534 > color sel light coral
    2535 
    2536 > color sel indian red
    2537 
    2538 > color sel orange red
    2539 
    2540 > color sel indian red
    2541 
    2542 > select clear
    2543 
    2544 > hide #!7 models
    2545 
    2546 > show #!6 models
    2547 
    2548 > select #6/h:143@CD
    2549 
    2550 1 atom, 1 residue, 1 model selected 
    2551 
    2552 > select up
    2553 
    2554 9 atoms, 8 bonds, 1 residue, 2 models selected 
    2555 
    2556 > select up
    2557 
    2558 92 atoms, 91 bonds, 11 residues, 2 models selected 
    2559 
    2560 > select up
    2561 
    2562 1184 atoms, 1203 bonds, 144 residues, 2 models selected 
    2563 
    2564 > color sel medium purple
    2565 
    2566 > select #6/6:23@OP2
    2567 
    2568 1 atom, 1 residue, 1 model selected 
    2569 
    2570 > select up
    2571 
    2572 23 atoms, 25 bonds, 1 residue, 2 models selected 
    2573 
    2574 > select up
    2575 
    2576 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    2577 
    2578 > color sel royal blue
    2579 
    2580 > select #6/7:399@CG2
    2581 
    2582 1 atom, 1 residue, 1 model selected 
    2583 
    2584 > select up
    2585 
    2586 7 atoms, 6 bonds, 1 residue, 2 models selected 
    2587 
    2588 > select up
    2589 
    2590 76 atoms, 75 bonds, 11 residues, 2 models selected 
    2591 
    2592 > select up
    2593 
    2594 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    2595 
    2596 > color sel light sky blue
    2597 
    2598 > color sel light steel blue
    2599 
    2600 > color sel sky blue
    2601 
    2602 > color sel aquamarine
    2603 
    2604 > color sel medium turquoise
    2605 
    2606 > color sel turquoise
    2607 
    2608 > color sel light sea green
    2609 
    2610 > color sel medium turquoise
    2611 
    2612 > select #6/5:14@N1
    2613 
    2614 1 atom, 1 residue, 1 model selected 
    2615 
    2616 > select up
    2617 
    2618 19 atoms, 21 bonds, 1 residue, 2 models selected 
    2619 
    2620 > select up
    2621 
    2622 104 atoms, 116 bonds, 5 residues, 2 models selected 
    2623 
    2624 > color sel deep sky blue
    2625 
    2626 > select #6/3:30@N3
    2627 
    2628 1 atom, 1 residue, 1 model selected 
    2629 
    2630 > select up
    2631 
    2632 23 atoms, 25 bonds, 1 residue, 2 models selected 
    2633 
    2634 > select up
    2635 
    2636 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    2637 
    2638 > color sel forest green
    2639 
    2640 > select #6/4:45@C1'
    2641 
    2642 1 atom, 1 residue, 1 model selected 
    2643 
    2644 > select up
    2645 
    2646 22 atoms, 24 bonds, 1 residue, 2 models selected 
    2647 
    2648 > select up
    2649 
    2650 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    2651 
    2652 > color sel indian red
    2653 
    2654 > select clear
    2655 
    2656 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2657 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2658 
    2659 > show #!7 models
    2660 
    2661 > hide #!6 models
    2662 
    2663 > select #7
    2664 
    2665 11719 atoms, 12977 bonds, 2 pseudobonds, 644 residues, 2 models selected 
    2666 
    2667 > show sel surfaces
    2668 
    2669 > hide sel cartoons
    2670 
    2671 > show sel cartoons
    2672 
    2673 > select clear
    2674 
    2675 > select #7/4:226@N1
    2676 
    2677 1 atom, 1 residue, 1 model selected 
    2678 
    2679 > select up
    2680 
    2681 23 atoms, 25 bonds, 1 residue, 2 models selected 
    2682 
    2683 > select up
    2684 
    2685 7134 atoms, 7978 bonds, 334 residues, 2 models selected 
    2686 
    2687 > color sel royal blue
    2688 
    2689 > select #7/5:28@OE2
    2690 
    2691 1 atom, 1 residue, 1 model selected 
    2692 
    2693 > select up
    2694 
    2695 9 atoms, 8 bonds, 1 residue, 2 models selected 
    2696 
    2697 > select up
    2698 
    2699 35 atoms, 34 bonds, 4 residues, 2 models selected 
    2700 
    2701 > select up
    2702 
    2703 1170 atoms, 1191 bonds, 145 residues, 2 models selected 
    2704 
    2705 > color sel medium purple
    2706 
    2707 > select #7/7:26@N4
    2708 
    2709 1 atom, 1 residue, 1 model selected 
    2710 
    2711 > select up
    2712 
    2713 20 atoms, 21 bonds, 1 residue, 2 models selected 
    2714 
    2715 > select up
    2716 
    2717 1644 atoms, 1836 bonds, 77 residues, 2 models selected 
    2718 
    2719 > color sel forest green
    2720 
    2721 > select #7/8:26@N4
    2722 
    2723 1 atom, 1 residue, 1 model selected 
    2724 
    2725 > select up
    2726 
    2727 20 atoms, 21 bonds, 1 residue, 2 models selected 
    2728 
    2729 > select up
    2730 
    2731 1638 atoms, 1830 bonds, 77 residues, 2 models selected 
    2732 
    2733 > color sel indian red
    2734 
    2735 > select #7/9:2@N3
    2736 
    2737 1 atom, 1 residue, 1 model selected 
    2738 
    2739 > select up
    2740 
    2741 20 atoms, 21 bonds, 1 residue, 2 models selected 
    2742 
    2743 > select up
    2744 
    2745 128 atoms, 142 bonds, 6 residues, 2 models selected 
    2746 
    2747 > color sel deep sky blue
    2748 
    2749 > select clear
    2750 
    2751 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2752 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2753 
    2754 > hide #!7 models
    2755 
    2756 > show #!1 models
    2757 
    2758 > view
    2759 
    2760 Drag select of 4v8q_withEF-Tu.pdb_A SES surface, 75024 of 98156 triangles,
    2761 4v8q_withEF-Tu.pdb_B SES surface, 99174 of 112796 triangles, 4v8q_withEF-
    2762 Tu.pdb_C SES surface, 4v8q_withEF-Tu.pdb_D SES surface, 4v8q_withEF-Tu.pdb_F
    2763 SES surface, 4v8q_withEF-Tu.pdb_G SES surface, 18206 of 65362 triangles,
    2764 4v8q_withEF-Tu.pdb_H SES surface, 4v8q_withEF-Tu.pdb_I SES surface, 82175 of
    2765 85306 triangles, 4v8q_withEF-Tu.pdb_J SES surface, 5667 of 45694 triangles,
    2766 4v8q_withEF-Tu.pdb_K SES surface, 4712391 of 7461216 triangles, 4v8q_withEF-
    2767 Tu.pdb_L SES surface, 154948 of 328776 triangles, 4v8q_withEF-Tu.pdb_N SES
    2768 surface, 4631 of 291894 triangles, 4v8q_withEF-Tu.pdb_O SES surface, 190800 of
    2769 213010 triangles, 4v8q_withEF-Tu.pdb_P SES surface, 216512 of 225352
    2770 triangles, 4v8q_withEF-Tu.pdb_R SES surface, 96603 of 178924 triangles,
    2771 4v8q_withEF-Tu.pdb_U SES surface, 4v8q_withEF-Tu.pdb_W SES surface,
    2772 4v8q_withEF-Tu.pdb_X SES surface, 14445 of 153360 triangles, 4v8q_withEF-
    2773 Tu.pdb_Y SES surface, 4v8q_withEF-Tu.pdb_Z SES surface, 63310 of 113566
    2774 triangles, 4v8q_withEF-Tu.pdb_a SES surface, 21967 of 170520 triangles,
    2775 4v8q_withEF-Tu.pdb_b SES surface, 4v8q_withEF-Tu.pdb_c SES surface,
    2776 4v8q_withEF-Tu.pdb_d SES surface, 4v8q_withEF-Tu.pdb_e SES surface,
    2777 4v8q_withEF-Tu.pdb_f SES surface, 119345 of 123866 triangles, 4v8q_withEF-
    2778 Tu.pdb_g SES surface, 70364 of 207322 triangles, 4039 residues 
    2779 Drag select of 4v8q_withEF-Tu.pdb_A SES surface, 4v8q_withEF-Tu.pdb_B SES
    2780 surface, 4v8q_withEF-Tu.pdb_C SES surface, 4v8q_withEF-Tu.pdb_D SES surface,
    2781 4v8q_withEF-Tu.pdb_E SES surface, 5835 of 62142 triangles, 4v8q_withEF-
    2782 Tu.pdb_F SES surface, 4v8q_withEF-Tu.pdb_G SES surface, 4v8q_withEF-Tu.pdb_H
    2783 SES surface, 4v8q_withEF-Tu.pdb_I SES surface, 4v8q_withEF-Tu.pdb_J SES
    2784 surface, 4v8q_withEF-Tu.pdb_K SES surface, 6306290 of 7461216 triangles,
    2785 4v8q_withEF-Tu.pdb_L SES surface, 4v8q_withEF-Tu.pdb_M SES surface, 111794 of
    2786 218474 triangles, 4v8q_withEF-Tu.pdb_N SES surface, 107530 of 291894
    2787 triangles, 4v8q_withEF-Tu.pdb_O SES surface, 4v8q_withEF-Tu.pdb_P SES surface,
    2788 4v8q_withEF-Tu.pdb_Q SES surface, 85475 of 201808 triangles, 4v8q_withEF-
    2789 Tu.pdb_R SES surface, 4v8q_withEF-Tu.pdb_S SES surface, 123951 of 125096
    2790 triangles, 4v8q_withEF-Tu.pdb_T SES surface, 6801 of 138540 triangles,
    2791 4v8q_withEF-Tu.pdb_U SES surface, 4v8q_withEF-Tu.pdb_V SES surface, 46678 of
    2792 110370 triangles, 4v8q_withEF-Tu.pdb_W SES surface, 4v8q_withEF-Tu.pdb_X SES
    2793 surface, 152959 of 153360 triangles, 4v8q_withEF-Tu.pdb_Y SES surface,
    2794 4v8q_withEF-Tu.pdb_Z SES surface, 4v8q_withEF-Tu.pdb_a SES surface, 110754 of
    2795 170520 triangles, 4v8q_withEF-Tu.pdb_b SES surface, 4v8q_withEF-Tu.pdb_c SES
    2796 surface, 4v8q_withEF-Tu.pdb_d SES surface, 4v8q_withEF-Tu.pdb_e SES surface,
    2797 4v8q_withEF-Tu.pdb_f SES surface, 4v8q_withEF-Tu.pdb_g SES surface, 199200 of
    2798 207322 triangles, 4v8q_withEF-Tu.pdb_i SES surface, 1577 of 3905368 triangles,
    2799 5768 residues 
    2800 
    2801 > select up
    2802 
    2803 91025 atoms, 99252 bonds, 6368 residues, 34 models selected 
    2804 
    2805 > show #!2 models
    2806 
    2807 > hide #!2 models
    2808 
    2809 > select up
    2810 
    2811 93828 atoms, 102106 bonds, 6773 residues, 34 models selected 
    2812 
    2813 > color sel dark gray
    2814 
    2815 > select clear
    2816 
    2817 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    2818 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    2819 
    2820 > show #!3 models
    2821 
    2822 > hide #!1 models
    2823 
    2824 > select #3/V:260
    2825 
    2826 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2827 
    2828 > select up
    2829 
    2830 8875 atoms, 9910 bonds, 424 residues, 1 model selected 
    2831 
    2832 > select up
    2833 
    2834 14983 atoms, 16135 bonds, 1200 residues, 1 model selected 
    2835 
    2836 > select up
    2837 
    2838 47978 atoms, 53079 bonds, 2738 residues, 1 model selected 
    2839 
    2840 > select down
    2841 
    2842 15006 atoms, 16135 bonds, 1201 residues, 1 model selected 
    2843 
    2844 > delete atoms sel
    2845 
    2846 > delete bonds sel
    2847 
    2848 > hide #!3 cartoons
    2849 
    2850 > show #!3 surfaces
    2851 
    2852 > hide #!3 atoms
    2853 
    2854 Drag select of 4v6t_withEF-G.pdb_A SES surface, 434 of 3958492 triangles,
    2855 4v6t_withEF-G.pdb_f SES surface, 6458052 of 7355268 triangles,
    2856 4v6t_withEF-G.pdb_g SES surface, 172107 of 275862 triangles,
    2857 4v6t_withEF-G.pdb_h SES surface, 4v6t_withEF-G.pdb_i SES surface,
    2858 4v6t_withEF-G.pdb_j SES surface, 109174 of 167524 triangles,
    2859 4v6t_withEF-G.pdb_k SES surface, 152564 of 168342 triangles,
    2860 4v6t_withEF-G.pdb_l SES surface, 153822 of 154734 triangles,
    2861 4v6t_withEF-G.pdb_n SES surface, 4v6t_withEF-G.pdb_o SES surface, 43086 of
    2862 112616 triangles, 4v6t_withEF-G.pdb_p SES surface, 4v6t_withEF-G.pdb_q SES
    2863 surface, 142485 of 143310 triangles, 4v6t_withEF-G.pdb_r SES surface,
    2864 4v6t_withEF-G.pdb_s SES surface, 4v6t_withEF-G.pdb_t SES surface, 70477 of
    2865 127746 triangles, 4v6t_withEF-G.pdb_u SES surface, 4v6t_withEF-G.pdb_v SES
    2866 surface, 4v6t_withEF-G.pdb_w SES surface, 4v6t_withEF-G.pdb_x SES surface,
    2867 4v6t_withEF-G.pdb_y SES surface, 4v6t_withEF-G.pdb_z SES surface,
    2868 4v6t_withEF-G.pdb_0 SES surface, 4v6t_withEF-G.pdb_1 SES surface,
    2869 4v6t_withEF-G.pdb_2 SES surface, 4v6t_withEF-G.pdb_3 SES surface,
    2870 4v6t_withEF-G.pdb_Z SES surface, 4v6t_withEF-G.pdb_a SES surface,
    2871 4v6t_withEF-G.pdb_b SES surface, 4v6t_withEF-G.pdb_c SES surface,
    2872 4v6t_withEF-G.pdb_d SES surface, 4v6t_withEF-G.pdb_e SES surface 
    2873 Drag select of 4v6t_withEF-G.pdb_A SES surface, 28955 of 3958492 triangles,
    2874 4v6t_withEF-G.pdb_F SES surface, 429 of 104002 triangles, 4v6t_withEF-G.pdb_K
    2875 SES surface, 5463 of 114982 triangles, 4v6t_withEF-G.pdb_f SES surface,
    2876 6600429 of 7355268 triangles, 4v6t_withEF-G.pdb_g SES surface, 263319 of
    2877 275862 triangles, 4v6t_withEF-G.pdb_h SES surface, 202893 of 207708 triangles,
    2878 4v6t_withEF-G.pdb_i SES surface, 4v6t_withEF-G.pdb_j SES surface, 93324 of
    2879 167524 triangles, 4v6t_withEF-G.pdb_k SES surface, 95654 of 168342 triangles,
    2880 4v6t_withEF-G.pdb_l SES surface, 4v6t_withEF-G.pdb_n SES surface,
    2881 4v6t_withEF-G.pdb_o SES surface, 22595 of 112616 triangles,
    2882 4v6t_withEF-G.pdb_p SES surface, 4v6t_withEF-G.pdb_q SES surface, 129916 of
    2883 143310 triangles, 4v6t_withEF-G.pdb_r SES surface, 4v6t_withEF-G.pdb_s SES
    2884 surface, 4v6t_withEF-G.pdb_t SES surface, 50210 of 127746 triangles,
    2885 4v6t_withEF-G.pdb_u SES surface, 4v6t_withEF-G.pdb_v SES surface,
    2886 4v6t_withEF-G.pdb_w SES surface, 4v6t_withEF-G.pdb_x SES surface,
    2887 4v6t_withEF-G.pdb_y SES surface, 4v6t_withEF-G.pdb_z SES surface,
    2888 4v6t_withEF-G.pdb_0 SES surface, 4v6t_withEF-G.pdb_1 SES surface,
    2889 4v6t_withEF-G.pdb_2 SES surface, 4v6t_withEF-G.pdb_3 SES surface,
    2890 4v6t_withEF-G.pdb_Z SES surface, 4v6t_withEF-G.pdb_a SES surface,
    2891 4v6t_withEF-G.pdb_b SES surface, 4v6t_withEF-G.pdb_c SES surface,
    2892 4v6t_withEF-G.pdb_d SES surface, 33585 of 44032 triangles, 4v6t_withEF-G.pdb_e
    2893 SES surface 
    2894 
    2895 > select clear
    2896 
    2897 Drag select of 4v6t_withEF-G.pdb_f SES surface, 4540039 of 7355268 triangles,
    2898 4v6t_withEF-G.pdb_g SES surface, 16322 of 275862 triangles,
    2899 4v6t_withEF-G.pdb_h SES surface, 100870 of 207708 triangles,
    2900 4v6t_withEF-G.pdb_i SES surface, 4v6t_withEF-G.pdb_k SES surface, 11424 of
    2901 168342 triangles, 4v6t_withEF-G.pdb_l SES surface, 153522 of 154734 triangles,
    2902 4v6t_withEF-G.pdb_n SES surface, 135235 of 138936 triangles,
    2903 4v6t_withEF-G.pdb_p SES surface, 4v6t_withEF-G.pdb_q SES surface, 11003 of
    2904 143310 triangles, 4v6t_withEF-G.pdb_r SES surface, 99688 of 117632 triangles,
    2905 4v6t_withEF-G.pdb_s SES surface, 98362 of 110164 triangles,
    2906 4v6t_withEF-G.pdb_u SES surface, 4v6t_withEF-G.pdb_v SES surface,
    2907 4v6t_withEF-G.pdb_w SES surface, 4v6t_withEF-G.pdb_x SES surface,
    2908 4v6t_withEF-G.pdb_y SES surface, 4v6t_withEF-G.pdb_z SES surface, 54991 of
    2909 92118 triangles, 4v6t_withEF-G.pdb_0 SES surface, 75444 of 81516 triangles,
    2910 4v6t_withEF-G.pdb_1 SES surface, 4v6t_withEF-G.pdb_2 SES surface,
    2911 4v6t_withEF-G.pdb_3 SES surface, 4v6t_withEF-G.pdb_Z SES surface,
    2912 4v6t_withEF-G.pdb_a SES surface, 43019 of 56210 triangles, 4v6t_withEF-G.pdb_b
    2913 SES surface, 4v6t_withEF-G.pdb_c SES surface, 4v6t_withEF-G.pdb_e SES surface,
    2914 185752 of 326338 triangles 
    2915 
    2916 > select clear
    2917 
    2918 Drag select of 4v6t_withEF-G.pdb_A SES surface, 1774 of 3958492 triangles,
    2919 4v6t_withEF-G.pdb_f SES surface, 6238400 of 7355268 triangles,
    2920 4v6t_withEF-G.pdb_g SES surface, 190662 of 275862 triangles,
    2921 4v6t_withEF-G.pdb_h SES surface, 201467 of 207708 triangles,
    2922 4v6t_withEF-G.pdb_i SES surface, 4v6t_withEF-G.pdb_j SES surface, 63200 of
    2923 167524 triangles, 4v6t_withEF-G.pdb_k SES surface, 98609 of 168342 triangles,
    2924 4v6t_withEF-G.pdb_l SES surface, 4v6t_withEF-G.pdb_n SES surface,
    2925 4v6t_withEF-G.pdb_o SES surface, 11338 of 112616 triangles,
    2926 4v6t_withEF-G.pdb_p SES surface, 4v6t_withEF-G.pdb_q SES surface, 124448 of
    2927 143310 triangles, 4v6t_withEF-G.pdb_r SES surface, 4v6t_withEF-G.pdb_s SES
    2928 surface, 4v6t_withEF-G.pdb_t SES surface, 36676 of 127746 triangles,
    2929 4v6t_withEF-G.pdb_u SES surface, 4v6t_withEF-G.pdb_v SES surface,
    2930 4v6t_withEF-G.pdb_w SES surface, 4v6t_withEF-G.pdb_x SES surface,
    2931 4v6t_withEF-G.pdb_y SES surface, 4v6t_withEF-G.pdb_z SES surface,
    2932 4v6t_withEF-G.pdb_0 SES surface, 4v6t_withEF-G.pdb_1 SES surface,
    2933 4v6t_withEF-G.pdb_2 SES surface, 4v6t_withEF-G.pdb_3 SES surface,
    2934 4v6t_withEF-G.pdb_Z SES surface, 4v6t_withEF-G.pdb_a SES surface,
    2935 4v6t_withEF-G.pdb_b SES surface, 4v6t_withEF-G.pdb_c SES surface,
    2936 4v6t_withEF-G.pdb_d SES surface, 32956 of 44032 triangles, 4v6t_withEF-G.pdb_e
    2937 SES surface 
    2938 Drag select of 4v6t_withEF-G.pdb_f SES surface, 4687153 of 7355268 triangles,
    2939 4v6t_withEF-G.pdb_g SES surface, 14909 of 275862 triangles,
    2940 4v6t_withEF-G.pdb_h SES surface, 138492 of 207708 triangles,
    2941 4v6t_withEF-G.pdb_i SES surface, 4v6t_withEF-G.pdb_k SES surface, 37095 of
    2942 168342 triangles, 4v6t_withEF-G.pdb_l SES surface, 132714 of 154734 triangles,
    2943 4v6t_withEF-G.pdb_n SES surface, 4v6t_withEF-G.pdb_p SES surface,
    2944 4v6t_withEF-G.pdb_q SES surface, 29291 of 143310 triangles,
    2945 4v6t_withEF-G.pdb_r SES surface, 111572 of 117632 triangles,
    2946 4v6t_withEF-G.pdb_s SES surface, 100729 of 110164 triangles,
    2947 4v6t_withEF-G.pdb_t SES surface, 1404 of 127746 triangles, 4v6t_withEF-G.pdb_u
    2948 SES surface, 4v6t_withEF-G.pdb_v SES surface, 4v6t_withEF-G.pdb_w SES surface,
    2949 4v6t_withEF-G.pdb_x SES surface, 4v6t_withEF-G.pdb_y SES surface,
    2950 4v6t_withEF-G.pdb_z SES surface, 77716 of 92118 triangles, 4v6t_withEF-G.pdb_0
    2951 SES surface, 77245 of 81516 triangles, 4v6t_withEF-G.pdb_1 SES surface,
    2952 4v6t_withEF-G.pdb_2 SES surface, 4v6t_withEF-G.pdb_3 SES surface,
    2953 4v6t_withEF-G.pdb_Z SES surface, 4v6t_withEF-G.pdb_a SES surface, 44493 of
    2954 56210 triangles, 4v6t_withEF-G.pdb_b SES surface, 4v6t_withEF-G.pdb_c SES
    2955 surface, 4v6t_withEF-G.pdb_d SES surface, 975 of 44032 triangles,
    2956 4v6t_withEF-G.pdb_e SES surface, 210159 of 326338 triangles 
    2957 Drag select of 4v6t_withEF-G.pdb_f SES surface, 4954088 of 7355268 triangles,
    2958 4v6t_withEF-G.pdb_g SES surface, 28204 of 275862 triangles,
    2959 4v6t_withEF-G.pdb_h SES surface, 153752 of 207708 triangles,
    2960 4v6t_withEF-G.pdb_i SES surface, 4v6t_withEF-G.pdb_k SES surface, 45647 of
    2961 168342 triangles, 4v6t_withEF-G.pdb_l SES surface, 143714 of 154734 triangles,
    2962 4v6t_withEF-G.pdb_n SES surface, 4v6t_withEF-G.pdb_p SES surface,
    2963 4v6t_withEF-G.pdb_q SES surface, 46049 of 143310 triangles,
    2964 4v6t_withEF-G.pdb_r SES surface, 115543 of 117632 triangles,
    2965 4v6t_withEF-G.pdb_s SES surface, 106390 of 110164 triangles,
    2966 4v6t_withEF-G.pdb_t SES surface, 3812 of 127746 triangles, 4v6t_withEF-G.pdb_u
    2967 SES surface, 4v6t_withEF-G.pdb_v SES surface, 4v6t_withEF-G.pdb_w SES surface,
    2968 4v6t_withEF-G.pdb_x SES surface, 4v6t_withEF-G.pdb_y SES surface,
    2969 4v6t_withEF-G.pdb_z SES surface, 85356 of 92118 triangles, 4v6t_withEF-G.pdb_0
    2970 SES surface, 79369 of 81516 triangles, 4v6t_withEF-G.pdb_1 SES surface,
    2971 4v6t_withEF-G.pdb_2 SES surface, 4v6t_withEF-G.pdb_3 SES surface,
    2972 4v6t_withEF-G.pdb_Z SES surface, 4v6t_withEF-G.pdb_a SES surface, 49783 of
    2973 56210 triangles, 4v6t_withEF-G.pdb_b SES surface, 4v6t_withEF-G.pdb_c SES
    2974 surface, 4v6t_withEF-G.pdb_d SES surface, 3557 of 44032 triangles,
    2975 4v6t_withEF-G.pdb_e SES surface, 237478 of 326338 triangles 
    2976 
    2977 > select up
    2978 
    2979 291 atoms, 276 bonds, 28 residues, 24 models selected 
    2980 
    2981 > select up
    2982 
    2983 66983 atoms, 74765 bonds, 3304 residues, 24 models selected 
    2984 
    2985 > select up
    2986 
    2987 85157 atoms, 93206 bonds, 5638 residues, 24 models selected 
    2988 
    2989 > select up
    2990 
    2991 85168 atoms, 93217 bonds, 5639 residues, 25 models selected 
    2992 
    2993 > select up
    2994 
    2995 85194 atoms, 93243 bonds, 5643 residues, 25 models selected 
    2996 
    2997 > select up
    2998 
    2999 86231 atoms, 94299 bonds, 5774 residues, 25 models selected 
    3000 
    3001 > select up
    3002 
    3003 86240 atoms, 94307 bonds, 5775 residues, 26 models selected 
    3004 
    3005 > select up
    3006 
    3007 86335 atoms, 94402 bonds, 5787 residues, 26 models selected 
    3008 
    3009 > select up
    3010 
    3011 86533 atoms, 94602 bonds, 5812 residues, 26 models selected 
    3012 
    3013 > select up
    3014 
    3015 86559 atoms, 94625 bonds, 5815 residues, 29 models selected 
    3016 
    3017 > select up
    3018 
    3019 86871 atoms, 94943 bonds, 5854 residues, 29 models selected 
    3020 
    3021 > select up
    3022 
    3023 89481 atoms, 97586 bonds, 6199 residues, 29 models selected 
    3024 
    3025 > select up
    3026 
    3027 89489 atoms, 97593 bonds, 6200 residues, 30 models selected 
    3028 
    3029 > select up
    3030 
    3031 89557 atoms, 97661 bonds, 6209 residues, 30 models selected 
    3032 
    3033 > select up
    3034 
    3035 90106 atoms, 98221 bonds, 6276 residues, 30 models selected 
    3036 
    3037 > select up
    3038 
    3039 90115 atoms, 98229 bonds, 6277 residues, 31 models selected 
    3040 
    3041 > select up
    3042 
    3043 90214 atoms, 98328 bonds, 6289 residues, 31 models selected 
    3044 
    3045 > select up
    3046 
    3047 90219 atoms, 98332 bonds, 6290 residues, 31 models selected 
    3048 
    3049 > select up
    3050 
    3051 90234 atoms, 98347 bonds, 6292 residues, 32 models selected 
    3052 
    3053 > select up
    3054 
    3055 90425 atoms, 98541 bonds, 6316 residues, 32 models selected 
    3056 
    3057 > select up
    3058 
    3059 90987 atoms, 99114 bonds, 6386 residues, 32 models selected 
    3060 
    3061 > color sel dark gray
    3062 
    3063 > select ~sel
    3064 
    3065 671538 atoms, 727966 bonds, 10 pseudobonds, 49950 residues, 11 models selected 
    3066 
    3067 > color sel lemon chiffon
    3068 
    3069 > select clear
    3070 
    3071 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    3072 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    3073 
    3074 > show #!1 models
    3075 
    3076 > hide #!3 models
    3077 
    3078 Drag select of 4v8q_withEF-Tu.pdb_A SES surface, 4v8q_withEF-Tu.pdb_B SES
    3079 surface, 4v8q_withEF-Tu.pdb_C SES surface, 4v8q_withEF-Tu.pdb_D SES surface,
    3080 4v8q_withEF-Tu.pdb_E SES surface, 21783 of 62142 triangles, 4v8q_withEF-
    3081 Tu.pdb_F SES surface, 4v8q_withEF-Tu.pdb_G SES surface, 4v8q_withEF-Tu.pdb_H
    3082 SES surface, 4v8q_withEF-Tu.pdb_I SES surface, 4v8q_withEF-Tu.pdb_J SES
    3083 surface, 4v8q_withEF-Tu.pdb_K SES surface, 6866036 of 7461216 triangles,
    3084 4v8q_withEF-Tu.pdb_L SES surface, 4v8q_withEF-Tu.pdb_M SES surface, 218194 of
    3085 218474 triangles, 4v8q_withEF-Tu.pdb_N SES surface, 274390 of 291894
    3086 triangles, 4v8q_withEF-Tu.pdb_O SES surface, 4v8q_withEF-Tu.pdb_P SES surface,
    3087 4v8q_withEF-Tu.pdb_Q SES surface, 151824 of 201808 triangles, 4v8q_withEF-
    3088 Tu.pdb_R SES surface, 156214 of 178924 triangles, 4v8q_withEF-Tu.pdb_S SES
    3089 surface, 57783 of 125096 triangles, 4v8q_withEF-Tu.pdb_U SES surface,
    3090 4v8q_withEF-Tu.pdb_V SES surface, 44297 of 110370 triangles, 4v8q_withEF-
    3091 Tu.pdb_W SES surface, 4v8q_withEF-Tu.pdb_X SES surface, 151078 of 153360
    3092 triangles, 4v8q_withEF-Tu.pdb_Y SES surface, 4v8q_withEF-Tu.pdb_Z SES surface,
    3093 4v8q_withEF-Tu.pdb_a SES surface, 91032 of 170520 triangles, 4v8q_withEF-
    3094 Tu.pdb_b SES surface, 4v8q_withEF-Tu.pdb_c SES surface, 4v8q_withEF-Tu.pdb_d
    3095 SES surface, 4v8q_withEF-Tu.pdb_e SES surface, 4v8q_withEF-Tu.pdb_f SES
    3096 surface, 4v8q_withEF-Tu.pdb_g SES surface, 191952 of 207322 triangles,
    3097 4v8q_withEF-Tu.pdb_i SES surface, 30632 of 3905368 triangles, 4v8q_withEF-
    3098 Tu.pdb_n SES surface, 749 of 110024 triangles, 4v8q_withEF-Tu.pdb_s SES
    3099 surface, 3136 of 119518 triangles, 6168 residues 
    3100 
    3101 > select up
    3102 
    3103 124672 atoms, 136796 bonds, 8020 residues, 35 models selected 
    3104 
    3105 > select down
    3106 
    3107 87466 atoms, 6168 residues, 35 models selected 
    3108 
    3109 > select clear
    3110 
    3111 Drag select of 4v8q_withEF-Tu.pdb_A SES surface, 4v8q_withEF-Tu.pdb_B SES
    3112 surface, 4v8q_withEF-Tu.pdb_C SES surface, 4v8q_withEF-Tu.pdb_D SES surface,
    3113 4v8q_withEF-Tu.pdb_F SES surface, 4v8q_withEF-Tu.pdb_G SES surface, 61089 of
    3114 65362 triangles, 4v8q_withEF-Tu.pdb_H SES surface, 4v8q_withEF-Tu.pdb_I SES
    3115 surface, 4v8q_withEF-Tu.pdb_J SES surface, 42098 of 45694 triangles,
    3116 4v8q_withEF-Tu.pdb_K SES surface, 5852456 of 7461216 triangles, 4v8q_withEF-
    3117 Tu.pdb_L SES surface, 301451 of 328776 triangles, 4v8q_withEF-Tu.pdb_M SES
    3118 surface, 39964 of 218474 triangles, 4v8q_withEF-Tu.pdb_N SES surface, 61210 of
    3119 291894 triangles, 4v8q_withEF-Tu.pdb_O SES surface, 212856 of 213010
    3120 triangles, 4v8q_withEF-Tu.pdb_P SES surface, 4v8q_withEF-Tu.pdb_Q SES surface,
    3121 1109 of 201808 triangles, 4v8q_withEF-Tu.pdb_R SES surface, 148857 of 178924
    3122 triangles, 4v8q_withEF-Tu.pdb_S SES surface, 55135 of 125096 triangles,
    3123 4v8q_withEF-Tu.pdb_U SES surface, 4v8q_withEF-Tu.pdb_V SES surface, 20565 of
    3124 110370 triangles, 4v8q_withEF-Tu.pdb_W SES surface, 4v8q_withEF-Tu.pdb_X SES
    3125 surface, 123932 of 153360 triangles, 4v8q_withEF-Tu.pdb_Y SES surface,
    3126 4v8q_withEF-Tu.pdb_Z SES surface, 4v8q_withEF-Tu.pdb_a SES surface, 69103 of
    3127 170520 triangles, 4v8q_withEF-Tu.pdb_b SES surface, 4v8q_withEF-Tu.pdb_c SES
    3128 surface, 4v8q_withEF-Tu.pdb_d SES surface, 4v8q_withEF-Tu.pdb_e SES surface,
    3129 4v8q_withEF-Tu.pdb_f SES surface, 4v8q_withEF-Tu.pdb_g SES surface, 145572 of
    3130 207322 triangles, 4v8q_withEF-Tu.pdb_i SES surface, 79 of 3905368 triangles,
    3131 5095 residues 
    3132 
    3133 > select up
    3134 
    3135 88424 atoms, 96613 bonds, 6012 residues, 31 models selected 
    3136 
    3137 > select up
    3138 
    3139 91312 atoms, 99557 bonds, 6407 residues, 31 models selected 
    3140 
    3141 > select up
    3142 
    3143 91333 atoms, 99576 bonds, 6410 residues, 33 models selected 
    3144 
    3145 > select up
    3146 
    3147 91338 atoms, 99580 bonds, 6411 residues, 33 models selected 
    3148 
    3149 > select up
    3150 
    3151 91581 atoms, 99827 bonds, 6448 residues, 33 models selected 
    3152 
    3153 > select up
    3154 
    3155 93487 atoms, 101756 bonds, 6728 residues, 33 models selected 
    3156 
    3157 > select up
    3158 
    3159 93494 atoms, 101762 bonds, 6729 residues, 34 models selected 
    3160 
    3161 > select up
    3162 
    3163 93536 atoms, 101805 bonds, 6734 residues, 34 models selected 
    3164 
    3165 > select up
    3166 
    3167 93828 atoms, 102106 bonds, 6773 residues, 34 models selected 
    3168 
    3169 > color sel dark gray
    3170 
    3171 > hide #!1 models
    3172 
    3173 > select clear
    3174 
    3175 > show #!6 models
    3176 
    3177 > show #!7 models
    3178 
    3179 > hide #!6 models
    3180 
    3181 > hide #!7 models
    3182 
    3183 > show #!4 models
    3184 
    3185 > select up
    3186 
    3187 7792 atoms, 8715 bonds, 367 residues, 1 model selected 
    3188 
    3189 > select up
    3190 
    3191 8968 atoms, 9912 bonds, 514 residues, 1 model selected 
    3192 
    3193 > delete atoms sel
    3194 
    3195 > delete bonds sel
    3196 
    3197 > show #!4 surfaces
    3198 
    3199 Drag select of 6q98_P-site.pdb_1 SES surface, 6471944 of 7798404 triangles,
    3200 6q98_P-site.pdb_3 SES surface, 6q98_P-site.pdb_6 SES surface, 6q98_P-
    3201 site.pdb_B SES surface, 83609 of 303508 triangles, 6q98_P-site.pdb_C SES
    3202 surface, 6q98_P-site.pdb_D SES surface, 6q98_P-site.pdb_E SES surface, 141042
    3203 of 197708 triangles, 6q98_P-site.pdb_F SES surface, 180827 of 181882
    3204 triangles, 6q98_P-site.pdb_G SES surface, 67350 of 169992 triangles, 6q98_P-
    3205 site.pdb_H SES surface, 6q98_P-site.pdb_I SES surface, 46034 of 167948
    3206 triangles, 6q98_P-site.pdb_J SES surface, 6q98_P-site.pdb_K SES surface, 44931
    3207 of 121566 triangles, 6q98_P-site.pdb_L SES surface, 6q98_P-site.pdb_M SES
    3208 surface, 6q98_P-site.pdb_N SES surface, 6q98_P-site.pdb_O SES surface, 6q98_P-
    3209 site.pdb_P SES surface, 69844 of 134836 triangles, 6q98_P-site.pdb_Q SES
    3210 surface, 6q98_P-site.pdb_R SES surface, 6q98_P-site.pdb_S SES surface, 6q98_P-
    3211 site.pdb_T SES surface, 6q98_P-site.pdb_U SES surface, 6q98_P-site.pdb_V SES
    3212 surface, 6q98_P-site.pdb_W SES surface, 6q98_P-site.pdb_X SES surface, 6q98_P-
    3213 site.pdb_Y SES surface, 6q98_P-site.pdb_Z SES surface, 6q98_P-site.pdb_a SES
    3214 surface, 28558 of 85390 triangles, 6q98_P-site.pdb_b SES surface, 6q98_P-
    3215 site.pdb_c SES surface, 6q98_P-site.pdb_d SES surface, 6q98_P-site.pdb_e SES
    3216 surface, 6q98_P-site.pdb_f SES surface, 171 atoms, 5572 residues, 188 bonds,
    3217 7701 shapes 
    3218 
    3219 > select up
    3220 
    3221 79762 atoms, 86808 bonds, 5613 residues, 35 models selected 
    3222 
    3223 > select up
    3224 
    3225 89506 atoms, 97607 bonds, 6193 residues, 35 models selected 
    3226 
    3227 > select up
    3228 
    3229 92865 atoms, 100716 bonds, 6898 residues, 35 models selected 
    3230 
    3231 > color sel dark gray
    3232 
    3233 > select ~sel
    3234 
    3235 660692 atoms, 716452 bonds, 8 pseudobonds, 48924 residues, 10 models selected 
    3236 
    3237 > ~select #1
    3238 
    3239 515375 atoms, 558694 bonds, 8 pseudobonds, 38250 residues, 203 models selected 
    3240 
    3241 > ~select #2
    3242 
    3243 370357 atoms, 401729 bonds, 8 pseudobonds, 27270 residues, 148 models selected 
    3244 
    3245 > ~select #3
    3246 
    3247 227821 atoms, 246850 bonds, 6 pseudobonds, 16992 residues, 90 models selected 
    3248 
    3249 > ~select #5
    3250 
    3251 72652 atoms, 78620 bonds, 6 pseudobonds, 5463 residues, 37 models selected 
    3252 
    3253 > ~select #6
    3254 
    3255 63764 atoms, 69108 bonds, 2 pseudobonds, 4717 residues, 35 models selected 
    3256 
    3257 > ~select #7
    3258 
    3259 52045 atoms, 56131 bonds, 4073 residues, 27 models selected 
    3260 
    3261 > color sel lemon chiffon
    3262 
    3263 > select clear
    3264 
    3265 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    3266 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    3267 
    3268 > hide #!4 models
    3269 
    3270 > show #5 models
    3271 
    3272 > show #5 surfaces
    3273 
    3274 > hide #!5 surfaces
    3275 
    3276 > show #!4 models
    3277 
    3278 > hide #!4 models
    3279 
    3280 > select clear
    3281 
    3282 > select #5/4:243
    3283 
    3284 23 atoms, 25 bonds, 1 residue, 1 model selected 
    3285 
    3286 > select up
    3287 
    3288 7831 atoms, 8754 bonds, 372 residues, 3 models selected 
    3289 
    3290 > select up
    3291 
    3292 8698 atoms, 9639 bonds, 481 residues, 3 models selected 
    3293 
    3294 > select up
    3295 
    3296 155169 atoms, 168230 bonds, 11529 residues, 3 models selected 
    3297 
    3298 > select down
    3299 
    3300 8698 atoms, 9639 bonds, 481 residues, 59 models selected 
    3301 
    3302 > delete atoms (#!5 & sel)
    3303 
    3304 > delete bonds (#!5 & sel)
    3305 
    3306 > select clear
    3307 
    3308 > show #!5 surfaces
    3309 
    3310 > hide #!5 cartoons
    3311 
    3312 > hide #!5 cartoons
    3313 
    3314 > hide #!5 atoms
    3315 
    3316 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 6441494 of 7584890
    3317 triangles, 6q9a_PastP-site.pdb_2 SES surface, 495 of 4032392 triangles,
    3318 6q9a_PastP-site.pdb_3 SES surface, 6q9a_PastP-site.pdb_6 SES surface,
    3319 6q9a_PastP-site.pdb_7 SES surface, 136920 of 226010 triangles, 6q9a_PastP-
    3320 site.pdb_B SES surface, 104393 of 284462 triangles, 6q9a_PastP-site.pdb_C SES
    3321 surface, 209235 of 210654 triangles, 6q9a_PastP-site.pdb_D SES surface,
    3322 6q9a_PastP-site.pdb_E SES surface, 173392 of 176940 triangles, 6q9a_PastP-
    3323 site.pdb_F SES surface, 167593 of 170510 triangles, 6q9a_PastP-site.pdb_G SES
    3324 surface, 90520 of 159078 triangles, 6q9a_PastP-site.pdb_H SES surface,
    3325 6q9a_PastP-site.pdb_I SES surface, 34228 of 140114 triangles, 6q9a_PastP-
    3326 site.pdb_J SES surface, 6q9a_PastP-site.pdb_K SES surface, 26026 of 118336
    3327 triangles, 6q9a_PastP-site.pdb_L SES surface, 6q9a_PastP-site.pdb_M SES
    3328 surface, 6q9a_PastP-site.pdb_N SES surface, 6q9a_PastP-site.pdb_O SES surface,
    3329 6q9a_PastP-site.pdb_P SES surface, 33058 of 126368 triangles, 6q9a_PastP-
    3330 site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES surface, 6q9a_PastP-
    3331 site.pdb_S SES surface, 6q9a_PastP-site.pdb_T SES surface, 6q9a_PastP-
    3332 site.pdb_U SES surface, 6q9a_PastP-site.pdb_V SES surface, 6q9a_PastP-
    3333 site.pdb_W SES surface, 6q9a_PastP-site.pdb_X SES surface, 6q9a_PastP-
    3334 site.pdb_Y SES surface, 6q9a_PastP-site.pdb_Z SES surface, 6q9a_PastP-
    3335 site.pdb_a SES surface, 60170 of 90478 triangles, 6q9a_PastP-site.pdb_b SES
    3336 surface, 6q9a_PastP-site.pdb_c SES surface, 6q9a_PastP-site.pdb_d SES surface,
    3337 6q9a_PastP-site.pdb_e SES surface, 6q9a_PastP-site.pdb_f SES surface,
    3338 6q9a_PastP-site.pdb_r SES surface, 3895 of 128798 triangles 
    3339 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 5905425 of 7584890
    3340 triangles, 6q9a_PastP-site.pdb_3 SES surface, 336252 of 336264 triangles,
    3341 6q9a_PastP-site.pdb_6 SES surface, 6q9a_PastP-site.pdb_7 SES surface, 108606
    3342 of 226010 triangles, 6q9a_PastP-site.pdb_B SES surface, 57624 of 284462
    3343 triangles, 6q9a_PastP-site.pdb_C SES surface, 202115 of 210654 triangles,
    3344 6q9a_PastP-site.pdb_D SES surface, 6q9a_PastP-site.pdb_E SES surface, 149064
    3345 of 176940 triangles, 6q9a_PastP-site.pdb_F SES surface, 155194 of 170510
    3346 triangles, 6q9a_PastP-site.pdb_G SES surface, 71071 of 159078 triangles,
    3347 6q9a_PastP-site.pdb_H SES surface, 149520 of 151294 triangles, 6q9a_PastP-
    3348 site.pdb_I SES surface, 9989 of 140114 triangles, 6q9a_PastP-site.pdb_J SES
    3349 surface, 6q9a_PastP-site.pdb_K SES surface, 6727 of 118336 triangles,
    3350 6q9a_PastP-site.pdb_L SES surface, 6q9a_PastP-site.pdb_M SES surface,
    3351 6q9a_PastP-site.pdb_N SES surface, 115431 of 117956 triangles, 6q9a_PastP-
    3352 site.pdb_O SES surface, 6q9a_PastP-site.pdb_P SES surface, 19479 of 126368
    3353 triangles, 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES
    3354 surface, 6q9a_PastP-site.pdb_S SES surface, 6q9a_PastP-site.pdb_T SES surface,
    3355 6q9a_PastP-site.pdb_U SES surface, 6q9a_PastP-site.pdb_V SES surface,
    3356 6q9a_PastP-site.pdb_W SES surface, 6q9a_PastP-site.pdb_X SES surface,
    3357 6q9a_PastP-site.pdb_Y SES surface, 6q9a_PastP-site.pdb_Z SES surface,
    3358 6q9a_PastP-site.pdb_a SES surface, 45322 of 90478 triangles, 6q9a_PastP-
    3359 site.pdb_b SES surface, 6q9a_PastP-site.pdb_c SES surface, 6q9a_PastP-
    3360 site.pdb_d SES surface, 6q9a_PastP-site.pdb_e SES surface, 6q9a_PastP-
    3361 site.pdb_f SES surface 
    3362 
    3363 > color sel dark gray
    3364 
    3365 > select ~sel
    3366 
    3367 744859 atoms, 807529 bonds, 10 pseudobonds, 55341 residues, 11 models selected 
    3368 
    3369 > ~select #1
    3370 
    3371 599542 atoms, 649771 bonds, 10 pseudobonds, 44667 residues, 294 models
    3372 selected 
    3373 
    3374 > ~select #2
    3375 
    3376 454524 atoms, 492806 bonds, 10 pseudobonds, 33687 residues, 239 models
    3377 selected 
    3378 
    3379 > ~select #4
    3380 
    3381 309614 atoms, 335959 bonds, 8 pseudobonds, 22716 residues, 181 models selected 
    3382 
    3383 > ~select #3
    3384 
    3385 167078 atoms, 181080 bonds, 6 pseudobonds, 12438 residues, 124 models selected 
    3386 
    3387 > ~select #6
    3388 
    3389 158190 atoms, 171568 bonds, 2 pseudobonds, 11692 residues, 70 models selected 
    3390 
    3391 > ~select #7
    3392 
    3393 146471 atoms, 158591 bonds, 11048 residues, 62 models selected 
    3394 
    3395 > select clear
    3396 
    3397 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 8614 of 7584890 triangles,
    3398 6q9a_PastP-site.pdb_2 SES surface, 2994293 of 4032392 triangles, 6q9a_PastP-
    3399 site.pdb_7 SES surface, 21762 of 226010 triangles, 6q9a_PastP-site.pdb_a SES
    3400 surface, 13295 of 90478 triangles, 6q9a_PastP-site.pdb_g SES surface,
    3401 6q9a_PastP-site.pdb_h SES surface, 6q9a_PastP-site.pdb_i SES surface,
    3402 6q9a_PastP-site.pdb_j SES surface, 6q9a_PastP-site.pdb_k SES surface, 73366 of
    3403 111852 triangles, 6q9a_PastP-site.pdb_l SES surface, 156653 of 158128
    3404 triangles, 6q9a_PastP-site.pdb_m SES surface, 6q9a_PastP-site.pdb_n SES
    3405 surface, 6q9a_PastP-site.pdb_o SES surface, 6q9a_PastP-site.pdb_p SES surface,
    3406 71091 of 118060 triangles, 6q9a_PastP-site.pdb_q SES surface, 112898 of 136950
    3407 triangles, 6q9a_PastP-site.pdb_r SES surface, 36411 of 128798 triangles,
    3408 6q9a_PastP-site.pdb_s SES surface, 6q9a_PastP-site.pdb_t SES surface, 90024 of
    3409 99746 triangles, 6q9a_PastP-site.pdb_u SES surface, 6q9a_PastP-site.pdb_v SES
    3410 surface, 83615 of 92440 triangles, 6q9a_PastP-site.pdb_w SES surface, 77805 of
    3411 78096 triangles, 6q9a_PastP-site.pdb_x SES surface, 48320 of 94138 triangles,
    3412 6q9a_PastP-site.pdb_y SES surface, 4591 of 94832 triangles, 6q9a_PastP-
    3413 site.pdb_z SES surface 
    3414 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 16652 of 7584890 triangles,
    3415 6q9a_PastP-site.pdb_2 SES surface, 3114666 of 4032392 triangles, 6q9a_PastP-
    3416 site.pdb_7 SES surface, 26718 of 226010 triangles, 6q9a_PastP-site.pdb_a SES
    3417 surface, 15549 of 90478 triangles, 6q9a_PastP-site.pdb_g SES surface,
    3418 6q9a_PastP-site.pdb_h SES surface, 6q9a_PastP-site.pdb_i SES surface,
    3419 6q9a_PastP-site.pdb_j SES surface, 6q9a_PastP-site.pdb_k SES surface, 83802 of
    3420 111852 triangles, 6q9a_PastP-site.pdb_l SES surface, 158100 of 158128
    3421 triangles, 6q9a_PastP-site.pdb_m SES surface, 6q9a_PastP-site.pdb_n SES
    3422 surface, 6q9a_PastP-site.pdb_o SES surface, 6q9a_PastP-site.pdb_p SES surface,
    3423 84029 of 118060 triangles, 6q9a_PastP-site.pdb_q SES surface, 117909 of 136950
    3424 triangles, 6q9a_PastP-site.pdb_r SES surface, 48588 of 128798 triangles,
    3425 6q9a_PastP-site.pdb_s SES surface, 6q9a_PastP-site.pdb_t SES surface, 93982 of
    3426 99746 triangles, 6q9a_PastP-site.pdb_u SES surface, 6q9a_PastP-site.pdb_v SES
    3427 surface, 87926 of 92440 triangles, 6q9a_PastP-site.pdb_w SES surface,
    3428 6q9a_PastP-site.pdb_x SES surface, 56540 of 94138 triangles, 6q9a_PastP-
    3429 site.pdb_y SES surface, 9958 of 94832 triangles, 6q9a_PastP-site.pdb_z SES
    3430 surface 
    3431 
    3432 > select clear
    3433 
    3434 Drag select of 6q9a_PastP-site.pdb_2 SES surface, 679971 of 4032392 triangles,
    3435 6q9a_PastP-site.pdb_g SES surface, 120929 of 207704 triangles, 6q9a_PastP-
    3436 site.pdb_h SES surface, 197305 of 210806 triangles, 6q9a_PastP-site.pdb_i SES
    3437 surface, 191733 of 212800 triangles, 6q9a_PastP-site.pdb_j SES surface, 67187
    3438 of 145330 triangles, 6q9a_PastP-site.pdb_m SES surface, 3103 of 123032
    3439 triangles, 6q9a_PastP-site.pdb_n SES surface, 49700 of 138712 triangles,
    3440 6q9a_PastP-site.pdb_o SES surface, 101443 of 118120 triangles, 6q9a_PastP-
    3441 site.pdb_s SES surface, 98585 of 127050 triangles, 6q9a_PastP-site.pdb_u SES
    3442 surface, 11155 of 90320 triangles 
    3443 
    3444 > select up
    3445 
    3446 186 atoms, 169 bonds, 23 residues, 22 models selected 
    3447 
    3448 > select up
    3449 
    3450 34756 atoms, 38695 bonds, 1772 residues, 22 models selected 
    3451 
    3452 > select up
    3453 
    3454 52070 atoms, 56158 bonds, 4075 residues, 22 models selected 
    3455 
    3456 > color sel lemon chiffon
    3457 
    3458 > select clear
    3459 
    3460 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    3461 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    3462 
    3463 opened ChimeraX session 
    3464 
    3465 > show #!1 models
    3466 
    3467 > hide #!1 models
    3468 
    3469 > hide #!5 models
    3470 
    3471 > show #!6 models
    3472 
    3473 > open C:/Users/claud/Downloads/4v6t-pdb-bundle.tar/4v6t_withEF-G.pdb
    3474 
    3475 Summary of feedback from opening C:/Users/claud/Downloads/4v6t-pdb-
    3476 bundle.tar/4v6t_withEF-G.pdb 
    3477 --- 
    3478 warning | Ignored bad PDB record found on line 158154 
    3479 END 
    3480  
    3481 Chain information for 4v6t_withEF-G.pdb #8 
    3482 --- 
    3483 Chain | Description 
    3484 0 | No description available 
    3485 1 | No description available 
    3486 2 | No description available 
    3487 3 | No description available 
    3488 A | No description available 
    3489 B | No description available 
    3490 C | No description available 
    3491 D | No description available 
    3492 E | No description available 
    3493 F | No description available 
    3494 G | No description available 
    3495 H | No description available 
    3496 I | No description available 
    3497 J | No description available 
    3498 K | No description available 
    3499 L | No description available 
    3500 M | No description available 
    3501 N | No description available 
    3502 O | No description available 
    3503 P | No description available 
    3504 Q | No description available 
    3505 R | No description available 
    3506 S | No description available 
    3507 T | No description available 
    3508 U | No description available 
    3509 V | No description available 
    3510 W | No description available 
    3511 X | No description available 
    3512 Y | No description available 
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    3514 a | No description available 
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    3519 f | No description available 
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    3523 j | No description available 
    3524 k | No description available 
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    3526 m | No description available 
    3527 n | No description available 
    3528 o | No description available 
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    3531 r | No description available 
    3532 s | No description available 
    3533 t | No description available 
    3534 u | No description available 
    3535 v | No description available 
    3536 w | No description available 
    3537 x | No description available 
    3538 y | No description available 
    3539 z | No description available 
    3540  
    3541 
    3542 > select #6/7:359@CG2
    3543 
    3544 1 atom, 1 residue, 1 model selected 
    3545 
    3546 > select #8/V:270@P
    3547 
    3548 1 atom, 1 residue, 1 model selected 
    3549 
    3550 > select #6/4:48@O5'
    3551 
    3552 1 atom, 1 residue, 1 model selected 
    3553 
    3554 > show sel cartoons
    3555 
    3556 > hide sel atoms
    3557 
    3558 > select #6
    3559 
    3560 8888 atoms, 9512 bonds, 4 pseudobonds, 746 residues, 2 models selected 
    3561 
    3562 > hide #!6 models
    3563 
    3564 > ~select #6
    3565 
    3566 6 models selected 
    3567 
    3568 > show #!8 cartoons
    3569 
    3570 > hide #!8 atoms
    3571 
    3572 > show #!6 models
    3573 
    3574 > hide #!6 models
    3575 
    3576 > select #8/X:45
    3577 
    3578 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3579 
    3580 > select up
    3581 
    3582 8876 atoms, 9911 bonds, 424 residues, 1 model selected 
    3583 
    3584 > select up
    3585 
    3586 14983 atoms, 16135 bonds, 1200 residues, 1 model selected 
    3587 
    3588 > select ~sel
    3589 
    3590 887395 atoms, 962408 bonds, 12 pseudobonds, 65619 residues, 13 models selected 
    3591 
    3592 > ~select #7
    3593 
    3594 875676 atoms, 949431 bonds, 10 pseudobonds, 64975 residues, 295 models
    3595 selected 
    3596 
    3597 > ~select #6
    3598 
    3599 866788 atoms, 939919 bonds, 6 pseudobonds, 64229 residues, 288 models selected 
    3600 
    3601 > ~select #5
    3602 
    3603 720317 atoms, 781328 bonds, 6 pseudobonds, 53181 residues, 281 models selected 
    3604 
    3605 > ~select #4
    3606 
    3607 575407 atoms, 624481 bonds, 4 pseudobonds, 42210 residues, 223 models selected 
    3608 
    3609 > ~select #3
    3610 
    3611 432871 atoms, 469602 bonds, 2 pseudobonds, 31932 residues, 166 models selected 
    3612 
    3613 > select #3
    3614 
    3615 142536 atoms, 154879 bonds, 2 pseudobonds, 10278 residues, 2 models selected 
    3616 
    3617 > ~select #2
    3618 
    3619 142536 atoms, 154879 bonds, 2 pseudobonds, 10278 residues, 54 models selected 
    3620 
    3621 > ~select #3
    3622 
    3623 52 models selected 
    3624 
    3625 > select #8/Y:564
    3626 
    3627 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3628 
    3629 > select up
    3630 
    3631 41829 atoms, 46814 bonds, 1956 residues, 1 model selected 
    3632 
    3633 > select down
    3634 
    3635 75 atoms, 8 bonds, 4 residues, 1 model selected 
    3636 
    3637 > select up
    3638 
    3639 41829 atoms, 46814 bonds, 1956 residues, 1 model selected 
    3640 
    3641 > select clear
    3642 
    3643 > select up
    3644 
    3645 8875 atoms, 9910 bonds, 424 residues, 1 model selected 
    3646 
    3647 > select up
    3648 
    3649 14983 atoms, 16135 bonds, 1200 residues, 1 model selected 
    3650 
    3651 > select ~sel
    3652 
    3653 887395 atoms, 962408 bonds, 12 pseudobonds, 65619 residues, 13 models selected 
    3654 
    3655 > ~select #7
    3656 
    3657 875676 atoms, 949431 bonds, 10 pseudobonds, 64975 residues, 295 models
    3658 selected 
    3659 
    3660 > ~select #6
    3661 
    3662 866788 atoms, 939919 bonds, 6 pseudobonds, 64229 residues, 288 models selected 
    3663 
    3664 > ~select #5
    3665 
    3666 720317 atoms, 781328 bonds, 6 pseudobonds, 53181 residues, 281 models selected 
    3667 
    3668 > ~select #4
    3669 
    3670 575407 atoms, 624481 bonds, 4 pseudobonds, 42210 residues, 223 models selected 
    3671 
    3672 > ~select #3
    3673 
    3674 432871 atoms, 469602 bonds, 2 pseudobonds, 31932 residues, 166 models selected 
    3675 
    3676 > ~select #2
    3677 
    3678 287853 atoms, 312637 bonds, 2 pseudobonds, 20952 residues, 113 models selected 
    3679 
    3680 > ~select #1
    3681 
    3682 142536 atoms, 154879 bonds, 2 pseudobonds, 10278 residues, 56 models selected 
    3683 
    3684 > delete atoms (#!8 & sel)
    3685 
    3686 > delete bonds (#!8 & sel)
    3687 
    3688 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    3689 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    3690 
    3691 > hide #!8 models
    3692 
    3693 > open C:/Users/claud/Downloads/6q98-pdb-bundle.tar/6q98_P-site.pdb
    3694 
    3695 Summary of feedback from opening C:/Users/claud/Downloads/6q98-pdb-
    3696 bundle.tar/6q98_P-site.pdb 
    3697 --- 
    3698 warning | Ignored bad PDB record found on line 155175 
    3699 END 
    3700  
    3701 Chain information for 6q98_P-site.pdb #9 
    3702 --- 
    3703 Chain | Description 
    3704 1 | No description available 
    3705 2 | No description available 
    3706 3 | No description available 
    3707 4 | No description available 
    3708 5 | No description available 
    3709 6 | No description available 
    3710 B | No description available 
    3711 C | No description available 
    3712 D | No description available 
    3713 E | No description available 
    3714 F | No description available 
    3715 G | No description available 
    3716 H | No description available 
    3717 I | No description available 
    3718 J | No description available 
    3719 K | No description available 
    3720 L | No description available 
    3721 M | No description available 
    3722 N | No description available 
    3723 O | No description available 
    3724 P | No description available 
    3725 Q | No description available 
    3726 R | No description available 
    3727 S | No description available 
    3728 T | No description available 
    3729 U | No description available 
    3730 V | No description available 
    3731 W | No description available 
    3732 X | No description available 
    3733 Y | No description available 
    3734 Z | No description available 
    3735 a | No description available 
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    3738 d | No description available 
    3739 e | No description available 
    3740 f | No description available 
    3741 g | No description available 
    3742 h | No description available 
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    3753 s | No description available 
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    3756 v | No description available 
    3757 w | No description available 
    3758 x | No description available 
    3759 y | No description available 
    3760 z | No description available 
    3761  
    3762 
    3763 > show #!9 cartoons
    3764 
    3765 > hide #!9 atoms
    3766 
    3767 > select #9/4:272
    3768 
    3769 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3770 
    3771 > select up
    3772 
    3773 7795 atoms, 8717 bonds, 367 residues, 1 model selected 
    3774 
    3775 > select up
    3776 
    3777 8968 atoms, 9912 bonds, 514 residues, 1 model selected 
    3778 
    3779 > select ~sel
    3780 
    3781 904752 atoms, 980511 bonds, 16 pseudobonds, 67512 residues, 15 models selected 
    3782 
    3783 > ~select #8
    3784 
    3785 889769 atoms, 964376 bonds, 12 pseudobonds, 66312 residues, 297 models
    3786 selected 
    3787 
    3788 > ~select #7
    3789 
    3790 878050 atoms, 951399 bonds, 10 pseudobonds, 65668 residues, 295 models
    3791 selected 
    3792 
    3793 > ~select #6
    3794 
    3795 869162 atoms, 941887 bonds, 6 pseudobonds, 64922 residues, 288 models selected 
    3796 
    3797 > ~select #5
    3798 
    3799 722691 atoms, 783296 bonds, 6 pseudobonds, 53874 residues, 281 models selected 
    3800 
    3801 > ~select #4
    3802 
    3803 577781 atoms, 626449 bonds, 4 pseudobonds, 42903 residues, 223 models selected 
    3804 
    3805 > ~select #3
    3806 
    3807 435245 atoms, 471570 bonds, 2 pseudobonds, 32625 residues, 166 models selected 
    3808 
    3809 > ~select #2
    3810 
    3811 290227 atoms, 314605 bonds, 2 pseudobonds, 21645 residues, 113 models selected 
    3812 
    3813 > ~select #1
    3814 
    3815 144910 atoms, 156847 bonds, 2 pseudobonds, 10971 residues, 56 models selected 
    3816 
    3817 > delete atoms (#!9 & sel)
    3818 
    3819 > delete bonds (#!9 & sel)
    3820 
    3821 > hide #!9 models
    3822 
    3823 > open C:/Users/claud/Downloads/6q9a-pdb-bundle.tar/6q9a_PastP-site.pdb
    3824 
    3825 Summary of feedback from opening C:/Users/claud/Downloads/6q9a-pdb-
    3826 bundle.tar/6q9a_PastP-site.pdb 
    3827 --- 
    3828 warning | Ignored bad PDB record found on line 156504 
    3829 END 
    3830  
    3831 Chain information for 6q9a_PastP-site.pdb #10 
    3832 --- 
    3833 Chain | Description 
    3834 1 | No description available 
    3835 2 | No description available 
    3836 3 | No description available 
    3837 4 | No description available 
    3838 5 | No description available 
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    3840 7 | No description available 
    3841 B | No description available 
    3842 C | No description available 
    3843 D | No description available 
    3844 E | No description available 
    3845 F | No description available 
    3846 G | No description available 
    3847 H | No description available 
    3848 I | No description available 
    3849 J | No description available 
    3850 K | No description available 
    3851 L | No description available 
    3852 M | No description available 
    3853 N | No description available 
    3854 O | No description available 
    3855 P | No description available 
    3856 Q | No description available 
    3857 R | No description available 
    3858 S | No description available 
    3859 T | No description available 
    3860 U | No description available 
    3861 V | No description available 
    3862 W | No description available 
    3863 X | No description available 
    3864 Y | No description available 
    3865 Z | No description available 
    3866 a | No description available 
    3867 b | No description available 
    3868 c | No description available 
    3869 d | No description available 
    3870 e | No description available 
    3871 f | No description available 
    3872 g | No description available 
    3873 h | No description available 
    3874 i | No description available 
    3875 j | No description available 
    3876 k | No description available 
    3877 l | No description available 
    3878 m | No description available 
    3879 n | No description available 
    3880 o | No description available 
    3881 p | No description available 
    3882 q | No description available 
    3883 r | No description available 
    3884 s | No description available 
    3885 t | No description available 
    3886 u | No description available 
    3887 v | No description available 
    3888 w | No description available 
    3889 x | No description available 
    3890 y | No description available 
    3891 z | No description available 
    3892  
    3893 
    3894 > show #10 cartoons
    3895 
    3896 > hide #10 atoms
    3897 
    3898 > select up
    3899 
    3900 7831 atoms, 8755 bonds, 372 residues, 1 model selected 
    3901 
    3902 > select up
    3903 
    3904 8698 atoms, 9639 bonds, 481 residues, 1 model selected 
    3905 
    3906 > select ~sel
    3907 
    3908 915281 atoms, 992167 bonds, 14 pseudobonds, 68103 residues, 15 models selected 
    3909 
    3910 > ~select #9
    3911 
    3912 906313 atoms, 982255 bonds, 14 pseudobonds, 67589 residues, 298 models
    3913 selected 
    3914 
    3915 > ~select #8
    3916 
    3917 891330 atoms, 966120 bonds, 10 pseudobonds, 66389 residues, 296 models
    3918 selected 
    3919 
    3920 > ~select #7
    3921 
    3922 879611 atoms, 953143 bonds, 8 pseudobonds, 65745 residues, 294 models selected 
    3923 
    3924 > ~select #6
    3925 
    3926 870723 atoms, 943631 bonds, 4 pseudobonds, 64999 residues, 287 models selected 
    3927 
    3928 > ~select #5
    3929 
    3930 724252 atoms, 785040 bonds, 4 pseudobonds, 53951 residues, 280 models selected 
    3931 
    3932 > ~select #4
    3933 
    3934 579342 atoms, 628193 bonds, 2 pseudobonds, 42980 residues, 222 models selected 
    3935 
    3936 > ~select #3
    3937 
    3938 436806 atoms, 473314 bonds, 32702 residues, 165 models selected 
    3939 
    3940 > ~select #2
    3941 
    3942 291788 atoms, 316349 bonds, 21722 residues, 112 models selected 
    3943 
    3944 > ~select #1
    3945 
    3946 146471 atoms, 158591 bonds, 11048 residues, 55 models selected 
    3947 
    3948 > delete atoms sel
    3949 
    3950 > delete bonds sel
    3951 
    3952 > show #!5 models
    3953 
    3954 > hide #!5 models
    3955 
    3956 > set bgColor white
    3957 
    3958 > set bgColor black
    3959 
    3960 > show #!6 models
    3961 
    3962 > hide #10 models
    3963 
    3964 > show #!8 models
    3965 
    3966 > show #!6,8 surfaces
    3967 
    3968 > show #!7 models
    3969 
    3970 > hide #!7 models
    3971 
    3972 > hide #!8 models
    3973 
    3974 > show #!9 models
    3975 
    3976 > show #!6,9 surfaces
    3977 
    3978 > hide #!6 models
    3979 
    3980 > hide #!9 models
    3981 
    3982 > show #10 models
    3983 
    3984 > show #10 surfaces
    3985 
    3986 > show #!9 models
    3987 
    3988 > hide #!10 models
    3989 
    3990 > show #!8 models
    3991 
    3992 > hide #!9 models
    3993 
    3994 > hide #!8 cartoons
    3995 
    3996 > show #!8 cartoons
    3997 
    3998 > show #!6 models
    3999 
    4000 > hide #!8 models
    4001 
    4002 > select #6/5:18@P
    4003 
    4004 1 atom, 1 residue, 1 model selected 
    4005 
    4006 > select up
    4007 
    4008 20 atoms, 21 bonds, 1 residue, 2 models selected 
    4009 
    4010 > select up
    4011 
    4012 104 atoms, 116 bonds, 5 residues, 2 models selected 
    4013 
    4014 > color (#!6 & sel) cyan
    4015 
    4016 > select #6/4:44@O4'
    4017 
    4018 1 atom, 1 residue, 1 model selected 
    4019 
    4020 > select #6/3:43@N2
    4021 
    4022 1 atom, 1 residue, 1 model selected 
    4023 
    4024 > select up
    4025 
    4026 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4027 
    4028 > select up
    4029 
    4030 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    4031 
    4032 > color (#!6 & sel) forest green
    4033 
    4034 > select #6/7:164@CG
    4035 
    4036 1 atom, 1 residue, 1 model selected 
    4037 
    4038 > select up
    4039 
    4040 7 atoms, 7 bonds, 1 residue, 2 models selected 
    4041 
    4042 > select up
    4043 
    4044 62 atoms, 64 bonds, 8 residues, 2 models selected 
    4045 
    4046 > select up
    4047 
    4048 3015 atoms, 3075 bonds, 381 residues, 2 models selected 
    4049 
    4050 > ui tool show "Color Actions"
    4051 
    4052 > color sel light sea green
    4053 
    4054 > select #6/6:24@C8
    4055 
    4056 1 atom, 1 residue, 1 model selected 
    4057 
    4058 > select up
    4059 
    4060 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4061 
    4062 > select up
    4063 
    4064 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    4065 
    4066 > select up
    4067 
    4068 8888 atoms, 9512 bonds, 746 residues, 2 models selected 
    4069 
    4070 > select down
    4071 
    4072 1305 atoms, 1454 bonds, 62 residues, 7 models selected 
    4073 
    4074 > color sel royal blue
    4075 
    4076 > select #6/h:91@CA
    4077 
    4078 1 atom, 1 residue, 1 model selected 
    4079 
    4080 > select up
    4081 
    4082 4 atoms, 3 bonds, 1 residue, 2 models selected 
    4083 
    4084 > select up
    4085 
    4086 112 atoms, 112 bonds, 13 residues, 2 models selected 
    4087 
    4088 > select up
    4089 
    4090 1184 atoms, 1203 bonds, 144 residues, 2 models selected 
    4091 
    4092 > color sel medium spring green
    4093 
    4094 > color sel medium purple
    4095 
    4096 > select #6/4:44@O3'
    4097 
    4098 1 atom, 1 residue, 1 model selected 
    4099 
    4100 > select up
    4101 
    4102 22 atoms, 24 bonds, 1 residue, 2 models selected 
    4103 
    4104 > select up
    4105 
    4106 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    4107 
    4108 > color sel indian red
    4109 
    4110 > color sel deep sky blue
    4111 
    4112 > color sel cornflower blue
    4113 
    4114 > color sel dodger blue
    4115 
    4116 > color sel cadet blue
    4117 
    4118 > color sel blue
    4119 
    4120 > color sel medium violet red
    4121 
    4122 > color sel navy
    4123 
    4124 > color sel medium spring green
    4125 
    4126 > color sel pale green
    4127 
    4128 > color sel light coral
    4129 
    4130 > color sel sky blue
    4131 
    4132 > color sel dark magenta
    4133 
    4134 > color sel magenta
    4135 
    4136 > color sel deep pink
    4137 
    4138 > color sel medium violet red
    4139 
    4140 > color sel dark magenta
    4141 
    4142 > color sel dark orchid
    4143 
    4144 > color sel dark magenta
    4145 
    4146 > color sel medium purple
    4147 
    4148 > color sel purple
    4149 
    4150 > color sel dark magenta
    4151 
    4152 > color sel fire brick
    4153 
    4154 > color sel dark red
    4155 
    4156 > color sel crimson
    4157 
    4158 > color sel brown
    4159 
    4160 > color sel dark magenta
    4161 
    4162 > color sel violet
    4163 
    4164 > color sel aquamarine
    4165 
    4166 > color sel light sky blue
    4167 
    4168 > color sel pale violet red
    4169 
    4170 > color sel salmon
    4171 
    4172 > color sel light salmon
    4173 
    4174 > color sel dark salmon
    4175 
    4176 > color sel pale violet red
    4177 
    4178 > color sel medium violet red
    4179 
    4180 > color sel pale violet red
    4181 
    4182 > color sel midnight blue
    4183 
    4184 > color sel dark slate gray
    4185 
    4186 > color sel dark slate blue
    4187 
    4188 > color sel slate blue
    4189 
    4190 > color sel rebecca purple
    4191 
    4192 > color sel slate blue
    4193 
    4194 > color sel dark magenta
    4195 
    4196 > color sel slate blue
    4197 
    4198 > select clear
    4199 
    4200 > show #!7 models
    4201 
    4202 > hide #!6 models
    4203 
    4204 Drag select of 6q97_A-site.pdb_4 SES surface, 382168 of 1094402 triangles, 123
    4205 residues, 2 pseudobonds 
    4206 
    4207 > select up
    4208 
    4209 7134 atoms, 7978 bonds, 2 pseudobonds, 334 residues, 3 models selected 
    4210 
    4211 > color sel royal blue
    4212 
    4213 > select #7/5:57@CD1
    4214 
    4215 1 atom, 1 residue, 1 model selected 
    4216 
    4217 > select up
    4218 
    4219 8 atoms, 7 bonds, 1 residue, 2 models selected 
    4220 
    4221 > select up
    4222 
    4223 355 atoms, 360 bonds, 47 residues, 2 models selected 
    4224 
    4225 > select up
    4226 
    4227 1170 atoms, 1191 bonds, 145 residues, 2 models selected 
    4228 
    4229 > color sel medium purple
    4230 
    4231 > select #7/7:43@C5'
    4232 
    4233 1 atom, 1 residue, 1 model selected 
    4234 
    4235 > select up
    4236 
    4237 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4238 
    4239 > select up
    4240 
    4241 1644 atoms, 1836 bonds, 77 residues, 2 models selected 
    4242 
    4243 > color sel forest green
    4244 
    4245 > select #7/8:44@C4'
    4246 
    4247 1 atom, 1 residue, 1 model selected 
    4248 
    4249 > select up
    4250 
    4251 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4252 
    4253 > select up
    4254 
    4255 1638 atoms, 1830 bonds, 77 residues, 2 models selected 
    4256 
    4257 > select down
    4258 
    4259 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4260 
    4261 > select up
    4262 
    4263 1638 atoms, 1830 bonds, 77 residues, 2 models selected 
    4264 
    4265 > color sel slate blue
    4266 
    4267 > select clear
    4268 
    4269 > select #7/9:3@C8
    4270 
    4271 1 atom, 1 residue, 1 model selected 
    4272 
    4273 > select up
    4274 
    4275 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4276 
    4277 > select up
    4278 
    4279 128 atoms, 142 bonds, 6 residues, 2 models selected 
    4280 
    4281 > color sel cyan
    4282 
    4283 > select clear
    4284 
    4285 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4286 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4287 
    4288 > hide #!7 models
    4289 
    4290 > show #!8 models
    4291 
    4292 Drag select of 4v6t_withEF-G.pdb_V SES surface, 362955 of 984868 triangles,
    4293 122 residues 
    4294 Drag select of 4v6t_withEF-G.pdb_V SES surface, 394816 of 984868 triangles,
    4295 135 residues 
    4296 
    4297 > select up
    4298 
    4299 7135 atoms, 7979 bonds, 334 residues, 2 models selected 
    4300 
    4301 > color sel royal blue
    4302 
    4303 > select clear
    4304 
    4305 > select #8/W:88@CD
    4306 
    4307 1 atom, 1 residue, 1 model selected 
    4308 
    4309 > select up
    4310 
    4311 11 atoms, 10 bonds, 1 residue, 2 models selected 
    4312 
    4313 > select up
    4314 
    4315 78 atoms, 78 bonds, 9 residues, 2 models selected 
    4316 
    4317 > select up
    4318 
    4319 993 atoms, 1011 bonds, 122 residues, 2 models selected 
    4320 
    4321 > color sel medium purple
    4322 
    4323 > select #8/X:22@O5'
    4324 
    4325 1 atom, 1 residue, 1 model selected 
    4326 
    4327 > select up
    4328 
    4329 22 atoms, 24 bonds, 1 residue, 2 models selected 
    4330 
    4331 > select up
    4332 
    4333 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    4334 
    4335 > color sel slate blue
    4336 
    4337 > select #8/Y:160@CA
    4338 
    4339 1 atom, 1 residue, 1 model selected 
    4340 
    4341 > select up
    4342 
    4343 11 atoms, 10 bonds, 1 residue, 2 models selected 
    4344 
    4345 > select up
    4346 
    4347 57 atoms, 56 bonds, 7 residues, 2 models selected 
    4348 
    4349 > select up
    4350 
    4351 5215 atoms, 5313 bonds, 667 residues, 2 models selected 
    4352 
    4353 > color sel pale violet red
    4354 
    4355 > color sel dark cyan
    4356 
    4357 > color sel teal
    4358 
    4359 > color sel medium aquamarine
    4360 
    4361 > color sel turquoise
    4362 
    4363 > color sel medium turquoise
    4364 
    4365 > color sel medium aquamarine
    4366 
    4367 > select #8/X:9@N1
    4368 
    4369 1 atom, 1 residue, 1 model selected 
    4370 
    4371 > select up
    4372 
    4373 23 atoms, 25 bonds, 1 residue, 2 models selected 
    4374 
    4375 > select up
    4376 
    4377 1640 atoms, 1832 bonds, 77 residues, 2 models selected 
    4378 
    4379 > color sel forest green
    4380 
    4381 > select clear
    4382 
    4383 > show #!9 models
    4384 
    4385 > hide #!8 models
    4386 
    4387 > show #!10 models
    4388 
    4389 Drag select of 6q98_P-site.pdb_4 SES surface, 190480 of 1142414 triangles,
    4390 6q9a_PastP-site.pdb_4 SES surface, 168364 of 1159708 triangles, 123 residues 
    4391 
    4392 > select up
    4393 
    4394 15516 atoms, 17362 bonds, 726 residues, 4 models selected 
    4395 
    4396 > color sel royal blue
    4397 
    4398 > select clear
    4399 
    4400 > select #9/5:29@CB
    4401 
    4402 1 atom, 1 residue, 1 model selected 
    4403 
    4404 > select up
    4405 
    4406 20 atoms, 19 bonds, 2 residues, 4 models selected 
    4407 
    4408 > select up
    4409 
    4410 409 atoms, 414 bonds, 53 residues, 4 models selected 
    4411 
    4412 > select up
    4413 
    4414 2149 atoms, 2189 bonds, 268 residues, 4 models selected 
    4415 
    4416 > color sel medium purple
    4417 
    4418 > select clear
    4419 
    4420 > show #!8 models
    4421 
    4422 > show #!7 models
    4423 
    4424 > show #!6 models
    4425 
    4426 > show #!5 models
    4427 
    4428 > show #!4 models
    4429 
    4430 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4431 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4432 
    4433 > show #!3 models
    4434 
    4435 Drag select of 4v6t_withEF-G.pdb_l SES surface, 91153 of 154734 triangles,
    4436 6q98_P-site.pdb_1 SES surface, 755 of 7798404 triangles, 6q9a_PastP-site.pdb_1
    4437 SES surface, 1167 of 7584890 triangles 
    4438 Drag select of 4v6t_withEF-G.pdb_l SES surface, 81039 of 154734 triangles 
    4439 
    4440 > select down
    4441 
    4442 1 model selected 
    4443 
    4444 > select down
    4445 
    4446 1 model selected 
    4447 
    4448 > select up
    4449 
    4450 141426 atoms, 2 pseudobonds, 10129 residues, 54 models selected 
    4451 
    4452 > select down
    4453 
    4454 Nothing selected 
    4455 
    4456 > hide #!3 models
    4457 
    4458 > show #!3 models
    4459 
    4460 > hide #!4 models
    4461 
    4462 > hide #!5 models
    4463 
    4464 > hide #!6 models
    4465 
    4466 > hide #!7 models
    4467 
    4468 > hide #!8 models
    4469 
    4470 > hide #!9 models
    4471 
    4472 > hide #!10 models
    4473 
    4474 Drag select of 4v6t_withEF-G.pdb_l SES surface, 90513 of 154734 triangles 
    4475 Drag select of 4v6t_withEF-G.pdb_l SES surface, 91355 of 154734 triangles 
    4476 
    4477 > hide #!3 surfaces
    4478 
    4479 > show #!3 surfaces
    4480 
    4481 > surface hidePatches #3.29
    4482 
    4483 > show #!4 models
    4484 
    4485 > select clear
    4486 
    4487 > hide #!4 models
    4488 
    4489 > show #!4 models
    4490 
    4491 > hide #!4 models
    4492 
    4493 > show #!1 models
    4494 
    4495 > hide #!1 models
    4496 
    4497 > show #!1 models
    4498 
    4499 > show #!2 models
    4500 
    4501 > hide #!3 models
    4502 
    4503 > hide #!1 models
    4504 
    4505 Drag select of 6q97_A-site.pdb_1 SES surface, 7456581 of 7969538 triangles,
    4506 6q97_A-site.pdb_2 SES surface, 11311 of 4256176 triangles, 6q97_A-site.pdb_3
    4507 SES surface, 6q97_A-site.pdb_6 SES surface, 6q97_A-site.pdb_B SES surface,
    4508 221892 of 295732 triangles, 6q97_A-site.pdb_C SES surface, 6q97_A-site.pdb_D
    4509 SES surface, 6q97_A-site.pdb_E SES surface, 167364 of 190010 triangles,
    4510 6q97_A-site.pdb_F SES surface, 187344 of 189188 triangles, 6q97_A-site.pdb_G
    4511 SES surface, 148494 of 168232 triangles, 6q97_A-site.pdb_H SES surface, 152929
    4512 of 153748 triangles, 6q97_A-site.pdb_I SES surface, 13713 of 172054 triangles,
    4513 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_K SES surface, 64670 of 121150
    4514 triangles, 6q97_A-site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface,
    4515 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_O SES surface, 6q97_A-
    4516 site.pdb_P SES surface, 100475 of 137720 triangles, 6q97_A-site.pdb_Q SES
    4517 surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface, 6q97_A-
    4518 site.pdb_T SES surface, 6q97_A-site.pdb_U SES surface, 6q97_A-site.pdb_V SES
    4519 surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES surface, 6q97_A-
    4520 site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface, 6q97_A-site.pdb_a SES
    4521 surface, 42705 of 93508 triangles, 6q97_A-site.pdb_b SES surface, 6q97_A-
    4522 site.pdb_c SES surface, 6q97_A-site.pdb_d SES surface, 6q97_A-site.pdb_e SES
    4523 surface, 6q97_A-site.pdb_f SES surface, 6q97_A-site.pdb_p SES surface, 153 of
    4524 123830 triangles 
    4525 Drag select of 6q97_A-site.pdb_1 SES surface, 6917897 of 7969538 triangles,
    4526 6q97_A-site.pdb_2 SES surface, 13172 of 4256176 triangles, 6q97_A-site.pdb_3
    4527 SES surface, 6q97_A-site.pdb_6 SES surface, 6q97_A-site.pdb_B SES surface,
    4528 196912 of 295732 triangles, 6q97_A-site.pdb_C SES surface, 221995 of 231886
    4529 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_E SES surface,
    4530 158771 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 127723 of 189188
    4531 triangles, 6q97_A-site.pdb_G SES surface, 153800 of 168232 triangles, 6q97_A-
    4532 site.pdb_H SES surface, 70038 of 153748 triangles, 6q97_A-site.pdb_J SES
    4533 surface, 6q97_A-site.pdb_K SES surface, 7842 of 121150 triangles, 6q97_A-
    4534 site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 150944 of 152098
    4535 triangles, 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_O SES surface,
    4536 6q97_A-site.pdb_P SES surface, 20771 of 137720 triangles, 6q97_A-site.pdb_Q
    4537 SES surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface,
    4538 6q97_A-site.pdb_T SES surface, 6q97_A-site.pdb_U SES surface, 6q97_A-
    4539 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES
    4540 surface, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface, 6q97_A-
    4541 site.pdb_a SES surface, 40195 of 93508 triangles, 6q97_A-site.pdb_b SES
    4542 surface, 6q97_A-site.pdb_c SES surface, 6q97_A-site.pdb_d SES surface, 6q97_A-
    4543 site.pdb_e SES surface, 6q97_A-site.pdb_f SES surface, 45830 of 47780
    4544 triangles, 6q97_A-site.pdb_p SES surface, 1269 of 123830 triangles 
    4545 
    4546 > select clear
    4547 
    4548 > select clear
    4549 
    4550 Drag select of 6q97_A-site.pdb_1 SES surface, 4885059 of 7969538 triangles,
    4551 6q97_A-site.pdb_3 SES surface, 338245 of 350468 triangles, 6q97_A-site.pdb_6
    4552 SES surface, 30634 of 33600 triangles, 6q97_A-site.pdb_B SES surface, 7903 of
    4553 295732 triangles, 6q97_A-site.pdb_C SES surface, 116062 of 231886 triangles,
    4554 6q97_A-site.pdb_D SES surface, 135258 of 235976 triangles, 6q97_A-site.pdb_E
    4555 SES surface, 3403 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 51153 of
    4556 189188 triangles, 6q97_A-site.pdb_G SES surface, 79046 of 168232 triangles,
    4557 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_L SES surface, 187675 of 188938
    4558 triangles, 6q97_A-site.pdb_M SES surface, 58774 of 152098 triangles, 6q97_A-
    4559 site.pdb_N SES surface, 75747 of 127082 triangles, 6q97_A-site.pdb_O SES
    4560 surface, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES surface, 122070
    4561 of 126390 triangles, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES
    4562 surface, 6q97_A-site.pdb_U SES surface, 75593 of 116360 triangles, 6q97_A-
    4563 site.pdb_V SES surface, 101270 of 101454 triangles, 6q97_A-site.pdb_W SES
    4564 surface, 82378 of 84440 triangles, 6q97_A-site.pdb_X SES surface, 6q97_A-
    4565 site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface, 6q97_A-site.pdb_a SES
    4566 surface, 3408 of 93508 triangles, 6q97_A-site.pdb_b SES surface, 6q97_A-
    4567 site.pdb_c SES surface, 60732 of 63158 triangles, 6q97_A-site.pdb_d SES
    4568 surface, 6q97_A-site.pdb_e SES surface, 6q97_A-site.pdb_f SES surface, 1953 of
    4569 47780 triangles 
    4570 
    4571 > select up
    4572 
    4573 55859 atoms, 4450 residues, 57 models selected 
    4574 
    4575 > select down
    4576 
    4577 Nothing selected 
    4578 Drag select of 6q97_A-site.pdb_1 SES surface, 5495224 of 7969538 triangles,
    4579 6q97_A-site.pdb_3 SES surface, 350080 of 350468 triangles, 6q97_A-site.pdb_6
    4580 SES surface, 6q97_A-site.pdb_B SES surface, 29299 of 295732 triangles, 6q97_A-
    4581 site.pdb_C SES surface, 155702 of 231886 triangles, 6q97_A-site.pdb_D SES
    4582 surface, 6q97_A-site.pdb_E SES surface, 33622 of 190010 triangles, 6q97_A-
    4583 site.pdb_F SES surface, 73695 of 189188 triangles, 6q97_A-site.pdb_G SES
    4584 surface, 97538 of 168232 triangles, 6q97_A-site.pdb_H SES surface, 3185 of
    4585 153748 triangles, 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_L SES
    4586 surface, 6q97_A-site.pdb_M SES surface, 95452 of 152098 triangles, 6q97_A-
    4587 site.pdb_N SES surface, 109040 of 127082 triangles, 6q97_A-site.pdb_O SES
    4588 surface, 6q97_A-site.pdb_P SES surface, 38 of 137720 triangles, 6q97_A-
    4589 site.pdb_Q SES surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES
    4590 surface, 6q97_A-site.pdb_T SES surface, 6q97_A-site.pdb_U SES surface, 6q97_A-
    4591 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES
    4592 surface, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface, 6q97_A-
    4593 site.pdb_a SES surface, 9929 of 93508 triangles, 6q97_A-site.pdb_b SES
    4594 surface, 6q97_A-site.pdb_c SES surface, 6q97_A-site.pdb_d SES surface, 6q97_A-
    4595 site.pdb_e SES surface, 6q97_A-site.pdb_f SES surface, 10332 of 47780
    4596 triangles 
    4597 Drag select of 6q97_A-site.pdb_1 SES surface, 5094108 of 7969538 triangles,
    4598 6q97_A-site.pdb_3 SES surface, 336907 of 350468 triangles, 6q97_A-site.pdb_6
    4599 SES surface, 31838 of 33600 triangles, 6q97_A-site.pdb_B SES surface, 11119 of
    4600 295732 triangles, 6q97_A-site.pdb_C SES surface, 128627 of 231886 triangles,
    4601 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_E SES surface, 6166 of 190010
    4602 triangles, 6q97_A-site.pdb_F SES surface, 57846 of 189188 triangles, 6q97_A-
    4603 site.pdb_G SES surface, 83321 of 168232 triangles, 6q97_A-site.pdb_H SES
    4604 surface, 23 of 153748 triangles, 6q97_A-site.pdb_J SES surface, 6q97_A-
    4605 site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 69065 of 152098
    4606 triangles, 6q97_A-site.pdb_N SES surface, 87261 of 127082 triangles, 6q97_A-
    4607 site.pdb_O SES surface, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES
    4608 surface, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES surface, 112827
    4609 of 112872 triangles, 6q97_A-site.pdb_U SES surface, 6q97_A-site.pdb_V SES
    4610 surface, 6q97_A-site.pdb_W SES surface, 83568 of 84440 triangles, 6q97_A-
    4611 site.pdb_X SES surface, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES
    4612 surface, 6q97_A-site.pdb_a SES surface, 5423 of 93508 triangles, 6q97_A-
    4613 site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 62629 of 63158
    4614 triangles, 6q97_A-site.pdb_d SES surface, 6q97_A-site.pdb_e SES surface,
    4615 6q97_A-site.pdb_f SES surface, 4019 of 47780 triangles 
    4616 
    4617 > select up
    4618 
    4619 9 atoms, 8 bonds, 1 residue, 2 models selected 
    4620 
    4621 > select up
    4622 
    4623 67 atoms, 68 bonds, 8 residues, 2 models selected 
    4624 
    4625 > select up
    4626 
    4627 984 atoms, 998 bonds, 135 residues, 2 models selected 
    4628 Drag select of 6q97_A-site.pdb_1 SES surface, 3731009 of 7969538 triangles,
    4629 6q97_A-site.pdb_3 SES surface, 6q97_A-site.pdb_6 SES surface, 10294 of 33600
    4630 triangles, 6q97_A-site.pdb_C SES surface, 43178 of 231886 triangles, 6q97_A-
    4631 site.pdb_D SES surface, 229647 of 235976 triangles, 6q97_A-site.pdb_E SES
    4632 surface, 139012 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 101290 of
    4633 189188 triangles, 6q97_A-site.pdb_H SES surface, 136830 of 153748 triangles,
    4634 6q97_A-site.pdb_I SES surface, 5064 of 172054 triangles, 6q97_A-site.pdb_J SES
    4635 surface, 149752 of 151320 triangles, 6q97_A-site.pdb_L SES surface, 6q97_A-
    4636 site.pdb_M SES surface, 133354 of 152098 triangles, 6q97_A-site.pdb_O SES
    4637 surface, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES surface, 6q97_A-
    4638 site.pdb_S SES surface, 98853 of 122990 triangles, 6q97_A-site.pdb_T SES
    4639 surface, 5887 of 112872 triangles, 6q97_A-site.pdb_U SES surface, 6q97_A-
    4640 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES
    4641 surface, 2489 of 94844 triangles, 6q97_A-site.pdb_Y SES surface, 26028 of
    4642 74596 triangles, 6q97_A-site.pdb_Z SES surface, 6q97_A-site.pdb_a SES surface,
    4643 35132 of 93508 triangles, 6q97_A-site.pdb_b SES surface, 45172 of 76920
    4644 triangles, 6q97_A-site.pdb_c SES surface, 62373 of 63158 triangles, 6q97_A-
    4645 site.pdb_d SES surface, 4840 of 68556 triangles, 6q97_A-site.pdb_e SES
    4646 surface, 6q97_A-site.pdb_f SES surface, 33084 of 47780 triangles 
    4647 Drag select of 6q97_A-site.pdb_1 SES surface, 3193543 of 7969538 triangles,
    4648 6q97_A-site.pdb_3 SES surface, 6q97_A-site.pdb_C SES surface, 88400 of 231886
    4649 triangles, 6q97_A-site.pdb_D SES surface, 206092 of 235976 triangles, 6q97_A-
    4650 site.pdb_E SES surface, 106039 of 190010 triangles, 6q97_A-site.pdb_F SES
    4651 surface, 152053 of 189188 triangles, 6q97_A-site.pdb_H SES surface, 6q97_A-
    4652 site.pdb_I SES surface, 60448 of 172054 triangles, 6q97_A-site.pdb_J SES
    4653 surface, 6q97_A-site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 135601
    4654 of 152098 triangles, 6q97_A-site.pdb_O SES surface, 6q97_A-site.pdb_Q SES
    4655 surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES surface, 87452
    4656 of 122990 triangles, 6q97_A-site.pdb_U SES surface, 108820 of 116360
    4657 triangles, 6q97_A-site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 81064
    4658 of 84440 triangles, 6q97_A-site.pdb_Z SES surface, 6q97_A-site.pdb_a SES
    4659 surface, 23935 of 93508 triangles, 6q97_A-site.pdb_b SES surface, 48751 of
    4660 76920 triangles, 6q97_A-site.pdb_c SES surface, 32791 of 63158 triangles,
    4661 6q97_A-site.pdb_e SES surface, 87953 of 88192 triangles, 6q97_A-site.pdb_f SES
    4662 surface, 47342 of 47780 triangles 
    4663 
    4664 > select clear
    4665 
    4666 Drag select of 6q97_A-site.pdb_1 SES surface, 5745337 of 7969538 triangles,
    4667 6q97_A-site.pdb_3 SES surface, 347412 of 350468 triangles, 6q97_A-site.pdb_6
    4668 SES surface, 6q97_A-site.pdb_B SES surface, 11669 of 295732 triangles, 6q97_A-
    4669 site.pdb_C SES surface, 231252 of 231886 triangles, 6q97_A-site.pdb_D SES
    4670 surface, 6q97_A-site.pdb_E SES surface, 43547 of 190010 triangles, 6q97_A-
    4671 site.pdb_F SES surface, 177443 of 189188 triangles, 6q97_A-site.pdb_G SES
    4672 surface, 17706 of 168232 triangles, 6q97_A-site.pdb_H SES surface, 149625 of
    4673 153748 triangles, 6q97_A-site.pdb_I SES surface, 852 of 172054 triangles,
    4674 6q97_A-site.pdb_J SES surface, 6q97_A-site.pdb_K SES surface, 14745 of 121150
    4675 triangles, 6q97_A-site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface,
    4676 150835 of 152098 triangles, 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_O
    4677 SES surface, 6q97_A-site.pdb_P SES surface, 36599 of 137720 triangles, 6q97_A-
    4678 site.pdb_Q SES surface, 6q97_A-site.pdb_R SES surface, 6q97_A-site.pdb_S SES
    4679 surface, 6q97_A-site.pdb_T SES surface, 6q97_A-site.pdb_U SES surface, 6q97_A-
    4680 site.pdb_V SES surface, 6q97_A-site.pdb_W SES surface, 6q97_A-site.pdb_X SES
    4681 surface, 80746 of 94844 triangles, 6q97_A-site.pdb_Y SES surface, 6q97_A-
    4682 site.pdb_Z SES surface, 6q97_A-site.pdb_a SES surface, 4589 of 93508
    4683 triangles, 6q97_A-site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 60719
    4684 of 63158 triangles, 6q97_A-site.pdb_d SES surface, 6q97_A-site.pdb_e SES
    4685 surface, 6q97_A-site.pdb_f SES surface 
    4686 Drag select of 6q97_A-site.pdb_1 SES surface, 5112671 of 7969538 triangles,
    4687 6q97_A-site.pdb_3 SES surface, 325566 of 350468 triangles, 6q97_A-site.pdb_6
    4688 SES surface, 33592 of 33600 triangles, 6q97_A-site.pdb_C SES surface, 218667
    4689 of 231886 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_E SES
    4690 surface, 7764 of 190010 triangles, 6q97_A-site.pdb_F SES surface, 154218 of
    4691 189188 triangles, 6q97_A-site.pdb_G SES surface, 2376 of 168232 triangles,
    4692 6q97_A-site.pdb_H SES surface, 123307 of 153748 triangles, 6q97_A-site.pdb_J
    4693 SES surface, 6q97_A-site.pdb_K SES surface, 151 of 121150 triangles, 6q97_A-
    4694 site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 126780 of 152098
    4695 triangles, 6q97_A-site.pdb_N SES surface, 124728 of 127082 triangles, 6q97_A-
    4696 site.pdb_O SES surface, 6q97_A-site.pdb_P SES surface, 20532 of 137720
    4697 triangles, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES surface,
    4698 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES surface, 6q97_A-
    4699 site.pdb_U SES surface, 6q97_A-site.pdb_V SES surface, 6q97_A-site.pdb_W SES
    4700 surface, 84108 of 84440 triangles, 6q97_A-site.pdb_X SES surface, 48836 of
    4701 94844 triangles, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface,
    4702 6q97_A-site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 43501 of 63158
    4703 triangles, 6q97_A-site.pdb_d SES surface, 68376 of 68556 triangles, 6q97_A-
    4704 site.pdb_e SES surface, 6q97_A-site.pdb_f SES surface, 46169 of 47780
    4705 triangles 
    4706 
    4707 > select clear
    4708 
    4709 > show #!1 models
    4710 
    4711 > hide #!1 models
    4712 
    4713 > show #!4 models
    4714 
    4715 > hide #!2 models
    4716 
    4717 > show #!1 models
    4718 
    4719 > show #!3 models
    4720 
    4721 > show #!5 models
    4722 
    4723 > show #!6 models
    4724 
    4725 > show #!7 models
    4726 
    4727 > show #!8 models
    4728 
    4729 > show #!9 models
    4730 
    4731 > show #!10 models
    4732 
    4733 > view
    4734 
    4735 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4736 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4737 
    4738 > hide #!1 models
    4739 
    4740 > hide #!3 models
    4741 
    4742 > hide #!4 models
    4743 
    4744 > hide #!5 models
    4745 
    4746 > hide #!7 models
    4747 
    4748 > hide #!8 models
    4749 
    4750 > hide #!9 models
    4751 
    4752 > hide #!10 models
    4753 
    4754 > show #!8 models
    4755 
    4756 > hide #!6 models
    4757 
    4758 > show #!6 models
    4759 
    4760 > hide #!8 models
    4761 
    4762 > lighting flat
    4763 
    4764 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4765 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4766 
    4767 > set bgColor white
    4768 
    4769 > save C:\Users\claud\Desktop\image1.png supersample 3
    4770 
    4771 > preset "overall look" publication
    4772 
    4773 Preset expands to these ChimeraX commands:
    4774 
    4775    
    4776    
    4777     set bg white
    4778     graphics silhouettes t
    4779 
    4780  
    4781 
    4782 > show #!7 models
    4783 
    4784 > hide #!6 models
    4785 
    4786 > save C:\Users\claud\Desktop\image2.png supersample 3
    4787 
    4788 > show #!8 models
    4789 
    4790 > hide #!7 models
    4791 
    4792 > save C:\Users\claud\Desktop\image3.png supersample 3
    4793 
    4794 > show #!9 models
    4795 
    4796 > hide #!8 models
    4797 
    4798 > save C:\Users\claud\Desktop\image4.png supersample 3
    4799 
    4800 > show #!10 models
    4801 
    4802 > hide #!9 models
    4803 
    4804 > save C:\Users\claud\Desktop\image5.png supersample 3
    4805 
    4806 > hide #!10 models
    4807 
    4808 > show #!9 models
    4809 
    4810 > hide #!9 models
    4811 
    4812 > show #!1 models
    4813 
    4814 > show #!6 models
    4815 
    4816 > hide #!6 models
    4817 
    4818 > ui tool show "Side View"
    4819 
    4820 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4821 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4822 
    4823 opened ChimeraX session 
    4824 
    4825 > show #!10 models
    4826 
    4827 > hide #!1 models
    4828 
    4829 > open C:\Users\claud\Downloads\6q9a-pdb-bundle.tar\6q9a_PastP-site.pdb format
    4830 > pdb
    4831 
    4832 Summary of feedback from opening C:\Users\claud\Downloads\6q9a-pdb-
    4833 bundle.tar\6q9a_PastP-site.pdb 
    4834 --- 
    4835 warning | Ignored bad PDB record found on line 156504 
    4836 END 
    4837  
    4838 Chain information for 6q9a_PastP-site.pdb #11 
    4839 --- 
    4840 Chain | Description 
    4841 1 | No description available 
    4842 2 | No description available 
    4843 3 | No description available 
    4844 4 | No description available 
    4845 5 | No description available 
    4846 6 | No description available 
    4847 7 | No description available 
    4848 B | No description available 
    4849 C | No description available 
    4850 D | No description available 
    4851 E | No description available 
    4852 F | No description available 
    4853 G | No description available 
    4854 H | No description available 
    4855 I | No description available 
    4856 J | No description available 
    4857 K | No description available 
    4858 L | No description available 
    4859 M | No description available 
    4860 N | No description available 
    4861 O | No description available 
    4862 P | No description available 
    4863 Q | No description available 
    4864 R | No description available 
    4865 S | No description available 
    4866 T | No description available 
    4867 U | No description available 
    4868 V | No description available 
    4869 W | No description available 
    4870 X | No description available 
    4871 Y | No description available 
    4872 Z | No description available 
    4873 a | No description available 
    4874 b | No description available 
    4875 c | No description available 
    4876 d | No description available 
    4877 e | No description available 
    4878 f | No description available 
    4879 g | No description available 
    4880 h | No description available 
    4881 i | No description available 
    4882 j | No description available 
    4883 k | No description available 
    4884 l | No description available 
    4885 m | No description available 
    4886 n | No description available 
    4887 o | No description available 
    4888 p | No description available 
    4889 q | No description available 
    4890 r | No description available 
    4891 s | No description available 
    4892 t | No description available 
    4893 u | No description available 
    4894 v | No description available 
    4895 w | No description available 
    4896 x | No description available 
    4897 y | No description available 
    4898 z | No description available 
    4899  
    4900 
    4901 > select #11/7:21@N3
    4902 
    4903 1 atom, 1 residue, 1 model selected 
    4904 
    4905 > select clear
    4906 
    4907 > hide #!10 models
    4908 
    4909 > show #!10 models
    4910 
    4911 > hide #!10 models
    4912 
    4913 > select #11/4:188@N1
    4914 
    4915 1 atom, 1 residue, 1 model selected 
    4916 
    4917 > select up
    4918 
    4919 51 atoms, 52 bonds, 3 residues, 1 model selected 
    4920 
    4921 > select up
    4922 
    4923 9452 atoms, 10564 bonds, 448 residues, 1 model selected 
    4924 
    4925 > select up
    4926 
    4927 10323 atoms, 11449 bonds, 561 residues, 1 model selected 
    4928 
    4929 > select ~sel
    4930 
    4931 922354 atoms, 999996 bonds, 14 pseudobonds, 68504 residues, 40 models selected 
    4932 
    4933 > ~select #10
    4934 
    4935 913656 atoms, 990357 bonds, 14 pseudobonds, 68023 residues, 330 models
    4936 selected 
    4937 
    4938 > ~select #9
    4939 
    4940 904688 atoms, 980445 bonds, 14 pseudobonds, 67509 residues, 327 models
    4941 selected 
    4942 
    4943 > ~select #8
    4944 
    4945 889705 atoms, 964310 bonds, 10 pseudobonds, 66309 residues, 323 models
    4946 selected 
    4947 
    4948 > ~select #7
    4949 
    4950 877986 atoms, 951333 bonds, 8 pseudobonds, 65665 residues, 317 models selected 
    4951 
    4952 > ~select #6
    4953 
    4954 869098 atoms, 941821 bonds, 4 pseudobonds, 64919 residues, 310 models selected 
    4955 
    4956 > ~select #5
    4957 
    4958 722627 atoms, 783230 bonds, 4 pseudobonds, 53871 residues, 303 models selected 
    4959 
    4960 > ~select #4
    4961 
    4962 577717 atoms, 626383 bonds, 2 pseudobonds, 42900 residues, 245 models selected 
    4963 
    4964 > ~select #3
    4965 
    4966 435181 atoms, 471504 bonds, 32622 residues, 188 models selected 
    4967 
    4968 > ~select #2
    4969 
    4970 290163 atoms, 314539 bonds, 21642 residues, 135 models selected 
    4971 
    4972 > ~select #1
    4973 
    4974 144846 atoms, 156781 bonds, 10968 residues, 55 models selected 
    4975 
    4976 > delete atoms sel
    4977 
    4978 > delete bonds sel
    4979 
    4980 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    4981 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    4982 
    4983 > show #!10 models
    4984 
    4985 > hide #!10 models
    4986 
    4987 > show #!10 models
    4988 
    4989 > hide #!10 models
    4990 
    4991 > hide #10.1 models
    4992 
    4993 > hide #11 models
    4994 
    4995 > show #10.1 models
    4996 
    4997 > hide #!10.2 models
    4998 
    4999 > show #!10.2 models
    5000 
    5001 > hide #10.2.1 models
    5002 
    5003 > show #10.2.1 models
    5004 
    5005 > hide #10.2.1 models
    5006 
    5007 > show #10.2.1 models
    5008 
    5009 > hide #10.2.1 models
    5010 
    5011 > show #10.2.1 models
    5012 
    5013 > hide #10.1 models
    5014 
    5015 > show #10.1 models
    5016 
    5017 > hide #10.1 models
    5018 
    5019 > show #10.1 models
    5020 
    5021 > close #10
    5022 
    5023 > show #11 models
    5024 
    5025 > hide #11 atoms
    5026 
    5027 > show #11 surfaces
    5028 
    5029 > show #!6 models
    5030 
    5031 > hide #!6 models
    5032 
    5033 > select #11/4:131@C4'
    5034 
    5035 1 atom, 1 residue, 1 model selected 
    5036 
    5037 > select up
    5038 
    5039 20 atoms, 21 bonds, 1 residue, 2 models selected 
    5040 
    5041 > select up
    5042 
    5043 7758 atoms, 8681 bonds, 363 residues, 2 models selected 
    5044 
    5045 > ui tool show "Color Actions"
    5046 
    5047 > color sel royal blue
    5048 
    5049 > color sel royal blue
    5050 
    5051 > select up
    5052 
    5053 10323 atoms, 11449 bonds, 561 residues, 2 models selected 
    5054 
    5055 > select down
    5056 
    5057 7758 atoms, 8681 bonds, 363 residues, 4 models selected 
    5058 
    5059 > ui tool show "Color Actions"
    5060 
    5061 > color sel royal blue
    5062 
    5063 > color sel royal blue
    5064 
    5065 > color sel royal blue
    5066 
    5067 > select #11/5:103@CB
    5068 
    5069 1 atom, 1 residue, 1 model selected 
    5070 
    5071 > select clear
    5072 
    5073 > select #11/5:103@CD
    5074 
    5075 1 atom, 1 residue, 1 model selected 
    5076 
    5077 > select up
    5078 
    5079 11 atoms, 10 bonds, 1 residue, 2 models selected 
    5080 
    5081 > select up
    5082 
    5083 73 atoms, 73 bonds, 9 residues, 2 models selected 
    5084 
    5085 > select up
    5086 
    5087 940 atoms, 958 bonds, 118 residues, 2 models selected 
    5088 
    5089 > color sel medium purple
    5090 
    5091 > select up
    5092 
    5093 1621 atoms, 76 residues, 3 models selected 
    5094 
    5095 > select up
    5096 
    5097 1625 atoms, 1810 bonds, 80 residues, 3 models selected 
    5098 
    5099 > select up
    5100 
    5101 1625 atoms, 1810 bonds, 80 residues, 3 models selected 
    5102 
    5103 > select up
    5104 
    5105 10323 atoms, 11449 bonds, 561 residues, 3 models selected 
    5106 
    5107 > select down
    5108 
    5109 1625 atoms, 1810 bonds, 80 residues, 5 models selected 
    5110 Drag select of 6q9a_PastP-site.pdb_7 SES surface, 86570 of 226010 triangles,
    5111 cap near, 4241 of 6899 triangles 
    5112 Drag select of 6q9a_PastP-site.pdb_7 SES surface, 111705 of 226010 triangles,
    5113 cap near, 5620 of 6899 triangles 
    5114 
    5115 > select up
    5116 
    5117 10323 atoms, 11449 bonds, 561 residues, 3 models selected 
    5118 
    5119 > select down
    5120 
    5121 1625 atoms, 1810 bonds, 80 residues, 5 models selected 
    5122 
    5123 > color sel medium violet red
    5124 
    5125 > color sel dark olive green
    5126 
    5127 > color sel dark magenta
    5128 
    5129 > color sel pale violet red
    5130 
    5131 > select clear
    5132 
    5133 Drag select of 6q9a_PastP-site.pdb_4 SES surface, 175321 of 1159708 triangles,
    5134 cap near, 3860 of 9464 triangles 
    5135 
    5136 > select up
    5137 
    5138 2561 atoms, 194 residues, 5 models selected 
    5139 
    5140 > select down
    5141 
    5142 1 model selected 
    5143 
    5144 > color sel royal blue
    5145 
    5146 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    5147 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl.cxs"
    5148 
    5149 > select clear
    5150 
    5151 > hide #!11 models
    5152 
    5153 > show #!2 models
    5154 
    5155 Drag select of 6q97_A-site.pdb_1 SES surface, 5194422 of 7969538 triangles,
    5156 cap near, 25617 of 35589 triangles, 6q97_A-site.pdb_3 SES surface, 8442 of
    5157 350468 triangles, cap near, 6q97_A-site.pdb_6 SES surface, 6q97_A-site.pdb_B
    5158 SES surface, 44796 of 295732 triangles, 6q97_A-site.pdb_C SES surface, 229471
    5159 of 231886 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_F SES
    5160 surface, 88137 of 189188 triangles, cap near, 3222 of 4048 triangles, 6q97_A-
    5161 site.pdb_G SES surface, 28860 of 168232 triangles, 6q97_A-site.pdb_J SES
    5162 surface, 6q97_A-site.pdb_K SES surface, 10835 of 121150 triangles, 6q97_A-
    5163 site.pdb_L SES surface, 125520 of 188938 triangles, cap near, 6q97_A-
    5164 site.pdb_M SES surface, 35549 of 152098 triangles, cap near, 3719 of 4663
    5165 triangles, 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_P SES surface, 45549
    5166 of 137720 triangles, 6q97_A-site.pdb_Q SES surface, 132694 of 143740
    5167 triangles, cap near, 6q97_A-site.pdb_R SES surface, 117339 of 126390
    5168 triangles, cap near, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES
    5169 surface, 6q97_A-site.pdb_U SES surface, 6q97_A-site.pdb_W SES surface, 7810 of
    5170 84440 triangles, cap near, 6q97_A-site.pdb_X SES surface, 6q97_A-site.pdb_Y
    5171 SES surface, 6q97_A-site.pdb_Z SES surface, 3047 of 64594 triangles, cap near,
    5172 6q97_A-site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 411 of 63158
    5173 triangles, cap near, 6q97_A-site.pdb_d SES surface, 6q97_A-site.pdb_e SES
    5174 surface, 41006 of 88192 triangles, cap near, 6q97_A-site.pdb_f SES surface,
    5175 36052 of 47780 triangles, cap near, 438 of 740 triangles 
    5176 
    5177 > select up
    5178 
    5179 57566 atoms, 4665 residues, 69 models selected 
    5180 
    5181 > select clear
    5182 
    5183 Drag select of 6q97_A-site.pdb_1 SES surface, 2840895 of 7969538 triangles,
    5184 cap near, 15095 of 35589 triangles, 6q97_A-site.pdb_3 SES surface, 4517 of
    5185 350468 triangles, cap near, 1423 of 2070 triangles, 6q97_A-site.pdb_6 SES
    5186 surface, 20741 of 33600 triangles, 6q97_A-site.pdb_C SES surface, 86112 of
    5187 231886 triangles, 6q97_A-site.pdb_D SES surface, 235444 of 235976 triangles,
    5188 6q97_A-site.pdb_F SES surface, 7094 of 189188 triangles, cap near, 708 of 4048
    5189 triangles, 6q97_A-site.pdb_J SES surface, 144449 of 151320 triangles, 6q97_A-
    5190 site.pdb_L SES surface, 123987 of 188938 triangles, cap near, 4629 of 4769
    5191 triangles, 6q97_A-site.pdb_N SES surface, 69000 of 127082 triangles, 6q97_A-
    5192 site.pdb_Q SES surface, 132694 of 143740 triangles, cap near, 6q97_A-
    5193 site.pdb_R SES surface, 117339 of 126390 triangles, cap near, 6q97_A-
    5194 site.pdb_S SES surface, 121473 of 122990 triangles, 6q97_A-site.pdb_T SES
    5195 surface, 6q97_A-site.pdb_U SES surface, 6q97_A-site.pdb_X SES surface, 1252 of
    5196 94844 triangles, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface,
    5197 3047 of 64594 triangles, cap near, 6q97_A-site.pdb_b SES surface, 6q97_A-
    5198 site.pdb_d SES surface, 45763 of 68556 triangles, 6q97_A-site.pdb_e SES
    5199 surface, 38859 of 88192 triangles, cap near, 2322 of 2973 triangles 
    5200 
    5201 > select up
    5202 
    5203 64997 atoms, 5622 residues, 65 models selected 
    5204 
    5205 > select down
    5206 
    5207 8 models selected 
    5208 
    5209 > select down
    5210 
    5211 8 models selected 
    5212 
    5213 > select clear
    5214 
    5215 > show #!4 models
    5216 
    5217 > hide #!4 models
    5218 
    5219 > show #!4 models
    5220 
    5221 > hide #!4 models
    5222 
    5223 > show #!7 models
    5224 
    5225 > hide #!2 models
    5226 
    5227 > ui tool show "Side View"
    5228 
    5229 > show #!6 models
    5230 
    5231 > hide #!7 models
    5232 
    5233 > show #!7 models
    5234 
    5235 > hide #!6 models
    5236 
    5237 > hide #!7 models
    5238 
    5239 > show #!8 models
    5240 
    5241 > hide #!8 models
    5242 
    5243 > show #!9 models
    5244 
    5245 > hide #!9 models
    5246 
    5247 > show #!11 models
    5248 
    5249 > show #!6 models
    5250 
    5251 > hide #!11 models
    5252 
    5253 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    5254 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    5255 
    5256 > hide #!6 models
    5257 
    5258 > show #!2 models
    5259 
    5260 Drag select of 6q97_A-site.pdb_1 SES surface, 5392686 of 7969538 triangles,
    5261 6q97_A-site.pdb_3 SES surface, 270034 of 350468 triangles, 6q97_A-site.pdb_6
    5262 SES surface, 33403 of 33600 triangles, 6q97_A-site.pdb_B SES surface, 10826 of
    5263 295732 triangles, 6q97_A-site.pdb_C SES surface, 210304 of 231886 triangles,
    5264 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_F SES surface, 103825 of 189188
    5265 triangles, 6q97_A-site.pdb_G SES surface, 29150 of 168232 triangles, 6q97_A-
    5266 site.pdb_H SES surface, 13463 of 153748 triangles, 6q97_A-site.pdb_J SES
    5267 surface, 6q97_A-site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 72913
    5268 of 152098 triangles, 6q97_A-site.pdb_N SES surface, 6q97_A-site.pdb_O SES
    5269 surface, 119925 of 121204 triangles, 6q97_A-site.pdb_P SES surface, 13996 of
    5270 137720 triangles, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES
    5271 surface, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES surface, 6q97_A-
    5272 site.pdb_U SES surface, 6q97_A-site.pdb_V SES surface, 6q97_A-site.pdb_W SES
    5273 surface, 82105 of 84440 triangles, 6q97_A-site.pdb_X SES surface, 94404 of
    5274 94844 triangles, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES surface,
    5275 6q97_A-site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 47309 of 63158
    5276 triangles, 6q97_A-site.pdb_d SES surface, 6q97_A-site.pdb_e SES surface,
    5277 6q97_A-site.pdb_f SES surface, 17333 of 47780 triangles 
    5278 
    5279 > select up
    5280 
    5281 55895 atoms, 4449 residues, 57 models selected 
    5282 
    5283 > select down
    5284 
    5285 Nothing selected 
    5286 
    5287 > hide #2.1 models
    5288 
    5289 > show #2.1 models
    5290 
    5291 > ~select #2.1
    5292 
    5293 Nothing selected 
    5294 
    5295 > select #2.2
    5296 
    5297 62336 atoms, 2903 residues, 2 models selected 
    5298 
    5299 > select #2.3
    5300 
    5301 32929 atoms, 1534 residues, 2 models selected 
    5302 
    5303 > select #2.2
    5304 
    5305 62336 atoms, 2903 residues, 2 models selected 
    5306 
    5307 > close #2
    5308 
    5309 > open C:\Users\claud\Downloads\6q97-pdb-bundle.tar\6q97_A-site.pdb format pdb
    5310 
    5311 Summary of feedback from opening C:\Users\claud\Downloads\6q97-pdb-
    5312 bundle.tar\6q97_A-site.pdb 
    5313 --- 
    5314 warning | Ignored bad PDB record found on line 157976 
    5315 END 
    5316  
    5317 Chain information for 6q97_A-site.pdb #2 
    5318 --- 
    5319 Chain | Description 
    5320 1 | No description available 
    5321 2 | No description available 
    5322 3 | No description available 
    5323 4 | No description available 
    5324 5 | No description available 
    5325 6 | No description available 
    5326 7 | No description available 
    5327 8 | No description available 
    5328 9 | No description available 
    5329 B | No description available 
    5330 C | No description available 
    5331 D | No description available 
    5332 E | No description available 
    5333 F | No description available 
    5334 G | No description available 
    5335 H | No description available 
    5336 I | No description available 
    5337 J | No description available 
    5338 K | No description available 
    5339 L | No description available 
    5340 M | No description available 
    5341 N | No description available 
    5342 O | No description available 
    5343 P | No description available 
    5344 Q | No description available 
    5345 R | No description available 
    5346 S | No description available 
    5347 T | No description available 
    5348 U | No description available 
    5349 V | No description available 
    5350 W | No description available 
    5351 X | No description available 
    5352 Y | No description available 
    5353 Z | No description available 
    5354 a | No description available 
    5355 b | No description available 
    5356 c | No description available 
    5357 d | No description available 
    5358 e | No description available 
    5359 f | No description available 
    5360 g | No description available 
    5361 h | No description available 
    5362 i | No description available 
    5363 j | No description available 
    5364 k | No description available 
    5365 l | No description available 
    5366 m | No description available 
    5367 n | No description available 
    5368 o | No description available 
    5369 p | No description available 
    5370 q | No description available 
    5371 r | No description available 
    5372 s | No description available 
    5373 t | No description available 
    5374 u | No description available 
    5375 v | No description available 
    5376 w | No description available 
    5377 x | No description available 
    5378 y | No description available 
    5379 z | No description available 
    5380  
    5381 
    5382 > select #2/4:227@O2'
    5383 
    5384 1 atom, 1 residue, 1 model selected 
    5385 
    5386 > select clear
    5387 
    5388 > select #2/4:204@P
    5389 
    5390 1 atom, 1 residue, 1 model selected 
    5391 
    5392 > select up
    5393 
    5394 73 atoms, 77 bonds, 4 residues, 1 model selected 
    5395 
    5396 > select up
    5397 
    5398 10771 atoms, 12004 bonds, 535 residues, 1 model selected 
    5399 
    5400 > select up
    5401 
    5402 11591 atoms, 12835 bonds, 638 residues, 1 model selected 
    5403 
    5404 > delete atoms sel
    5405 
    5406 > delete bonds sel
    5407 
    5408 > select #2/6:28@CB
    5409 
    5410 1 atom, 1 residue, 1 model selected 
    5411 
    5412 > select up
    5413 
    5414 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5415 
    5416 > select up
    5417 
    5418 140 atoms, 139 bonds, 28 residues, 1 model selected 
    5419 
    5420 > select up
    5421 
    5422 2 atoms, 1 bond, 2 residues, 1 model selected 
    5423 
    5424 > select up
    5425 
    5426 42 atoms, 46 bonds, 2 residues, 1 model selected 
    5427 
    5428 > select up
    5429 
    5430 128 atoms, 142 bonds, 6 residues, 1 model selected 
    5431 
    5432 > delete atoms sel
    5433 
    5434 > delete bonds sel
    5435 
    5436 > show #!2 surfaces
    5437 
    5438 Drag select of 6q97_A-site.pdb_1 SES surface, 5687128 of 7969538 triangles,
    5439 6q97_A-site.pdb_3 SES surface, 305764 of 350468 triangles, 6q97_A-site.pdb_6
    5440 SES surface, 33398 of 33600 triangles, 6q97_A-site.pdb_B SES surface, 123308
    5441 of 295732 triangles, 6q97_A-site.pdb_C SES surface, 115332 of 231886
    5442 triangles, 6q97_A-site.pdb_D SES surface, 6q97_A-site.pdb_F SES surface, 11217
    5443 of 189188 triangles, 6q97_A-site.pdb_G SES surface, 148479 of 168232
    5444 triangles, 6q97_A-site.pdb_J SES surface, 150771 of 151320 triangles, 6q97_A-
    5445 site.pdb_L SES surface, 6q97_A-site.pdb_M SES surface, 42789 of 152098
    5446 triangles, 6q97_A-site.pdb_N SES surface, 113890 of 127082 triangles, 6q97_A-
    5447 site.pdb_O SES surface, 6q97_A-site.pdb_Q SES surface, 6q97_A-site.pdb_R SES
    5448 surface, 6q97_A-site.pdb_S SES surface, 6q97_A-site.pdb_T SES surface, 6q97_A-
    5449 site.pdb_U SES surface, 6q97_A-site.pdb_V SES surface, 78227 of 101454
    5450 triangles, 6q97_A-site.pdb_W SES surface, 83574 of 84440 triangles, 6q97_A-
    5451 site.pdb_X SES surface, 6q97_A-site.pdb_Y SES surface, 6q97_A-site.pdb_Z SES
    5452 surface, 6q97_A-site.pdb_a SES surface, 4902 of 93508 triangles, 6q97_A-
    5453 site.pdb_b SES surface, 6q97_A-site.pdb_c SES surface, 6q97_A-site.pdb_d SES
    5454 surface, 6q97_A-site.pdb_e SES surface, 63644 atoms 
    5455 
    5456 > select up
    5457 
    5458 66271 atoms, 72006 bonds, 4732 residues, 29 models selected 
    5459 
    5460 > select up
    5461 
    5462 84356 atoms, 92158 bonds, 5726 residues, 29 models selected 
    5463 
    5464 > hide sel atoms
    5465 
    5466 > select up
    5467 
    5468 87321 atoms, 95095 bonds, 6186 residues, 29 models selected 
    5469 
    5470 > select up
    5471 
    5472 144890 atoms, 156823 bonds, 10974 residues, 29 models selected 
    5473 
    5474 > select down
    5475 
    5476 87321 atoms, 95095 bonds, 6186 residues, 56 models selected 
    5477 
    5478 > select up
    5479 
    5480 87350 atoms, 95121 bonds, 6190 residues, 33 models selected 
    5481 
    5482 > select up
    5483 
    5484 87619 atoms, 95396 bonds, 6225 residues, 33 models selected 
    5485 
    5486 > select up
    5487 
    5488 91148 atoms, 98970 bonds, 6688 residues, 33 models selected 
    5489 
    5490 > select up
    5491 
    5492 144890 atoms, 156823 bonds, 10974 residues, 33 models selected 
    5493 
    5494 > select down
    5495 
    5496 91148 atoms, 98970 bonds, 6688 residues, 56 models selected 
    5497 
    5498 > select up
    5499 
    5500 91156 atoms, 98977 bonds, 6689 residues, 34 models selected 
    5501 
    5502 > select up
    5503 
    5504 91252 atoms, 99073 bonds, 6701 residues, 34 models selected 
    5505 
    5506 > select up
    5507 
    5508 91446 atoms, 99268 bonds, 6726 residues, 34 models selected 
    5509 
    5510 > color sel dark gray
    5511 
    5512 > select up
    5513 
    5514 91455 atoms, 99276 bonds, 6727 residues, 35 models selected 
    5515 
    5516 > select up
    5517 
    5518 91531 atoms, 99355 bonds, 6735 residues, 35 models selected 
    5519 
    5520 > select up
    5521 
    5522 92857 atoms, 100703 bonds, 6903 residues, 35 models selected 
    5523 
    5524 > color sel dark gray
    5525 
    5526 > select ~sel
    5527 
    5528 686148 atoms, 744180 bonds, 14 pseudobonds, 50707 residues, 66 models selected 
    5529 
    5530 > ~select #1
    5531 
    5532 540831 atoms, 586422 bonds, 14 pseudobonds, 40033 residues, 300 models
    5533 selected 
    5534 
    5535 > ~select #3
    5536 
    5537 398295 atoms, 431543 bonds, 12 pseudobonds, 29755 residues, 244 models
    5538 selected 
    5539 
    5540 > ~select #4
    5541 
    5542 253385 atoms, 274696 bonds, 10 pseudobonds, 18784 residues, 172 models
    5543 selected 
    5544 
    5545 > ~select #5
    5546 
    5547 106914 atoms, 116105 bonds, 10 pseudobonds, 7736 residues, 116 models selected 
    5548 
    5549 > ~select #6
    5550 
    5551 98026 atoms, 106593 bonds, 6 pseudobonds, 6990 residues, 54 models selected 
    5552 
    5553 > ~select #7
    5554 
    5555 86307 atoms, 93616 bonds, 4 pseudobonds, 6346 residues, 42 models selected 
    5556 
    5557 > ~select #8
    5558 
    5559 71324 atoms, 77481 bonds, 5146 residues, 35 models selected 
    5560 
    5561 > ~select #9
    5562 
    5563 62356 atoms, 67569 bonds, 4632 residues, 30 models selected 
    5564 
    5565 > ~select #11
    5566 
    5567 52033 atoms, 56120 bonds, 4071 residues, 25 models selected 
    5568 
    5569 > color sel lemon chiffon
    5570 
    5571 > select clear
    5572 
    5573 > lighting flat
    5574 
    5575 > lighting simple
    5576 
    5577 > lighting soft
    5578 
    5579 > lighting full
    5580 
    5581 > lighting flat
    5582 
    5583 > lighting soft
    5584 
    5585 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    5586 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    5587 
    5588 > hide #!2 models
    5589 
    5590 > open C:\Users\claud\Downloads\6q97-pdb-bundle.tar\6q97_A-site.pdb format pdb
    5591 
    5592 Summary of feedback from opening C:\Users\claud\Downloads\6q97-pdb-
    5593 bundle.tar\6q97_A-site.pdb 
    5594 --- 
    5595 warning | Ignored bad PDB record found on line 157976 
    5596 END 
    5597  
    5598 Chain information for 6q97_A-site.pdb #10 
    5599 --- 
    5600 Chain | Description 
    5601 1 | No description available 
    5602 2 | No description available 
    5603 3 | No description available 
    5604 4 | No description available 
    5605 5 | No description available 
    5606 6 | No description available 
    5607 7 | No description available 
    5608 8 | No description available 
    5609 9 | No description available 
    5610 B | No description available 
    5611 C | No description available 
    5612 D | No description available 
    5613 E | No description available 
    5614 F | No description available 
    5615 G | No description available 
    5616 H | No description available 
    5617 I | No description available 
    5618 J | No description available 
    5619 K | No description available 
    5620 L | No description available 
    5621 M | No description available 
    5622 N | No description available 
    5623 O | No description available 
    5624 P | No description available 
    5625 Q | No description available 
    5626 R | No description available 
    5627 S | No description available 
    5628 T | No description available 
    5629 U | No description available 
    5630 V | No description available 
    5631 W | No description available 
    5632 X | No description available 
    5633 Y | No description available 
    5634 Z | No description available 
    5635 a | No description available 
    5636 b | No description available 
    5637 c | No description available 
    5638 d | No description available 
    5639 e | No description available 
    5640 f | No description available 
    5641 g | No description available 
    5642 h | No description available 
    5643 i | No description available 
    5644 j | No description available 
    5645 k | No description available 
    5646 l | No description available 
    5647 m | No description available 
    5648 n | No description available 
    5649 o | No description available 
    5650 p | No description available 
    5651 q | No description available 
    5652 r | No description available 
    5653 s | No description available 
    5654 t | No description available 
    5655 u | No description available 
    5656 v | No description available 
    5657 w | No description available 
    5658 x | No description available 
    5659 y | No description available 
    5660 z | No description available 
    5661  
    5662 
    5663 > show #!10 cartoons
    5664 
    5665 > hide #!10 atoms
    5666 
    5667 > select #10/6:28
    5668 
    5669 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5670 
    5671 > select up
    5672 
    5673 140 atoms, 139 bonds, 28 residues, 1 model selected 
    5674 
    5675 > select up
    5676 
    5677 156609 atoms, 169800 bonds, 11618 residues, 1 model selected 
    5678 
    5679 > select down
    5680 
    5681 140 atoms, 139 bonds, 28 residues, 1 model selected 
    5682 
    5683 > select ~sel
    5684 
    5685 935474 atoms, 1014544 bonds, 16 pseudobonds, 69200 residues, 68 models
    5686 selected 
    5687 
    5688 > ~select #1
    5689 
    5690 790157 atoms, 856786 bonds, 16 pseudobonds, 58526 residues, 336 models
    5691 selected 
    5692 
    5693 > ~select #2
    5694 
    5695 645267 atoms, 699963 bonds, 16 pseudobonds, 47552 residues, 281 models
    5696 selected 
    5697 
    5698 > ~select #3
    5699 
    5700 502731 atoms, 545084 bonds, 14 pseudobonds, 37274 residues, 224 models
    5701 selected 
    5702 
    5703 > ~select #4
    5704 
    5705 357821 atoms, 388237 bonds, 12 pseudobonds, 26303 residues, 152 models
    5706 selected 
    5707 
    5708 > ~select #5
    5709 
    5710 211350 atoms, 229646 bonds, 12 pseudobonds, 15255 residues, 96 models selected 
    5711 
    5712 > ~select #6
    5713 
    5714 202462 atoms, 220134 bonds, 8 pseudobonds, 14509 residues, 34 models selected 
    5715 
    5716 > ~select #7
    5717 
    5718 190743 atoms, 207157 bonds, 6 pseudobonds, 13865 residues, 22 models selected 
    5719 
    5720 > ~select #8
    5721 
    5722 175760 atoms, 191022 bonds, 2 pseudobonds, 12665 residues, 15 models selected 
    5723 
    5724 > ~select #9
    5725 
    5726 166792 atoms, 181110 bonds, 2 pseudobonds, 12151 residues, 10 models selected 
    5727 
    5728 > ~select #11
    5729 
    5730 156469 atoms, 169661 bonds, 2 pseudobonds, 11590 residues, 5 models selected 
    5731 
    5732 > show #!11 models
    5733 
    5734 > hide #!11 models
    5735 
    5736 > delete atoms (#!10 & sel)
    5737 
    5738 > delete bonds (#!10 & sel)
    5739 
    5740 > show #!7 models
    5741 
    5742 > hide #!10 models
    5743 
    5744 > show #!10 models
    5745 
    5746 > hide #!7 models
    5747 
    5748 > show #!10 surfaces
    5749 
    5750 > hide #!10 cartoons
    5751 
    5752 > select #10
    5753 
    5754 140 atoms, 139 bonds, 28 residues, 1 model selected 
    5755 
    5756 > ui tool show "Color Actions"
    5757 
    5758 > color sel steel blue
    5759 
    5760 > color sel sandy brown
    5761 
    5762 > color sel maroon
    5763 
    5764 > color sel fire brick
    5765 
    5766 > color sel brown
    5767 
    5768 > color sel dark red
    5769 
    5770 > color sel brown
    5771 
    5772 > color sel crimson
    5773 
    5774 > show #!7 models
    5775 
    5776 > color sel maroon
    5777 
    5778 > color sel fire brick
    5779 
    5780 > color sel peru
    5781 
    5782 > color sel salmon
    5783 
    5784 > color sel indian red
    5785 
    5786 > color sel dark salmon
    5787 
    5788 > color sel salmon
    5789 
    5790 > color sel brown
    5791 
    5792 > color sel steel blue
    5793 
    5794 > color sel cadet blue
    5795 
    5796 > color sel blue
    5797 
    5798 > color sel orange red
    5799 
    5800 > color sel crimson
    5801 
    5802 > color sel dark red
    5803 
    5804 > color sel fire brick
    5805 
    5806 > color sel chocolate
    5807 
    5808 > color sel maroon
    5809 
    5810 > color sel fire brick
    5811 
    5812 > select clear
    5813 
    5814 > hide #!10 models
    5815 
    5816 > hide #!7 models
    5817 
    5818 > open C:\Users\claud\Downloads\4v8q-pdb-bundle.tar\4v8q-pdb-
    5819 > bundle\4v8q_withEF-Tu.pdb format pdb
    5820 
    5821 Summary of feedback from opening C:\Users\claud\Downloads\4v8q-pdb-
    5822 bundle.tar\4v8q-pdb-bundle\4v8q_withEF-Tu.pdb 
    5823 --- 
    5824 warning | Ignored bad PDB record found on line 155403 
    5825 END 
    5826  
    5827 Chain information for 4v8q_withEF-Tu.pdb #12 
    5828 --- 
    5829 Chain | Description 
    5830 0 | No description available 
    5831 1 | No description available 
    5832 2 | No description available 
    5833 3 4 | No description available 
    5834 5 | No description available 
    5835 6 | No description available 
    5836 7 | No description available 
    5837 A | No description available 
    5838 B | No description available 
    5839 C | No description available 
    5840 D | No description available 
    5841 E | No description available 
    5842 F | No description available 
    5843 G | No description available 
    5844 H | No description available 
    5845 I | No description available 
    5846 J | No description available 
    5847 K | No description available 
    5848 L | No description available 
    5849 M | No description available 
    5850 N | No description available 
    5851 O | No description available 
    5852 P | No description available 
    5853 Q | No description available 
    5854 R | No description available 
    5855 S | No description available 
    5856 T | No description available 
    5857 U | No description available 
    5858 V | No description available 
    5859 W | No description available 
    5860 X | No description available 
    5861 Y | No description available 
    5862 Z | No description available 
    5863 a | No description available 
    5864 b | No description available 
    5865 c | No description available 
    5866 d | No description available 
    5867 e | No description available 
    5868 f | No description available 
    5869 g | No description available 
    5870 h | No description available 
    5871 i | No description available 
    5872 j | No description available 
    5873 k | No description available 
    5874 l | No description available 
    5875 m | No description available 
    5876 n | No description available 
    5877 o | No description available 
    5878 p | No description available 
    5879 q | No description available 
    5880 r | No description available 
    5881 s | No description available 
    5882 t | No description available 
    5883 u | No description available 
    5884 v | No description available 
    5885 w | No description available 
    5886 x | No description available 
    5887 y | No description available 
    5888 z | No description available 
    5889  
    5890 
    5891 > show #!12 cartoons
    5892 
    5893 > hide #!12 atoms
    5894 
    5895 > close #12
    5896 
    5897 > show #!11 models
    5898 
    5899 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    5900 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    5901 
    5902 opened ChimeraX session 
    5903 
    5904 > show #!6 models
    5905 
    5906 > hide #!11 models
    5907 
    5908 > lighting flat
    5909 
    5910 > show #!7 models
    5911 
    5912 > show #!8 models
    5913 
    5914 > hide #!7 models
    5915 
    5916 > hide #!6 models
    5917 
    5918 > show #!9 models
    5919 
    5920 > hide #!8 models
    5921 
    5922 > ui tool show "Side View"
    5923 
    5924 > view orient
    5925 
    5926 > set depthCue 0
    5927 
    5928 Expected a keyword 
    5929 
    5930 > set depthCue false
    5931 
    5932 Expected a keyword 
    5933 
    5934 > set depthCue, false
    5935 
    5936 Expected a keyword 
    5937 
    5938 > depthCue false
    5939 
    5940 Unknown command: depthCue false 
    5941 
    5942 > lightning
    5943 
    5944 Unknown command: lightning 
    5945 
    5946 > lighting
    5947 
    5948 Intensity: 0 
    5949 Direction: 0.577,-0.577,-0.577 
    5950 Color: 100,100,100 
    5951 Fill intensity: 0 
    5952 Fill direction: -0.2,-0.2,-0.959 
    5953 Fill color: 100,100,100 
    5954 Ambient intensity: 1.45 
    5955 Ambient color: 100,100,100 
    5956 Depth cue: 1, start 0.5, end 1, color 100,100,100 
    5957 Shadow: False (depth map size 2048, depth bias 0.005) 
    5958 Multishadows: 0 (max 1024, depth map size 1024, depth bias 0.01) 
    5959 
    5960 > lighting depthCue false
    5961 
    5962 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    5963 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    5964 
    5965 > show #!1 models
    5966 
    5967 > hide #!1 models
    5968 
    5969 > show #!6 models
    5970 
    5971 > hide #!9 models
    5972 
    5973 > select #6/h:91@CA
    5974 
    5975 1 atom, 1 residue, 1 model selected 
    5976 
    5977 > select up
    5978 
    5979 4 atoms, 3 bonds, 1 residue, 2 models selected 
    5980 
    5981 > select up
    5982 
    5983 112 atoms, 112 bonds, 13 residues, 2 models selected 
    5984 
    5985 > select up
    5986 
    5987 1184 atoms, 1203 bonds, 144 residues, 2 models selected 
    5988 
    5989 > ui tool show "Color Actions"
    5990 
    5991 > color sel medium violet red
    5992 
    5993 > color sel dark orchid
    5994 
    5995 > color sel dark magenta
    5996 
    5997 > color sel purple
    5998 
    5999 > color sel medium purple
    6000 
    6001 > color sel pale violet red
    6002 
    6003 > color sel medium orchid
    6004 
    6005 > color sel dark violet
    6006 
    6007 > color sel blue violet
    6008 
    6009 > color sel medium orchid
    6010 
    6011 > color sel medium violet red
    6012 
    6013 > select #6/6:56@C4'
    6014 
    6015 1 atom, 1 residue, 1 model selected 
    6016 
    6017 > select up
    6018 
    6019 20 atoms, 21 bonds, 1 residue, 2 models selected 
    6020 
    6021 > select up
    6022 
    6023 1305 atoms, 1454 bonds, 62 residues, 2 models selected 
    6024 
    6025 > color sel cornflower blue
    6026 
    6027 > color sel deep sky blue
    6028 
    6029 > color sel royal blue
    6030 
    6031 > color sel dodger blue
    6032 
    6033 > color sel cornflower blue
    6034 
    6035 > color sel royal blue
    6036 
    6037 > select clear
    6038 
    6039 > hide #!6 models
    6040 
    6041 > show #!7 models
    6042 
    6043 > select #7/5:103@CD
    6044 
    6045 1 atom, 1 residue, 1 model selected 
    6046 
    6047 > select up
    6048 
    6049 11 atoms, 10 bonds, 1 residue, 2 models selected 
    6050 
    6051 > select up
    6052 
    6053 34 atoms, 34 bonds, 4 residues, 2 models selected 
    6054 
    6055 > select up
    6056 
    6057 1170 atoms, 1191 bonds, 145 residues, 2 models selected 
    6058 
    6059 > color sel medium violet red
    6060 
    6061 > select clear
    6062 
    6063 > hide #!7 models
    6064 
    6065 > show #!8 models
    6066 
    6067 > select #8/W:88@CB
    6068 
    6069 1 atom, 1 residue, 1 model selected 
    6070 
    6071 > select up
    6072 
    6073 11 atoms, 10 bonds, 1 residue, 2 models selected 
    6074 
    6075 > select up
    6076 
    6077 78 atoms, 78 bonds, 9 residues, 2 models selected 
    6078 
    6079 > select up
    6080 
    6081 993 atoms, 1011 bonds, 122 residues, 2 models selected 
    6082 
    6083 > color sel medium violet red
    6084 
    6085 > select #8/Y:646@CE1
    6086 
    6087 1 atom, 1 residue, 1 model selected 
    6088 
    6089 > select #8/Y:641@CD
    6090 
    6091 1 atom, 1 residue, 1 model selected 
    6092 
    6093 > select clear
    6094 
    6095 > select #8/Y:634@SD
    6096 
    6097 1 atom, 1 residue, 1 model selected 
    6098 
    6099 > select up
    6100 
    6101 8 atoms, 7 bonds, 1 residue, 2 models selected 
    6102 
    6103 > select up
    6104 
    6105 52 atoms, 52 bonds, 7 residues, 2 models selected 
    6106 
    6107 > select up
    6108 
    6109 5215 atoms, 5313 bonds, 667 residues, 2 models selected 
    6110 
    6111 > color sel light slate gray
    6112 
    6113 > color sel cadet blue
    6114 
    6115 > color sel steel blue
    6116 
    6117 > color sel cadet blue
    6118 
    6119 > color sel cornflower blue
    6120 
    6121 > color sel cyan
    6122 
    6123 > color sel pale turquoise
    6124 
    6125 > color sel medium turquoise
    6126 
    6127 > color sel turquoise
    6128 
    6129 > color sel medium turquoise
    6130 
    6131 > color sel medium aquamarine
    6132 
    6133 > color sel medium turquoise
    6134 
    6135 > color sel turquoise
    6136 
    6137 > color sel medium turquoise
    6138 
    6139 > color sel light sea green
    6140 
    6141 > color sel medium turquoise
    6142 
    6143 > color sel medium aquamarine
    6144 
    6145 > color sel light sea green
    6146 
    6147 > color sel medium aquamarine
    6148 
    6149 > color sel aquamarine
    6150 
    6151 > color sel turquoise
    6152 
    6153 > color sel light sea green
    6154 
    6155 > color sel medium spring green
    6156 
    6157 > color sel teal
    6158 
    6159 > color sel cadet blue
    6160 
    6161 > color sel teal
    6162 
    6163 > color sel aquamarine
    6164 
    6165 > color sel light green
    6166 
    6167 > color sel pale green
    6168 
    6169 > color sel dark sea green
    6170 
    6171 > color sel pale violet red
    6172 
    6173 > color sel thistle
    6174 
    6175 > color sel powder blue
    6176 
    6177 > color sel light steel blue
    6178 
    6179 > color sel sea green
    6180 
    6181 > color sel medium sea green
    6182 
    6183 > color sel fire brick
    6184 
    6185 > color sel dark red
    6186 
    6187 > color sel cornflower blue
    6188 
    6189 > color sel dodger blue
    6190 
    6191 > color sel steel blue
    6192 
    6193 > color sel medium purple
    6194 
    6195 > color sel medium orchid
    6196 
    6197 > color sel blue violet
    6198 
    6199 > color sel slate blue
    6200 
    6201 > color sel dark slate blue
    6202 
    6203 > color sel rebecca purple
    6204 
    6205 > color sel magenta
    6206 
    6207 > color sel deep pink
    6208 
    6209 > color sel pale violet red
    6210 
    6211 > color sel midnight blue
    6212 
    6213 > color sel light coral
    6214 
    6215 > color sel rosy brown
    6216 
    6217 > color sel dark gray
    6218 
    6219 > color sel rosy brown
    6220 
    6221 > color sel gray
    6222 
    6223 > color sel medium aquamarine
    6224 
    6225 > color sel medium turquoise
    6226 
    6227 > color sel medium aquamarine
    6228 
    6229 > color sel turquoise
    6230 
    6231 > color sel medium aquamarine
    6232 
    6233 > color sel aquamarine
    6234 
    6235 > color sel light sea green
    6236 
    6237 > color sel aquamarine
    6238 
    6239 > color sel medium aquamarine
    6240 
    6241 > color sel light sea green
    6242 
    6243 > color sel medium aquamarine
    6244 
    6245 > color sel light sea green
    6246 
    6247 > color sel teal
    6248 
    6249 > color sel medium aquamarine
    6250 
    6251 > color sel dark cyan
    6252 
    6253 > color sel teal
    6254 
    6255 > color sel medium aquamarine
    6256 
    6257 > color sel aquamarine
    6258 
    6259 > color sel medium aquamarine
    6260 
    6261 > color sel plum
    6262 
    6263 > color sel medium aquamarine
    6264 
    6265 > color sel hot pink
    6266 
    6267 > color sel violet
    6268 
    6269 > color sel plum
    6270 
    6271 > color sel light pink
    6272 
    6273 > color sel medium aquamarine
    6274 
    6275 > select clear
    6276 
    6277 > show #!9 models
    6278 
    6279 > hide #!8 models
    6280 
    6281 > select #9/5:28@CD
    6282 
    6283 1 atom, 1 residue, 1 model selected 
    6284 
    6285 > select up
    6286 
    6287 9 atoms, 8 bonds, 1 residue, 2 models selected 
    6288 
    6289 > select up
    6290 
    6291 151 atoms, 153 bonds, 18 residues, 2 models selected 
    6292 
    6293 > select up
    6294 
    6295 1209 atoms, 1231 bonds, 150 residues, 2 models selected 
    6296 
    6297 > color sel medium violet red
    6298 
    6299 > select clear
    6300 
    6301 > show #!10 models
    6302 
    6303 > hide #!10 models
    6304 
    6305 > show #!10 models
    6306 
    6307 > hide #!10 models
    6308 
    6309 > show #!10 models
    6310 
    6311 > hide #!9 models
    6312 
    6313 > hide #!10 models
    6314 
    6315 > show #!10 models
    6316 
    6317 > select clear
    6318 
    6319 > show #!9 models
    6320 
    6321 > hide #!10 models
    6322 
    6323 > show #!10 models
    6324 
    6325 > show #!11 models
    6326 
    6327 > hide #!11 models
    6328 
    6329 > show #!11 models
    6330 
    6331 > hide #!11 models
    6332 
    6333 > hide #!9 models
    6334 
    6335 > show #!9 models
    6336 
    6337 > hide #!10 models
    6338 
    6339 > hide #!9 models
    6340 
    6341 > show #!11 models
    6342 
    6343 > select #11/5:66@CA
    6344 
    6345 1 atom, 1 residue, 1 model selected 
    6346 
    6347 > select up
    6348 
    6349 11 atoms, 11 bonds, 1 residue, 2 models selected 
    6350 
    6351 > select up
    6352 
    6353 375 atoms, 380 bonds, 49 residues, 2 models selected 
    6354 
    6355 > select up
    6356 
    6357 940 atoms, 958 bonds, 118 residues, 2 models selected 
    6358 
    6359 > color sel medium violet red
    6360 
    6361 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    6362 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    6363 
    6364 > select clear
    6365 
    6366 > set bgColor black
    6367 
    6368 > open C:\Users\claud\Downloads\4v6t-pdb-bundle.tar\4v6t_withEF-G.pdb format
    6369 > pdb
    6370 
    6371 Summary of feedback from opening C:\Users\claud\Downloads\4v6t-pdb-
    6372 bundle.tar\4v6t_withEF-G.pdb 
    6373 --- 
    6374 warning | Ignored bad PDB record found on line 158154 
    6375 END 
    6376  
    6377 Chain information for 4v6t_withEF-G.pdb #12 
    6378 --- 
    6379 Chain | Description 
    6380 0 | No description available 
    6381 1 | No description available 
    6382 2 | No description available 
    6383 3 | No description available 
    6384 A | No description available 
    6385 B | No description available 
    6386 C | No description available 
    6387 D | No description available 
    6388 E | No description available 
    6389 F | No description available 
    6390 G | No description available 
    6391 H | No description available 
    6392 I | No description available 
    6393 J | No description available 
    6394 K | No description available 
    6395 L | No description available 
    6396 M | No description available 
    6397 N | No description available 
    6398 O | No description available 
    6399 P | No description available 
    6400 Q | No description available 
    6401 R | No description available 
    6402 S | No description available 
    6403 T | No description available 
    6404 U | No description available 
    6405 V | No description available 
    6406 W | No description available 
    6407 X | No description available 
    6408 Y | No description available 
    6409 Z | No description available 
    6410 a | No description available 
    6411 b | No description available 
    6412 c | No description available 
    6413 d | No description available 
    6414 e | No description available 
    6415 f | No description available 
    6416 g | No description available 
    6417 h | No description available 
    6418 i | No description available 
    6419 j | No description available 
    6420 k | No description available 
    6421 l | No description available 
    6422 m | No description available 
    6423 n | No description available 
    6424 o | No description available 
    6425 p | No description available 
    6426 q | No description available 
    6427 r | No description available 
    6428 s | No description available 
    6429 t | No description available 
    6430 u | No description available 
    6431 v | No description available 
    6432 w | No description available 
    6433 x | No description available 
    6434 y | No description available 
    6435 z | No description available 
    6436  
    6437 
    6438 > hide #!11 models
    6439 
    6440 > show #!12 cartoons
    6441 
    6442 > hide #!12 atoms
    6443 
    6444 > close #12
    6445 
    6446 > open C:\Users\claud\Downloads\6q98-pdb-bundle.tar\6q98_P-site.pdb format pdb
    6447 
    6448 Summary of feedback from opening C:\Users\claud\Downloads\6q98-pdb-
    6449 bundle.tar\6q98_P-site.pdb 
    6450 --- 
    6451 warning | Ignored bad PDB record found on line 155175 
    6452 END 
    6453  
    6454 Chain information for 6q98_P-site.pdb #12 
    6455 --- 
    6456 Chain | Description 
    6457 1 | No description available 
    6458 2 | No description available 
    6459 3 | No description available 
    6460 4 | No description available 
    6461 5 | No description available 
    6462 6 | No description available 
    6463 B | No description available 
    6464 C | No description available 
    6465 D | No description available 
    6466 E | No description available 
    6467 F | No description available 
    6468 G | No description available 
    6469 H | No description available 
    6470 I | No description available 
    6471 J | No description available 
    6472 K | No description available 
    6473 L | No description available 
    6474 M | No description available 
    6475 N | No description available 
    6476 O | No description available 
    6477 P | No description available 
    6478 Q | No description available 
    6479 R | No description available 
    6480 S | No description available 
    6481 T | No description available 
    6482 U | No description available 
    6483 V | No description available 
    6484 W | No description available 
    6485 X | No description available 
    6486 Y | No description available 
    6487 Z | No description available 
    6488 a | No description available 
    6489 b | No description available 
    6490 c | No description available 
    6491 d | No description available 
    6492 e | No description available 
    6493 f | No description available 
    6494 g | No description available 
    6495 h | No description available 
    6496 i | No description available 
    6497 j | No description available 
    6498 k | No description available 
    6499 l | No description available 
    6500 m | No description available 
    6501 n | No description available 
    6502 o | No description available 
    6503 p | No description available 
    6504 q | No description available 
    6505 r | No description available 
    6506 s | No description available 
    6507 t | No description available 
    6508 u | No description available 
    6509 v | No description available 
    6510 w | No description available 
    6511 x | No description available 
    6512 y | No description available 
    6513 z | No description available 
    6514  
    6515 
    6516 > show #!12 cartoons
    6517 
    6518 > hide #!12 atoms
    6519 
    6520 > select clear
    6521 
    6522 > select clear
    6523 
    6524 > select clear
    6525 
    6526 Drag select of 19 residues 
    6527 
    6528 > select clear
    6529 
    6530 > select #12/6:21
    6531 
    6532 5 atoms, 4 bonds, 1 residue, 1 model selected 
    6533 
    6534 > select up
    6535 
    6536 40 atoms, 39 bonds, 8 residues, 1 model selected 
    6537 
    6538 > select up
    6539 
    6540 110 atoms, 109 bonds, 22 residues, 1 model selected 
    6541 
    6542 > select ~sel
    6543 
    6544 932913 atoms, 1011672 bonds, 16 pseudobonds, 69101 residues, 18 models
    6545 selected 
    6546 
    6547 > ~select #11
    6548 
    6549 922590 atoms, 1000223 bonds, 16 pseudobonds, 68540 residues, 310 models
    6550 selected 
    6551 
    6552 > ~select #10
    6553 
    6554 922450 atoms, 1000084 bonds, 16 pseudobonds, 68512 residues, 306 models
    6555 selected 
    6556 
    6557 > ~select #9
    6558 
    6559 913482 atoms, 990172 bonds, 16 pseudobonds, 67998 residues, 304 models
    6560 selected 
    6561 
    6562 > ~select #8
    6563 
    6564 898499 atoms, 974037 bonds, 12 pseudobonds, 66798 residues, 300 models
    6565 selected 
    6566 
    6567 > ~select #7
    6568 
    6569 886780 atoms, 961060 bonds, 10 pseudobonds, 66154 residues, 294 models
    6570 selected 
    6571 
    6572 > ~select #6
    6573 
    6574 877892 atoms, 951548 bonds, 6 pseudobonds, 65408 residues, 287 models selected 
    6575 
    6576 > ~select #5
    6577 
    6578 731421 atoms, 792957 bonds, 6 pseudobonds, 54360 residues, 280 models selected 
    6579 
    6580 > ~select #4
    6581 
    6582 586511 atoms, 636110 bonds, 4 pseudobonds, 43389 residues, 222 models selected 
    6583 
    6584 > ~select #3
    6585 
    6586 443975 atoms, 481231 bonds, 2 pseudobonds, 33111 residues, 165 models selected 
    6587 
    6588 > ~select #2
    6589 
    6590 299085 atoms, 324408 bonds, 2 pseudobonds, 22137 residues, 112 models selected 
    6591 
    6592 > ~select #1
    6593 
    6594 153768 atoms, 166650 bonds, 2 pseudobonds, 11463 residues, 56 models selected 
    6595 
    6596 > delete atoms (#!12 & sel)
    6597 
    6598 > delete bonds (#!12 & sel)
    6599 
    6600 > show #!12 surfaces
    6601 
    6602 > hide #!12 cartoons
    6603 
    6604 > show #!10 models
    6605 
    6606 > hide #!10 models
    6607 
    6608 > show #!10 models
    6609 
    6610 > show #!7 models
    6611 
    6612 > hide #!7 models
    6613 
    6614 > hide #!10 models
    6615 
    6616 > show #!10 models
    6617 
    6618 > hide #!10 models
    6619 
    6620 > show #!10 models
    6621 
    6622 > hide #!10 models
    6623 
    6624 > hide #!12 models
    6625 
    6626 > open C:\Users\claud\Downloads\6q9a-pdb-bundle.tar\6q9a_PastP-site.pdb format
    6627 > pdb
    6628 
    6629 Summary of feedback from opening C:\Users\claud\Downloads\6q9a-pdb-
    6630 bundle.tar\6q9a_PastP-site.pdb 
    6631 --- 
    6632 warning | Ignored bad PDB record found on line 156504 
    6633 END 
    6634  
    6635 Chain information for 6q9a_PastP-site.pdb #13 
    6636 --- 
    6637 Chain | Description 
    6638 1 | No description available 
    6639 2 | No description available 
    6640 3 | No description available 
    6641 4 | No description available 
    6642 5 | No description available 
    6643 6 | No description available 
    6644 7 | No description available 
    6645 B | No description available 
    6646 C | No description available 
    6647 D | No description available 
    6648 E | No description available 
    6649 F | No description available 
    6650 G | No description available 
    6651 H | No description available 
    6652 I | No description available 
    6653 J | No description available 
    6654 K | No description available 
    6655 L | No description available 
    6656 M | No description available 
    6657 N | No description available 
    6658 O | No description available 
    6659 P | No description available 
    6660 Q | No description available 
    6661 R | No description available 
    6662 S | No description available 
    6663 T | No description available 
    6664 U | No description available 
    6665 V | No description available 
    6666 W | No description available 
    6667 X | No description available 
    6668 Y | No description available 
    6669 Z | No description available 
    6670 a | No description available 
    6671 b | No description available 
    6672 c | No description available 
    6673 d | No description available 
    6674 e | No description available 
    6675 f | No description available 
    6676 g | No description available 
    6677 h | No description available 
    6678 i | No description available 
    6679 j | No description available 
    6680 k | No description available 
    6681 l | No description available 
    6682 m | No description available 
    6683 n | No description available 
    6684 o | No description available 
    6685 p | No description available 
    6686 q | No description available 
    6687 r | No description available 
    6688 s | No description available 
    6689 t | No description available 
    6690 u | No description available 
    6691 v | No description available 
    6692 w | No description available 
    6693 x | No description available 
    6694 y | No description available 
    6695 z | No description available 
    6696  
    6697 
    6698 > show #13 cartoons
    6699 
    6700 > hide #13 atoms
    6701 
    6702 > select clear
    6703 
    6704 > select #13/6:12
    6705 
    6706 5 atoms, 4 bonds, 1 residue, 1 model selected 
    6707 Drag select of 2 residues 
    6708 
    6709 > select up
    6710 
    6711 115 atoms, 114 bonds, 23 residues, 1 model selected 
    6712 
    6713 > select ~sel
    6714 
    6715 934309 atoms, 1013247 bonds, 14 pseudobonds, 69166 residues, 18 models
    6716 selected 
    6717 
    6718 > ~select #1
    6719 
    6720 788992 atoms, 855489 bonds, 14 pseudobonds, 58492 residues, 311 models
    6721 selected 
    6722 
    6723 > ~select #2
    6724 
    6725 644102 atoms, 698666 bonds, 14 pseudobonds, 47518 residues, 256 models
    6726 selected 
    6727 
    6728 > ~select #3
    6729 
    6730 501566 atoms, 543787 bonds, 12 pseudobonds, 37240 residues, 199 models
    6731 selected 
    6732 
    6733 > ~select #4
    6734 
    6735 356656 atoms, 386940 bonds, 10 pseudobonds, 26269 residues, 145 models
    6736 selected 
    6737 
    6738 > ~select #5
    6739 
    6740 210185 atoms, 228349 bonds, 10 pseudobonds, 15221 residues, 89 models selected 
    6741 
    6742 > ~select #6
    6743 
    6744 201297 atoms, 218837 bonds, 6 pseudobonds, 14475 residues, 31 models selected 
    6745 
    6746 > ~select #7
    6747 
    6748 189578 atoms, 205860 bonds, 4 pseudobonds, 13831 residues, 23 models selected 
    6749 
    6750 > ~select #8
    6751 
    6752 174595 atoms, 189725 bonds, 12631 residues, 16 models selected 
    6753 
    6754 > ~select #9
    6755 
    6756 165627 atoms, 179813 bonds, 12117 residues, 11 models selected 
    6757 
    6758 > ~select #10
    6759 
    6760 165487 atoms, 179674 bonds, 12089 residues, 8 models selected 
    6761 
    6762 > ~select #11
    6763 
    6764 155164 atoms, 168225 bonds, 11528 residues, 6 models selected 
    6765 
    6766 > ~select #12
    6767 
    6768 155054 atoms, 168116 bonds, 11506 residues, 2 models selected 
    6769 
    6770 > delete atoms sel
    6771 
    6772 > delete bonds sel
    6773 
    6774 > show #13 surfaces
    6775 
    6776 > hide #!13 cartoons
    6777 
    6778 > show #!10 models
    6779 
    6780 > show #!11 models
    6781 
    6782 > hide #!11 models
    6783 
    6784 > show #!12 models
    6785 
    6786 > hide #!12 models
    6787 
    6788 > hide #!13 models
    6789 
    6790 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    6791 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    6792 
    6793 > hide #!10 models
    6794 
    6795 > show #!5 models
    6796 
    6797 > show #!11 models
    6798 
    6799 > hide #!11 models
    6800 
    6801 > hide #!5 models
    6802 
    6803 > show #!3 models
    6804 
    6805 > show #!8 models
    6806 
    6807 > hide #!3 models
    6808 
    6809 > hide #!8 models
    6810 
    6811 > show #!2 models
    6812 
    6813 > show #!7 models
    6814 
    6815 > hide #!2 models
    6816 
    6817 > show #!10 models
    6818 
    6819 > hide #!10 models
    6820 
    6821 > hide #!7 models
    6822 
    6823 > show #!9 models
    6824 
    6825 > hide #!9 models
    6826 
    6827 > show #!7 models
    6828 
    6829 > hide #!7 models
    6830 
    6831 > show #!8 models
    6832 
    6833 > hide #!8 cartoons
    6834 
    6835 > hide #!8 models
    6836 
    6837 > show #!7 models
    6838 
    6839 > hide #!7 cartoons
    6840 
    6841 > show #!9 models
    6842 
    6843 > hide #!7 models
    6844 
    6845 > show #!11 models
    6846 
    6847 > hide #!9 models
    6848 
    6849 > view name 1
    6850 
    6851 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    6852 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    6853 
    6854 > set bgColor gray
    6855 
    6856 > set bgColor white
    6857 
    6858 > lighting flat
    6859 
    6860 > lighting soft
    6861 
    6862 > lighting flat
    6863 
    6864 > lighting simple
    6865 
    6866 > lighting flat
    6867 
    6868 > lighting depthCue false
    6869 
    6870 > hide #!11 models
    6871 
    6872 > show #!6 models
    6873 
    6874 > save C:\Users\claud\Desktop\image1.png supersample 3
    6875 
    6876 > hide #!6 models
    6877 
    6878 > show #!7 models
    6879 
    6880 > save C:\Users\claud\Desktop\image2.png supersample 3
    6881 
    6882 > hide #!7 models
    6883 
    6884 > show #!8 models
    6885 
    6886 > show #!8 cartoons
    6887 
    6888 > save C:\Users\claud\Desktop\image3.png supersample 3
    6889 
    6890 > hide #!8 models
    6891 
    6892 > show #!9 models
    6893 
    6894 > save C:\Users\claud\Desktop\image4.png supersample 3
    6895 
    6896 > show #!11 models
    6897 
    6898 > hide #!9 models
    6899 
    6900 > save C:\Users\claud\Desktop\image5.png supersample 3
    6901 
    6902 > hide #!11 models
    6903 
    6904 > show #!1 models
    6905 
    6906 > ui tool show "Side View"
    6907 
    6908 > view name 2
    6909 
    6910 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    6911 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    6912 
    6913 ——— End of log from Tue Nov 3 01:00:53 2020 ———
    6914 
    6915 opened ChimeraX session 
    6916 
    6917 > hide #!1 models
    6918 
    6919 > show #!6 models
    6920 
    6921 > view 1
    6922 
    6923 > select #6/h:18@CD
    6924 
    6925 1 atom, 1 residue, 1 model selected 
    6926 
    6927 > select add #6/6:55@C4'
    6928 
    6929 2 atoms, 2 residues, 2 models selected 
    6930 
    6931 > select add #6/7:161@CE1
    6932 
    6933 3 atoms, 3 residues, 3 models selected 
    6934 
    6935 > select up
    6936 
    6937 41 atoms, 41 bonds, 3 residues, 4 models selected 
    6938 
    6939 > select up
    6940 
    6941 1503 atoms, 1653 bonds, 85 residues, 4 models selected 
    6942 
    6943 > select up
    6944 
    6945 5504 atoms, 5732 bonds, 587 residues, 4 models selected 
    6946 
    6947 > hide sel surfaces
    6948 
    6949 > save C:\Users\claud\Desktop\image1.png supersample 3
    6950 
    6951 > select clear
    6952 
    6953 > hide #!6 models
    6954 
    6955 > show #!5 models
    6956 
    6957 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 5428922 of 7584890
    6958 triangles, cap far, 29474 of 36557 triangles, 6q9a_PastP-site.pdb_3 SES
    6959 surface, 263333 of 336264 triangles, 6q9a_PastP-site.pdb_6 SES surface,
    6960 6q9a_PastP-site.pdb_7 SES surface, 22494 of 226010 triangles, 6q9a_PastP-
    6961 site.pdb_B SES surface, 114388 of 284462 triangles, 6q9a_PastP-site.pdb_C SES
    6962 surface, 171663 of 210654 triangles, cap far, 7323 of 7385 triangles,
    6963 6q9a_PastP-site.pdb_D SES surface, 6q9a_PastP-site.pdb_F SES surface, 114241
    6964 of 170510 triangles, 6q9a_PastP-site.pdb_G SES surface, 99083 of 159078
    6965 triangles, 6q9a_PastP-site.pdb_H SES surface, 15565 of 151294 triangles,
    6966 6q9a_PastP-site.pdb_J SES surface, 6q9a_PastP-site.pdb_K SES surface, 17582 of
    6967 118336 triangles, cap far, 575 of 1992 triangles, 6q9a_PastP-site.pdb_L SES
    6968 surface, 6q9a_PastP-site.pdb_M SES surface, 95953 of 143600 triangles,
    6969 6q9a_PastP-site.pdb_N SES surface, 34054 of 117956 triangles, cap far,
    6970 6q9a_PastP-site.pdb_O SES surface, 110407 of 110652 triangles, 6q9a_PastP-
    6971 site.pdb_P SES surface, 455 of 126368 triangles, cap far, 229 of 2807
    6972 triangles, 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES
    6973 surface, 6q9a_PastP-site.pdb_S SES surface, 6q9a_PastP-site.pdb_T SES surface,
    6974 76306 of 106536 triangles, cap far, 6q9a_PastP-site.pdb_U SES surface,
    6975 6q9a_PastP-site.pdb_V SES surface, 6q9a_PastP-site.pdb_W SES surface,
    6976 6q9a_PastP-site.pdb_X SES surface, 6q9a_PastP-site.pdb_Y SES surface, 71798 of
    6977 71820 triangles, cap far, 6q9a_PastP-site.pdb_Z SES surface, 6q9a_PastP-
    6978 site.pdb_b SES surface, 48327 of 76322 triangles, cap far, 6q9a_PastP-
    6979 site.pdb_c SES surface, 53700 of 58266 triangles, 6q9a_PastP-site.pdb_d SES
    6980 surface, 6q9a_PastP-site.pdb_e SES surface, 6q9a_PastP-site.pdb_f SES surface,
    6981 27813 of 43520 triangles 
    6982 
    6983 > select add #5/I:101@OG
    6984 
    6985 1 atom, 1 residue, 41 models selected 
    6986 
    6987 > select clear
    6988 
    6989 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 3540558 of 7584890
    6990 triangles, cap far, 14504 of 36557 triangles, 6q9a_PastP-site.pdb_3 SES
    6991 surface, 73633 of 336264 triangles, 6q9a_PastP-site.pdb_6 SES surface, 20041
    6992 of 27260 triangles, 6q9a_PastP-site.pdb_C SES surface, 88387 of 210654
    6993 triangles, cap far, 3455 of 7385 triangles, 6q9a_PastP-site.pdb_D SES surface,
    6994 6q9a_PastP-site.pdb_F SES surface, 21126 of 170510 triangles, 6q9a_PastP-
    6995 site.pdb_G SES surface, 12726 of 159078 triangles, 6q9a_PastP-site.pdb_J SES
    6996 surface, 133212 of 140984 triangles, 6q9a_PastP-site.pdb_L SES surface,
    6997 6q9a_PastP-site.pdb_M SES surface, 55 of 143600 triangles, 6q9a_PastP-
    6998 site.pdb_N SES surface, 28261 of 117956 triangles, cap far, 3823 of 4257
    6999 triangles, 6q9a_PastP-site.pdb_O SES surface, 31759 of 110652 triangles,
    7000 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES surface,
    7001 6q9a_PastP-site.pdb_S SES surface, 6q9a_PastP-site.pdb_T SES surface, 76306 of
    7002 106536 triangles, cap far, 6q9a_PastP-site.pdb_U SES surface, 6q9a_PastP-
    7003 site.pdb_V SES surface, 36442 of 94850 triangles, 6q9a_PastP-site.pdb_W SES
    7004 surface, 40639 of 81572 triangles, 6q9a_PastP-site.pdb_X SES surface, 46872 of
    7005 88272 triangles, 6q9a_PastP-site.pdb_Y SES surface, 71798 of 71820 triangles,
    7006 cap far, 6q9a_PastP-site.pdb_Z SES surface, 6q9a_PastP-site.pdb_b SES surface,
    7007 48327 of 76322 triangles, cap far, 6q9a_PastP-site.pdb_c SES surface, 6504 of
    7008 58266 triangles, 6q9a_PastP-site.pdb_d SES surface, 58374 of 61184 triangles,
    7009 6q9a_PastP-site.pdb_e SES surface, 69733 of 81712 triangles 
    7010 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 3352002 of 7584890
    7011 triangles, cap far, 13089 of 36557 triangles, 6q9a_PastP-site.pdb_3 SES
    7012 surface, 52914 of 336264 triangles, 6q9a_PastP-site.pdb_6 SES surface, 18418
    7013 of 27260 triangles, 6q9a_PastP-site.pdb_C SES surface, 70699 of 210654
    7014 triangles, cap far, 2887 of 7385 triangles, 6q9a_PastP-site.pdb_D SES surface,
    7015 6q9a_PastP-site.pdb_F SES surface, 15385 of 170510 triangles, 6q9a_PastP-
    7016 site.pdb_G SES surface, 7679 of 159078 triangles, 6q9a_PastP-site.pdb_J SES
    7017 surface, 124808 of 140984 triangles, 6q9a_PastP-site.pdb_L SES surface,
    7018 6q9a_PastP-site.pdb_N SES surface, 22949 of 117956 triangles, cap far, 3168 of
    7019 4257 triangles, 6q9a_PastP-site.pdb_O SES surface, 23823 of 110652 triangles,
    7020 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES surface,
    7021 6q9a_PastP-site.pdb_S SES surface, 110512 of 110722 triangles, 6q9a_PastP-
    7022 site.pdb_T SES surface, 76306 of 106536 triangles, cap far, 6q9a_PastP-
    7023 site.pdb_U SES surface, 6q9a_PastP-site.pdb_V SES surface, 27394 of 94850
    7024 triangles, 6q9a_PastP-site.pdb_W SES surface, 33955 of 81572 triangles,
    7025 6q9a_PastP-site.pdb_X SES surface, 35351 of 88272 triangles, 6q9a_PastP-
    7026 site.pdb_Y SES surface, 71798 of 71820 triangles, cap far, 6q9a_PastP-
    7027 site.pdb_Z SES surface, 6q9a_PastP-site.pdb_b SES surface, 48327 of 76322
    7028 triangles, cap far, 6q9a_PastP-site.pdb_c SES surface, 3849 of 58266
    7029 triangles, 6q9a_PastP-site.pdb_d SES surface, 54729 of 61184 triangles,
    7030 6q9a_PastP-site.pdb_e SES surface, 65898 of 81712 triangles 
    7031 
    7032 > select clear
    7033 
    7034 Drag select of 6q9a_PastP-site.pdb_2 SES surface, 487961 of 4032392 triangles,
    7035 cap far, 208 of 25181 triangles, 6q9a_PastP-site.pdb_g SES surface, 172529 of
    7036 207704 triangles, 6q9a_PastP-site.pdb_h SES surface, 183310 of 210806
    7037 triangles, 6q9a_PastP-site.pdb_i SES surface, 112004 of 212800 triangles, cap
    7038 far, 4339 of 5430 triangles, 6q9a_PastP-site.pdb_j SES surface, 55665 of
    7039 145330 triangles, cap far, 715 of 1019 triangles, 6q9a_PastP-site.pdb_m SES
    7040 surface, 4979 of 123032 triangles, 6q9a_PastP-site.pdb_n SES surface, 75138 of
    7041 138712 triangles, 6q9a_PastP-site.pdb_o SES surface, 99656 of 118120
    7042 triangles, 6q9a_PastP-site.pdb_s SES surface, 59610 of 127050 triangles,
    7043 6q9a_PastP-site.pdb_z SES surface, 1371 of 108134 triangles 
    7044 
    7045 > select clear
    7046 
    7047 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 3682828 of 7584890
    7048 triangles, cap far, 15570 of 36557 triangles, 6q9a_PastP-site.pdb_3 SES
    7049 surface, 89401 of 336264 triangles, 6q9a_PastP-site.pdb_6 SES surface, 21336
    7050 of 27260 triangles, 6q9a_PastP-site.pdb_C SES surface, 100087 of 210654
    7051 triangles, cap far, 3903 of 7385 triangles, 6q9a_PastP-site.pdb_D SES surface,
    7052 6q9a_PastP-site.pdb_F SES surface, 12300 of 170510 triangles, 6q9a_PastP-
    7053 site.pdb_G SES surface, 16863 of 159078 triangles, 6q9a_PastP-site.pdb_J SES
    7054 surface, 139516 of 140984 triangles, 6q9a_PastP-site.pdb_L SES surface,
    7055 6q9a_PastP-site.pdb_M SES surface, 634 of 143600 triangles, 6q9a_PastP-
    7056 site.pdb_N SES surface, 32045 of 117956 triangles, cap far, 4118 of 4257
    7057 triangles, 6q9a_PastP-site.pdb_O SES surface, 37139 of 110652 triangles,
    7058 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES surface,
    7059 6q9a_PastP-site.pdb_S SES surface, 6q9a_PastP-site.pdb_T SES surface, 76306 of
    7060 106536 triangles, cap far, 6q9a_PastP-site.pdb_U SES surface, 6q9a_PastP-
    7061 site.pdb_V SES surface, 42572 of 94850 triangles, 6q9a_PastP-site.pdb_W SES
    7062 surface, 47304 of 81572 triangles, 6q9a_PastP-site.pdb_X SES surface, 55720 of
    7063 88272 triangles, 6q9a_PastP-site.pdb_Y SES surface, 71798 of 71820 triangles,
    7064 cap far, 6q9a_PastP-site.pdb_Z SES surface, 6q9a_PastP-site.pdb_b SES surface,
    7065 48327 of 76322 triangles, cap far, 6q9a_PastP-site.pdb_c SES surface, 9005 of
    7066 58266 triangles, 6q9a_PastP-site.pdb_d SES surface, 59998 of 61184 triangles,
    7067 6q9a_PastP-site.pdb_e SES surface, 72252 of 81712 triangles 
    7068 
    7069 > select up
    7070 
    7071 61698 atoms, 5075 residues, 63 models selected 
    7072 
    7073 > select down
    7074 
    7075 6 models selected 
    7076 
    7077 > select clear
    7078 
    7079 > show #!5 cartoons
    7080 
    7081 > hide #!5 cartoons
    7082 
    7083 > ui tool show "Side View"
    7084 
    7085 > view 1
    7086 
    7087 > view 1
    7088 
    7089 > view 2
    7090 
    7091 > view name 2
    7092 
    7093 > hide #!5 models
    7094 
    7095 > show #!1 models
    7096 
    7097 > save C:\Users\claud\Desktop\image1.png supersample 3
    7098 
    7099 > hide #!1 models
    7100 
    7101 > show #!2 models
    7102 
    7103 > save C:\Users\claud\Desktop\image2.png supersample 3
    7104 
    7105 > show #!3 models
    7106 
    7107 > hide #!2 models
    7108 
    7109 > save C:\Users\claud\Desktop\image3.png supersample 3
    7110 
    7111 > show #!4 models
    7112 
    7113 > hide #!3 models
    7114 
    7115 > save C:\Users\claud\Desktop\image4.png supersample 3
    7116 
    7117 > show #!5 models
    7118 
    7119 > hide #!4 models
    7120 
    7121 > save C:\Users\claud\Desktop\image5.png supersample 3
    7122 
    7123 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    7124 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    7125 
    7126 > view 1
    7127 
    7128 > view name 1
    7129 
    7130 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    7131 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    7132 
    7133 Drag select of 6q9a_PastP-site.pdb_2 SES surface, 734735 of 4032392 triangles,
    7134 6q9a_PastP-site.pdb_g SES surface, 193275 of 207704 triangles, 6q9a_PastP-
    7135 site.pdb_h SES surface, 202041 of 210806 triangles, 6q9a_PastP-site.pdb_i SES
    7136 surface, 185019 of 212800 triangles, 6q9a_PastP-site.pdb_j SES surface, 91758
    7137 of 145330 triangles, 6q9a_PastP-site.pdb_l SES surface, 1861 of 158128
    7138 triangles, 6q9a_PastP-site.pdb_m SES surface, 30481 of 123032 triangles,
    7139 6q9a_PastP-site.pdb_n SES surface, 105345 of 138712 triangles, 6q9a_PastP-
    7140 site.pdb_o SES surface, 106532 of 118120 triangles, 6q9a_PastP-site.pdb_s SES
    7141 surface, 100102 of 127050 triangles, 6q9a_PastP-site.pdb_u SES surface, 3499
    7142 of 90320 triangles, 6q9a_PastP-site.pdb_x SES surface, 278 of 94138 triangles,
    7143 6q9a_PastP-site.pdb_z SES surface, 7032 of 108134 triangles 
    7144 
    7145 > view 1
    7146 
    7147 > hide #!5 surfaces
    7148 
    7149 > show #!5 surfaces
    7150 
    7151 > view 1
    7152 
    7153 > surface hidePatches #5.37-38,42,44-45,49,54,56#!5.2,39-40,43,51
    7154 
    7155 > select clear
    7156 
    7157 > select #5/r:35@CB
    7158 
    7159 1 atom, 1 residue, 1 model selected 
    7160 
    7161 > select add #5/q:86@O
    7162 
    7163 2 atoms, 2 residues, 2 models selected 
    7164 
    7165 > select add #5/y:76@CB
    7166 
    7167 3 atoms, 3 residues, 3 models selected 
    7168 
    7169 > select add #5/t:31@CD1
    7170 
    7171 4 atoms, 4 residues, 4 models selected 
    7172 
    7173 > select add #5/w:12@NH1
    7174 
    7175 5 atoms, 5 residues, 5 models selected 
    7176 
    7177 > select add #5/p:98@NH1
    7178 
    7179 6 atoms, 6 residues, 6 models selected 
    7180 
    7181 > select up
    7182 
    7183 55 atoms, 49 bonds, 6 residues, 7 models selected 
    7184 
    7185 > select up
    7186 
    7187 671 atoms, 671 bonds, 88 residues, 7 models selected 
    7188 
    7189 > select up
    7190 
    7191 4636 atoms, 4698 bonds, 592 residues, 7 models selected 
    7192 
    7193 > select up
    7194 
    7195 146471 atoms, 158591 bonds, 11048 residues, 7 models selected 
    7196 
    7197 > select clear
    7198 
    7199 > select add #5/y:69@CG
    7200 
    7201 1 atom, 1 residue, 1 model selected 
    7202 
    7203 > select add #5/v:9@CB
    7204 
    7205 2 atoms, 2 residues, 2 models selected 
    7206 
    7207 > select add #5/q:66@CE2
    7208 
    7209 3 atoms, 3 residues, 3 models selected 
    7210 
    7211 > select add #5/t:22@OG1
    7212 
    7213 4 atoms, 4 residues, 4 models selected 
    7214 
    7215 > select add #5/w:12@CD
    7216 
    7217 5 atoms, 5 residues, 5 models selected 
    7218 
    7219 > select add #5/p:98@CG
    7220 
    7221 6 atoms, 6 residues, 6 models selected 
    7222 
    7223 > select add #5/r:34@C
    7224 
    7225 7 atoms, 7 residues, 7 models selected 
    7226 
    7227 > select up
    7228 
    7229 67 atoms, 61 bonds, 7 residues, 8 models selected 
    7230 
    7231 > select up
    7232 
    7233 471 atoms, 467 bonds, 63 residues, 8 models selected 
    7234 
    7235 > select up
    7236 
    7237 5285 atoms, 5356 bonds, 672 residues, 8 models selected 
    7238 
    7239 > surface hidePatches (#!5 & sel)
    7240 
    7241 > select #5/k:100@O
    7242 
    7243 1 atom, 1 residue, 1 model selected 
    7244 
    7245 > select clear
    7246 
    7247 > select #5/k:101@CA
    7248 
    7249 1 atom, 1 residue, 1 model selected 
    7250 
    7251 > select up
    7252 
    7253 7 atoms, 7 bonds, 1 residue, 2 models selected 
    7254 
    7255 > select up
    7256 
    7257 89 atoms, 90 bonds, 12 residues, 2 models selected 
    7258 
    7259 > select up
    7260 
    7261 848 atoms, 867 bonds, 104 residues, 2 models selected 
    7262 
    7263 > surface hidePatches (#!5 & sel)
    7264 
    7265 > view 1
    7266 
    7267 > save C:\Users\claud\Desktop\image6.png supersample 3
    7268 
    7269 > show sel surfaces
    7270 
    7271 > select clear
    7272 
    7273 > select #5
    7274 
    7275 146471 atoms, 158591 bonds, 11048 residues, 18 models selected 
    7276 
    7277 > show sel surfaces
    7278 
    7279 > select clear
    7280 
    7281 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 5790145 of 7584890
    7282 triangles, 6q9a_PastP-site.pdb_3 SES surface, 236269 of 336264 triangles,
    7283 6q9a_PastP-site.pdb_6 SES surface, 6q9a_PastP-site.pdb_7 SES surface, 13731 of
    7284 226010 triangles, 6q9a_PastP-site.pdb_B SES surface, 71055 of 284462
    7285 triangles, 6q9a_PastP-site.pdb_C SES surface, 206439 of 210654 triangles,
    7286 6q9a_PastP-site.pdb_D SES surface, 6q9a_PastP-site.pdb_F SES surface, 101787
    7287 of 170510 triangles, 6q9a_PastP-site.pdb_G SES surface, 86146 of 159078
    7288 triangles, 6q9a_PastP-site.pdb_H SES surface, 3640 of 151294 triangles,
    7289 6q9a_PastP-site.pdb_J SES surface, 6q9a_PastP-site.pdb_K SES surface, 6596 of
    7290 118336 triangles, 6q9a_PastP-site.pdb_L SES surface, 6q9a_PastP-site.pdb_M SES
    7291 surface, 75188 of 143600 triangles, 6q9a_PastP-site.pdb_N SES surface,
    7292 6q9a_PastP-site.pdb_O SES surface, 105561 of 110652 triangles, 6q9a_PastP-
    7293 site.pdb_P SES surface, 42160 of 126368 triangles, 6q9a_PastP-site.pdb_Q SES
    7294 surface, 6q9a_PastP-site.pdb_R SES surface, 6q9a_PastP-site.pdb_S SES surface,
    7295 6q9a_PastP-site.pdb_T SES surface, 6q9a_PastP-site.pdb_U SES surface,
    7296 6q9a_PastP-site.pdb_V SES surface, 6q9a_PastP-site.pdb_W SES surface, 80809 of
    7297 81572 triangles, 6q9a_PastP-site.pdb_X SES surface, 6q9a_PastP-site.pdb_Y SES
    7298 surface, 6q9a_PastP-site.pdb_Z SES surface, 6q9a_PastP-site.pdb_b SES surface,
    7299 6q9a_PastP-site.pdb_c SES surface, 47942 of 58266 triangles, 6q9a_PastP-
    7300 site.pdb_d SES surface, 6q9a_PastP-site.pdb_e SES surface, 6q9a_PastP-
    7301 site.pdb_f SES surface, 20076 of 43520 triangles 
    7302 Drag select of 6q9a_PastP-site.pdb_1 SES surface, 2104954 of 7584890
    7303 triangles, 6q9a_PastP-site.pdb_6 SES surface, 10224 of 27260 triangles,
    7304 6q9a_PastP-site.pdb_C SES surface, 8874 of 210654 triangles, 6q9a_PastP-
    7305 site.pdb_D SES surface, 185932 of 208968 triangles, 6q9a_PastP-site.pdb_J SES
    7306 surface, 76307 of 140984 triangles, 6q9a_PastP-site.pdb_L SES surface, 123816
    7307 of 170008 triangles, 6q9a_PastP-site.pdb_N SES surface, 15467 of 117956
    7308 triangles, 6q9a_PastP-site.pdb_Q SES surface, 6q9a_PastP-site.pdb_R SES
    7309 surface, 111974 of 113126 triangles, 6q9a_PastP-site.pdb_S SES surface, 96913
    7310 of 110722 triangles, 6q9a_PastP-site.pdb_T SES surface, 98780 of 106536
    7311 triangles, 6q9a_PastP-site.pdb_U SES surface, 6q9a_PastP-site.pdb_W SES
    7312 surface, 637 of 81572 triangles, 6q9a_PastP-site.pdb_Y SES surface,
    7313 6q9a_PastP-site.pdb_Z SES surface, 48948 of 57718 triangles, 6q9a_PastP-
    7314 site.pdb_b SES surface, 67051 of 76322 triangles, 6q9a_PastP-site.pdb_d SES
    7315 surface, 11539 of 61184 triangles, 6q9a_PastP-site.pdb_e SES surface, 28367 of
    7316 81712 triangles 
    7317 
    7318 > select up
    7319 
    7320 70419 atoms, 5989 residues, 57 models selected 
    7321 
    7322 > select down
    7323 
    7324 Nothing selected 
    7325 
    7326 > select clear
    7327 
    7328 Drag select of 6q9a_PastP-site.pdb_2 SES surface, 626185 of 4032392 triangles,
    7329 6q9a_PastP-site.pdb_g SES surface, 185279 of 207704 triangles, 6q9a_PastP-
    7330 site.pdb_h SES surface, 195381 of 210806 triangles, 6q9a_PastP-site.pdb_i SES
    7331 surface, 164439 of 212800 triangles, 6q9a_PastP-site.pdb_j SES surface, 78469
    7332 of 145330 triangles, 6q9a_PastP-site.pdb_l SES surface, 308 of 158128
    7333 triangles, 6q9a_PastP-site.pdb_m SES surface, 15294 of 123032 triangles,
    7334 6q9a_PastP-site.pdb_n SES surface, 93180 of 138712 triangles, 6q9a_PastP-
    7335 site.pdb_o SES surface, 103332 of 118120 triangles, 6q9a_PastP-site.pdb_s SES
    7336 surface, 84032 of 127050 triangles, 6q9a_PastP-site.pdb_u SES surface, 1310 of
    7337 90320 triangles, 6q9a_PastP-site.pdb_z SES surface, 4320 of 108134 triangles 
    7338 Drag select of 6q9a_PastP-site.pdb_2 SES surface, 2373397 of 4032392
    7339 triangles, 6q9a_PastP-site.pdb_g SES surface, 6q9a_PastP-site.pdb_h SES
    7340 surface, 6q9a_PastP-site.pdb_i SES surface, 6q9a_PastP-site.pdb_j SES surface,
    7341 6q9a_PastP-site.pdb_l SES surface, 2779 of 158128 triangles, 6q9a_PastP-
    7342 site.pdb_m SES surface, 6q9a_PastP-site.pdb_n SES surface, 76579 of 138712
    7343 triangles, 6q9a_PastP-site.pdb_o SES surface, 116623 of 118120 triangles,
    7344 6q9a_PastP-site.pdb_q SES surface, 85575 of 136950 triangles, 6q9a_PastP-
    7345 site.pdb_s SES surface, 106772 of 127050 triangles, 6q9a_PastP-site.pdb_t SES
    7346 surface, 12902 of 99746 triangles, 6q9a_PastP-site.pdb_u SES surface,
    7347 6q9a_PastP-site.pdb_v SES surface, 62919 of 92440 triangles, 6q9a_PastP-
    7348 site.pdb_w SES surface, 281 of 78096 triangles, 6q9a_PastP-site.pdb_x SES
    7349 surface, 45 of 94138 triangles, 6q9a_PastP-site.pdb_y SES surface, 37455 of
    7350 94832 triangles, 6q9a_PastP-site.pdb_z SES surface, 23079 of 108134 triangles 
    7351 
    7352 > select add #5/r:39@CG1
    7353 
    7354 1 atom, 1 residue, 19 models selected 
    7355 
    7356 > hide sel surfaces
    7357 
    7358 > show sel surfaces
    7359 
    7360 > select clear
    7361 
    7362 > show #!5 cartoons
    7363 
    7364 > hide #!5 surfaces
    7365 
    7366 > select #5
    7367 
    7368 146471 atoms, 158591 bonds, 11048 residues, 18 models selected 
    7369 
    7370 > color sel bychain
    7371 
    7372 > select clear
    7373 
    7374 > show #!5 surfaces
    7375 
    7376 > hide #!5 surfaces
    7377 
    7378 Drag select of 5152 residues 
    7379 
    7380 > select up
    7381 
    7382 121592 atoms, 133771 bonds, 7496 residues, 34 models selected 
    7383 
    7384 > select down
    7385 
    7386 74666 atoms, 5152 residues, 34 models selected 
    7387 
    7388 > select up
    7389 
    7390 121592 atoms, 133771 bonds, 7496 residues, 34 models selected 
    7391 
    7392 > select down
    7393 
    7394 74666 atoms, 5152 residues, 34 models selected 
    7395 
    7396 > select up
    7397 
    7398 121592 atoms, 133771 bonds, 7496 residues, 34 models selected 
    7399 
    7400 > select #5
    7401 
    7402 146471 atoms, 158591 bonds, 11048 residues, 18 models selected 
    7403 
    7404 > select clear
    7405 
    7406 > select #5/1:278
    7407 
    7408 22 atoms, 24 bonds, 1 residue, 1 model selected 
    7409 
    7410 > select #5/G:65
    7411 
    7412 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7413 
    7414 > select #5/O:18
    7415 
    7416 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7417 
    7418 > select #5/W:80
    7419 
    7420 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7421 
    7422 > select #5/1:2558
    7423 
    7424 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7425 
    7426 > select #5/I:126
    7427 
    7428 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7429 
    7430 > select #5/M:103
    7431 
    7432 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7433 
    7434 > select add #5/2:223
    7435 
    7436 34 atoms, 36 bonds, 2 residues, 2 models selected 
    7437 
    7438 > select add #5/O:84
    7439 
    7440 43 atoms, 44 bonds, 3 residues, 3 models selected 
    7441 
    7442 > select add #5/3:8
    7443 
    7444 63 atoms, 65 bonds, 4 residues, 4 models selected 
    7445 
    7446 > select add #5/d:21
    7447 
    7448 74 atoms, 75 bonds, 5 residues, 5 models selected 
    7449 
    7450 > select add #5/L:83
    7451 
    7452 79 atoms, 79 bonds, 6 residues, 6 models selected 
    7453 
    7454 > select add #5/X:72
    7455 
    7456 90 atoms, 89 bonds, 7 residues, 7 models selected 
    7457 
    7458 > select add #5/G:45
    7459 
    7460 99 atoms, 97 bonds, 8 residues, 8 models selected 
    7461 
    7462 > select add #5/1:364
    7463 
    7464 119 atoms, 118 bonds, 9 residues, 9 models selected 
    7465 
    7466 > select add #5/D:103
    7467 
    7468 123 atoms, 121 bonds, 10 residues, 10 models selected 
    7469 
    7470 > select add #5/1:1245
    7471 
    7472 146 atoms, 146 bonds, 11 residues, 11 models selected 
    7473 
    7474 > select add #5/L:6
    7475 
    7476 154 atoms, 153 bonds, 12 residues, 11 models selected 
    7477 
    7478 > select add #5/S:61
    7479 
    7480 162 atoms, 160 bonds, 13 residues, 11 models selected 
    7481 
    7482 > select add #5/Q:58
    7483 
    7484 173 atoms, 170 bonds, 14 residues, 12 models selected 
    7485 
    7486 > select add #5/V:45
    7487 
    7488 181 atoms, 177 bonds, 15 residues, 13 models selected 
    7489 
    7490 > select add #5/I:129
    7491 
    7492 190 atoms, 185 bonds, 16 residues, 14 models selected 
    7493 
    7494 > select add #5/F:43
    7495 
    7496 197 atoms, 191 bonds, 17 residues, 15 models selected 
    7497 
    7498 > select add #5/Z:36
    7499 
    7500 204 atoms, 197 bonds, 18 residues, 16 models selected 
    7501 
    7502 > select add #5/R:24
    7503 
    7504 213 atoms, 205 bonds, 19 residues, 17 models selected 
    7505 
    7506 > select add #5/U:71
    7507 
    7508 218 atoms, 209 bonds, 20 residues, 18 models selected 
    7509 
    7510 > select add #5/Y:14
    7511 
    7512 226 atoms, 216 bonds, 21 residues, 19 models selected 
    7513 
    7514 > select add #5/T:21
    7515 
    7516 232 atoms, 221 bonds, 22 residues, 19 models selected 
    7517 
    7518 > select add #5/N:114
    7519 
    7520 241 atoms, 229 bonds, 23 residues, 20 models selected 
    7521 
    7522 > select add #5/b:31
    7523 
    7524 249 atoms, 236 bonds, 24 residues, 21 models selected 
    7525 
    7526 > select add #5/J:107
    7527 
    7528 253 atoms, 239 bonds, 25 residues, 22 models selected 
    7529 
    7530 > select add #5/P:7
    7531 
    7532 262 atoms, 247 bonds, 26 residues, 23 models selected 
    7533 
    7534 > select add #5/C:24
    7535 
    7536 269 atoms, 253 bonds, 27 residues, 24 models selected 
    7537 
    7538 > select add #5/P:82
    7539 
    7540 277 atoms, 260 bonds, 28 residues, 25 models selected 
    7541 
    7542 > select add #5/K:61
    7543 
    7544 284 atoms, 266 bonds, 29 residues, 25 models selected 
    7545 
    7546 > select add #5/B:79
    7547 
    7548 293 atoms, 274 bonds, 30 residues, 25 models selected 
    7549 
    7550 > select add #5/c:49
    7551 
    7552 305 atoms, 286 bonds, 31 residues, 26 models selected 
    7553 
    7554 > select add #5/E:14
    7555 
    7556 314 atoms, 294 bonds, 32 residues, 26 models selected 
    7557 
    7558 > select add #5/a:11
    7559 
    7560 323 atoms, 302 bonds, 33 residues, 27 models selected 
    7561 
    7562 > select add #5/7:65
    7563 
    7564 345 atoms, 326 bonds, 34 residues, 28 models selected 
    7565 
    7566 > select up
    7567 
    7568 102648 atoms, 114564 bonds, 5041 residues, 29 models selected 
    7569 
    7570 > select down
    7571 
    7572 345 atoms, 326 bonds, 34 residues, 32 models selected 
    7573 
    7574 > select clear
    7575 
    7576 > select #5/1:2398
    7577 
    7578 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7579 
    7580 > select up
    7581 
    7582 62336 atoms, 69816 bonds, 2903 residues, 2 models selected 
    7583 
    7584 > select down
    7585 
    7586 20 atoms, 21 bonds, 1 residue, 2 models selected 
    7587 
    7588 > select #5/7:44
    7589 
    7590 22 atoms, 24 bonds, 1 residue, 1 model selected 
    7591 
    7592 > select add #5/a:13
    7593 
    7594 29 atoms, 30 bonds, 2 residues, 2 models selected 
    7595 
    7596 > select add #5/E:96
    7597 
    7598 37 atoms, 37 bonds, 3 residues, 3 models selected 
    7599 
    7600 > select add #5/3:35
    7601 
    7602 57 atoms, 58 bonds, 4 residues, 4 models selected 
    7603 
    7604 > select add #5/O:74
    7605 
    7606 64 atoms, 64 bonds, 5 residues, 5 models selected 
    7607 
    7608 > select add #5/c:36
    7609 
    7610 72 atoms, 71 bonds, 6 residues, 5 models selected 
    7611 
    7612 > select add #5/X:57
    7613 
    7614 83 atoms, 81 bonds, 7 residues, 6 models selected 
    7615 
    7616 > select add #5/B:172
    7617 
    7618 90 atoms, 87 bonds, 8 residues, 7 models selected 
    7619 
    7620 > select add #5/G:51
    7621 
    7622 101 atoms, 97 bonds, 9 residues, 7 models selected 
    7623 
    7624 > select add #5/d:33
    7625 
    7626 112 atoms, 107 bonds, 10 residues, 8 models selected 
    7627 
    7628 > select add #5/L:133
    7629 
    7630 117 atoms, 111 bonds, 11 residues, 9 models selected 
    7631 
    7632 > select add #5/D:106
    7633 
    7634 126 atoms, 119 bonds, 12 residues, 10 models selected 
    7635 
    7636 > select add #5/Y:25
    7637 
    7638 135 atoms, 127 bonds, 13 residues, 11 models selected 
    7639 
    7640 > select add #5/U:94
    7641 
    7642 146 atoms, 137 bonds, 14 residues, 12 models selected 
    7643 
    7644 > select add #5/I:126
    7645 
    7646 157 atoms, 147 bonds, 15 residues, 13 models selected 
    7647 
    7648 > select add #5/T:9
    7649 
    7650 166 atoms, 155 bonds, 16 residues, 14 models selected 
    7651 
    7652 > select add #5/M:131
    7653 
    7654 173 atoms, 161 bonds, 17 residues, 15 models selected 
    7655 
    7656 > select add #5/V:50
    7657 
    7658 181 atoms, 168 bonds, 18 residues, 16 models selected 
    7659 
    7660 > select add #5/I:43
    7661 
    7662 186 atoms, 172 bonds, 19 residues, 17 models selected 
    7663 
    7664 > select add #5/F:86
    7665 
    7666 195 atoms, 180 bonds, 20 residues, 17 models selected 
    7667 
    7668 > select add #5/K:39
    7669 
    7670 203 atoms, 187 bonds, 21 residues, 18 models selected 
    7671 
    7672 > select add #5/P:74
    7673 
    7674 214 atoms, 198 bonds, 22 residues, 19 models selected 
    7675 
    7676 > select add #5/C:37
    7677 
    7678 221 atoms, 204 bonds, 23 residues, 20 models selected 
    7679 
    7680 > select add #5/3:105
    7681 
    7682 244 atoms, 229 bonds, 24 residues, 21 models selected 
    7683 
    7684 > select add #5/Z:37
    7685 
    7686 253 atoms, 237 bonds, 25 residues, 21 models selected 
    7687 
    7688 > select add #5/R:60
    7689 
    7690 262 atoms, 245 bonds, 26 residues, 22 models selected 
    7691 
    7692 > select add #5/S:55
    7693 
    7694 270 atoms, 252 bonds, 27 residues, 23 models selected 
    7695 
    7696 > select add #5/1:1445
    7697 
    7698 293 atoms, 277 bonds, 28 residues, 24 models selected 
    7699 
    7700 > select add #5/N:87
    7701 
    7702 304 atoms, 288 bonds, 29 residues, 25 models selected 
    7703 
    7704 > select add #5/J:31
    7705 
    7706 313 atoms, 296 bonds, 30 residues, 26 models selected 
    7707 
    7708 > select add #5/Q:108
    7709 
    7710 318 atoms, 300 bonds, 31 residues, 27 models selected 
    7711 
    7712 > select add #5/3:95
    7713 
    7714 338 atoms, 321 bonds, 32 residues, 28 models selected 
    7715 
    7716 > select add #5/b:14
    7717 
    7718 342 atoms, 324 bonds, 33 residues, 28 models selected 
    7719 
    7720 > select add #5/N:96
    7721 
    7722 353 atoms, 334 bonds, 34 residues, 29 models selected 
    7723 
    7724 > select up
    7725 
    7726 69028 atoms, 76994 bonds, 3413 residues, 29 models selected 
    7727 
    7728 > select up
    7729 
    7730 91926 atoms, 99931 bonds, 6641 residues, 31 models selected 
    7731 
    7732 > select up
    7733 
    7734 146471 atoms, 158591 bonds, 11048 residues, 31 models selected 
    7735 
    7736 > select down
    7737 
    7738 91926 atoms, 99931 bonds, 6641 residues, 57 models selected 
    7739 
    7740 > hide sel cartoons
    7741 
    7742 > select #5/e:55
    7743 
    7744 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7745 
    7746 > select add #5/W:69
    7747 
    7748 19 atoms, 18 bonds, 2 residues, 2 models selected 
    7749 
    7750 > select add #5/f:16
    7751 
    7752 27 atoms, 25 bonds, 3 residues, 3 models selected 
    7753 
    7754 > select add #5/H:16
    7755 
    7756 33 atoms, 30 bonds, 4 residues, 4 models selected 
    7757 Drag select of 4 residues 
    7758 
    7759 > select up
    7760 
    7761 373 atoms, 369 bonds, 57 residues, 6 models selected 
    7762 
    7763 > select up
    7764 
    7765 2475 atoms, 2502 bonds, 332 residues, 6 models selected 
    7766 
    7767 > hide sel surfaces
    7768 
    7769 > hide sel cartoons
    7770 
    7771 > select clear
    7772 
    7773 Drag select of 3946 residues 
    7774 
    7775 > show sel surfaces
    7776 
    7777 > hide sel cartoons
    7778 
    7779 > ui tool show "Color Actions"
    7780 
    7781 > color sel lemon chiffon
    7782 
    7783 > select clear
    7784 
    7785 > view 1
    7786 
    7787 > save C:\Users\claud\Desktop\image7.png supersample 3
    7788 
    7789 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    7790 > regulation/Figures/CimeraSessions/ChmX_Figure1_Trans-Transl_v2.cxs"
    7791 
    7792 ——— End of log from Fri Nov 6 22:29:56 2020 ———
    7793 
    7794 opened ChimeraX session 
    7795 
    7796 > open C:\Users\claud\Downloads\5mgp-pdb-bundle.tar\5mgp-pdb-
    7797 > bundle\huter_corrected.pdb format pdb
    7798 
    7799 Summary of feedback from opening C:\Users\claud\Downloads\5mgp-pdb-
    7800 bundle.tar\5mgp-pdb-bundle\huter_corrected.pdb 
    7801 --- 
    7802 warning | Ignored bad PDB record found on line 147218 
    7803 END 
    7804  
    7805 Chain information for huter_corrected.pdb #14 
    7806 --- 
    7807 Chain | Description 
    7808 0 | No description available 
    7809 1 | No description available 
    7810 2 | No description available 
    7811 3 | No description available 
    7812 4 | No description available 
    7813 6 | No description available 
    7814 A | No description available 
    7815 B | No description available 
    7816 C | No description available 
    7817 D | No description available 
    7818 E | No description available 
    7819 F | No description available 
    7820 G | No description available 
    7821 H | No description available 
    7822 J | No description available 
    7823 K | No description available 
    7824 L | No description available 
    7825 M | No description available 
    7826 N | No description available 
    7827 O | No description available 
    7828 P | No description available 
    7829 Q | No description available 
    7830 R | No description available 
    7831 S | No description available 
    7832 T | No description available 
    7833 U | No description available 
    7834 V | No description available 
    7835 W | No description available 
    7836 X | No description available 
    7837 Y | No description available 
    7838 Z | No description available 
    7839 a | No description available 
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    7842 d | No description available 
    7843 e | No description available 
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    7846 h | No description available 
    7847 i | No description available 
    7848 j | No description available 
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    7850 l | No description available 
    7851 m | No description available 
    7852 n | No description available 
    7853 o | No description available 
    7854 p | No description available 
    7855 q | No description available 
    7856 r | No description available 
    7857 s | No description available 
    7858 t | No description available 
    7859 u | No description available 
    7860 v | No description available 
    7861 w | No description available 
    7862 x | No description available 
    7863 z | No description available 
    7864  
    7865 
    7866 > open C:\Users\claud\Downloads\5mdv-pdb-bundle.tar\5mdv-pdb-bundle\5mdv.pdb
    7867 > format pdb
    7868 
    7869 Summary of feedback from opening C:\Users\claud\Downloads\5mdv-pdb-
    7870 bundle.tar\5mdv-pdb-bundle\5mdv.pdb 
    7871 --- 
    7872 warning | Ignored bad PDB record found on line 151407 
    7873 END 
    7874  
    7875 Chain information for 5mdv.pdb #15 
    7876 --- 
    7877 Chain | Description 
    7878 1 | No description available 
    7879 2 | No description available 
    7880 3 | No description available 
    7881 4 | No description available 
    7882 5 | No description available 
    7883 6 | No description available 
    7884 7 | No description available 
    7885 B | No description available 
    7886 C | No description available 
    7887 D | No description available 
    7888 E | No description available 
    7889 F | No description available 
    7890 G | No description available 
    7891 H | No description available 
    7892 I | No description available 
    7893 J | No description available 
    7894 K | No description available 
    7895 L | No description available 
    7896 M | No description available 
    7897 N | No description available 
    7898 O | No description available 
    7899 P | No description available 
    7900 Q | No description available 
    7901 R | No description available 
    7902 S | No description available 
    7903 T | No description available 
    7904 U | No description available 
    7905 V | No description available 
    7906 W | No description available 
    7907 X | No description available 
    7908 Y | No description available 
    7909 Z | No description available 
    7910 a | No description available 
    7911 b | No description available 
    7912 c | No description available 
    7913 d | No description available 
    7914 e | No description available 
    7915 f | No description available 
    7916 g | No description available 
    7917 h | No description available 
    7918 i | No description available 
    7919 j | No description available 
    7920 k | No description available 
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    7923 n | No description available 
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    7926 q | No description available 
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    7931 v | No description available 
    7932 w | No description available 
    7933 x | No description available 
    7934 y | No description available 
    7935 z | No description available 
    7936  
    7937 
    7938 > hide #!14 models
    7939 
    7940 > hide #15 models
    7941 
    7942 > show #15 models
    7943 
    7944 > show #!14 models
    7945 
    7946 > open C:\Users\claud\Downloads\5mdw-pdb-bundle.tar\5mdw-pdb-bundle\5mdw.pdb
    7947 > format pdb
    7948 
    7949 Summary of feedback from opening C:\Users\claud\Downloads\5mdw-pdb-
    7950 bundle.tar\5mdw-pdb-bundle\5mdw.pdb 
    7951 --- 
    7952 warning | Ignored bad PDB record found on line 151107 
    7953 END 
    7954  
    7955 Chain information for 5mdw.pdb #16 
    7956 --- 
    7957 Chain | Description 
    7958 1 | No description available 
    7959 2 | No description available 
    7960 3 | No description available 
    7961 4 | No description available 
    7962 5 | No description available 
    7963 6 | No description available 
    7964 7 | No description available 
    7965 B | No description available 
    7966 C | No description available 
    7967 D | No description available 
    7968 E | No description available 
    7969 F | No description available 
    7970 G | No description available 
    7971 H | No description available 
    7972 I | No description available 
    7973 J | No description available 
    7974 K | No description available 
    7975 L | No description available 
    7976 M | No description available 
    7977 N | No description available 
    7978 O | No description available 
    7979 P | No description available 
    7980 Q | No description available 
    7981 R | No description available 
    7982 S | No description available 
    7983 T | No description available 
    7984 U | No description available 
    7985 V | No description available 
    7986 W | No description available 
    7987 X | No description available 
    7988 Y | No description available 
    7989 Z | No description available 
    7990 a | No description available 
    7991 b | No description available 
    7992 c | No description available 
    7993 d | No description available 
    7994 e | No description available 
    7995 f | No description available 
    7996 g | No description available 
    7997 h | No description available 
    7998 i | No description available 
    7999 j | No description available 
    8000 k | No description available 
    8001 l | No description available 
    8002 m | No description available 
    8003 n | No description available 
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    8011 v | No description available 
    8012 w | No description available 
    8013 x | No description available 
    8014 y | No description available 
    8015 z | No description available 
    8016  
    8017 
    8018 > open C:\Users\claud\Downloads\6szs-pdb-bundle.tar\6szs-pdb-bundle\6szs.pdb
    8019 > format pdb
    8020 
    8021 Summary of feedback from opening C:\Users\claud\Downloads\6szs-pdb-
    8022 bundle.tar\6szs-pdb-bundle\6szs.pdb 
    8023 --- 
    8024 warning | Ignored bad PDB record found on line 147968 
    8025 END 
    8026  
    8027 Chain information for 6szs.pdb #17 
    8028 --- 
    8029 Chain | Description 
    8030 0 | No description available 
    8031 1 | No description available 
    8032 2 | No description available 
    8033 3 | No description available 
    8034 4 | No description available 
    8035 5 | No description available 
    8036 A | No description available 
    8037 B | No description available 
    8038 C | No description available 
    8039 D | No description available 
    8040 E | No description available 
    8041 F | No description available 
    8042 G | No description available 
    8043 H | No description available 
    8044 J | No description available 
    8045 K | No description available 
    8046 L | No description available 
    8047 M | No description available 
    8048 N | No description available 
    8049 O | No description available 
    8050 P | No description available 
    8051 Q | No description available 
    8052 R | No description available 
    8053 S | No description available 
    8054 T | No description available 
    8055 U | No description available 
    8056 V | No description available 
    8057 W | No description available 
    8058 X | No description available 
    8059 Y | No description available 
    8060 Z | No description available 
    8061 a | No description available 
    8062 b | No description available 
    8063 c | No description available 
    8064 d | No description available 
    8065 e | No description available 
    8066 f | No description available 
    8067 g | No description available 
    8068 h | No description available 
    8069 i | No description available 
    8070 j | No description available 
    8071 k | No description available 
    8072 l | No description available 
    8073 m | No description available 
    8074 n | No description available 
    8075 o | No description available 
    8076 p | No description available 
    8077 q | No description available 
    8078 r | No description available 
    8079 s | No description available 
    8080 t | No description available 
    8081 u | No description available 
    8082 v | No description available 
    8083 x | No description available 
    8084 y | No description available 
    8085 z | No description available 
    8086  
    8087 
    8088 > hide #15 models
    8089 
    8090 > hide #!16 models
    8091 
    8092 > hide #17 models
    8093 
    8094 > hide #!5 models
    8095 
    8096 > show #!2 models
    8097 
    8098 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8099 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8100 
    8101 ——— End of log from Tue Nov 10 00:04:42 2020 ———
    8102 
    8103 opened ChimeraX session 
    8104 
    8105 > close #1,3-4,6-10,12
    8106 
    8107 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8108 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8109 
    8110 > ui tool show Matchmaker
    8111 
    8112 > matchmaker #14/A to #2/1 pairing ss matrix Nucleic
    8113 
    8114 Parameters 
    8115 --- 
    8116 Chain pairing | ss 
    8117 Alignment algorithm | Needleman-Wunsch 
    8118 Similarity matrix | Nucleic 
    8119 SS fraction | 0.3 
    8120 Gap open (HH/SS/other) | 18/18/6 
    8121 Gap extend | 1 
    8122 SS matrix |  |  | H | S | O 
    8123 ---|---|---|--- 
    8124 H | 6 | -9 | -6 
    8125 S |  | 6 | -6 
    8126 O |  |  | 4 
    8127 Iteration cutoff | 2 
    8128  
    8129 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with huter_corrected.pdb, chain A
    8130 (#14), sequence alignment score = 11493.7 
    8131 RMSD between 2391 pruned atom pairs is 1.238 angstroms; (across all 2900
    8132 pairs: 1.846) 
    8133  
    8134 
    8135 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8136 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8137 
    8138 > hide #!14 models
    8139 
    8140 > show #15 models
    8141 
    8142 > ui tool show Matchmaker
    8143 
    8144 > matchmaker #15/1 to #2/1 pairing ss matrix Nucleic
    8145 
    8146 Parameters 
    8147 --- 
    8148 Chain pairing | ss 
    8149 Alignment algorithm | Needleman-Wunsch 
    8150 Similarity matrix | Nucleic 
    8151 SS fraction | 0.3 
    8152 Gap open (HH/SS/other) | 18/18/6 
    8153 Gap extend | 1 
    8154 SS matrix |  |  | H | S | O 
    8155 ---|---|---|--- 
    8156 H | 6 | -9 | -6 
    8157 S |  | 6 | -6 
    8158 O |  |  | 4 
    8159 Iteration cutoff | 2 
    8160  
    8161 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 5mdv.pdb, chain 1 (#15),
    8162 sequence alignment score = 11581.2 
    8163 RMSD between 2237 pruned atom pairs is 1.314 angstroms; (across all 2903
    8164 pairs: 1.819) 
    8165  
    8166 
    8167 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8168 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8169 
    8170 > hide #15 models
    8171 
    8172 > show #!16 models
    8173 
    8174 > ui tool show Matchmaker
    8175 
    8176 > matchmaker #16/1 to #2/1 pairing ss matrix Nucleic
    8177 
    8178 Parameters 
    8179 --- 
    8180 Chain pairing | ss 
    8181 Alignment algorithm | Needleman-Wunsch 
    8182 Similarity matrix | Nucleic 
    8183 SS fraction | 0.3 
    8184 Gap open (HH/SS/other) | 18/18/6 
    8185 Gap extend | 1 
    8186 SS matrix |  |  | H | S | O 
    8187 ---|---|---|--- 
    8188 H | 6 | -9 | -6 
    8189 S |  | 6 | -6 
    8190 O |  |  | 4 
    8191 Iteration cutoff | 2 
    8192  
    8193 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 5mdw.pdb, chain 1 (#16),
    8194 sequence alignment score = 11581.2 
    8195 RMSD between 2323 pruned atom pairs is 1.304 angstroms; (across all 2903
    8196 pairs: 1.686) 
    8197  
    8198 
    8199 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8200 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8201 
    8202 > hide #!16 models
    8203 
    8204 > show #!16 models
    8205 
    8206 > hide #!16 models
    8207 
    8208 > show #17 models
    8209 
    8210 > ui tool show Matchmaker
    8211 
    8212 > matchmaker #17/A to #2/1 pairing ss matrix Nucleic
    8213 
    8214 Parameters 
    8215 --- 
    8216 Chain pairing | ss 
    8217 Alignment algorithm | Needleman-Wunsch 
    8218 Similarity matrix | Nucleic 
    8219 SS fraction | 0.3 
    8220 Gap open (HH/SS/other) | 18/18/6 
    8221 Gap extend | 1 
    8222 SS matrix |  |  | H | S | O 
    8223 ---|---|---|--- 
    8224 H | 6 | -9 | -6 
    8225 S |  | 6 | -6 
    8226 O |  |  | 4 
    8227 Iteration cutoff | 2 
    8228  
    8229 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 6szs.pdb, chain A (#17),
    8230 sequence alignment score = 11514.7 
    8231 RMSD between 2325 pruned atom pairs is 1.300 angstroms; (across all 2903
    8232 pairs: 1.806) 
    8233  
    8234 
    8235 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8236 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8237 
    8238 > hide #!2 models
    8239 
    8240 > show #!14 models
    8241 
    8242 > show #15 models
    8243 
    8244 > show #!16 models
    8245 
    8246 > show #15,17#!14,16 surfaces
    8247 
    8248 > hide #!14 models
    8249 
    8250 > hide #!15 models
    8251 
    8252 > hide #!16 models
    8253 
    8254 > select #17/x:20@O2'
    8255 
    8256 1 atom, 1 residue, 1 model selected 
    8257 
    8258 > select add #17/z:163@CD
    8259 
    8260 2 atoms, 2 residues, 2 models selected 
    8261 
    8262 > select clear
    8263 
    8264 > hide #!17 models
    8265 
    8266 > show #!17 models
    8267 
    8268 > show #!16 models
    8269 
    8270 > show #!15 models
    8271 
    8272 > show #!14 models
    8273 
    8274 > show #!14-17 cartoons
    8275 
    8276 > hide #!14-17 surfaces
    8277 
    8278 > hide #!14-17 atoms
    8279 
    8280 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8281 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8282 
    8283 > hide #!14 models
    8284 
    8285 > show #!14 models
    8286 
    8287 > hide #!15 models
    8288 
    8289 > show #!15 models
    8290 
    8291 > hide #!16 models
    8292 
    8293 > show #!16 models
    8294 
    8295 > hide #!17 models
    8296 
    8297 > show #!17 models
    8298 
    8299 > select #16/7:72
    8300 
    8301 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8302 
    8303 > select add #14/z:75
    8304 
    8305 18 atoms, 16 bonds, 2 residues, 3 models selected 
    8306 
    8307 > select add #15/7:95
    8308 
    8309 25 atoms, 22 bonds, 3 residues, 5 models selected 
    8310 
    8311 > select add #14/z:101
    8312 
    8313 30 atoms, 26 bonds, 4 residues, 6 models selected 
    8314 
    8315 > select add #17/z:98
    8316 
    8317 35 atoms, 30 bonds, 5 residues, 7 models selected 
    8318 
    8319 > select up
    8320 
    8321 1182 atoms, 1185 bonds, 156 residues, 8 models selected 
    8322 
    8323 > select up
    8324 
    8325 11157 atoms, 11316 bonds, 1424 residues, 8 models selected 
    8326 
    8327 > delete atoms (#!14-17 & sel)
    8328 
    8329 > delete bonds (#!14-17 & sel)
    8330 
    8331 > hide #!16 models
    8332 
    8333 > show #!16 models
    8334 
    8335 > hide #!16 models
    8336 
    8337 > show #!16 models
    8338 
    8339 > hide #!16 models
    8340 
    8341 > hide #!14 models
    8342 
    8343 > show #!14 models
    8344 
    8345 > show #!16 models
    8346 
    8347 > select #17/y:14
    8348 
    8349 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8350 
    8351 > select add #14/w:16
    8352 
    8353 16 atoms, 14 bonds, 2 residues, 3 models selected 
    8354 
    8355 > select add #16/6:16
    8356 
    8357 24 atoms, 21 bonds, 3 residues, 5 models selected 
    8358 
    8359 > select add #15/6:20
    8360 
    8361 32 atoms, 28 bonds, 4 residues, 7 models selected 
    8362 
    8363 > select up
    8364 
    8365 219 atoms, 217 bonds, 27 residues, 8 models selected 
    8366 
    8367 > select up
    8368 
    8369 1441 atoms, 1463 bonds, 177 residues, 8 models selected 
    8370 
    8371 > select up
    8372 
    8373 582858 atoms, 632251 bonds, 42935 residues, 8 models selected 
    8374 
    8375 > select down
    8376 
    8377 1441 atoms, 1463 bonds, 177 residues, 228 models selected 
    8378 
    8379 > delete atoms (#!14-17 & sel)
    8380 
    8381 > delete bonds (#!14-17 & sel)
    8382 
    8383 Drag select of 8 residues 
    8384 
    8385 > select up
    8386 
    8387 6536 atoms, 7300 bonds, 306 residues, 8 models selected 
    8388 
    8389 > delete atoms (#!14-17 & sel)
    8390 
    8391 > delete bonds (#!14-17 & sel)
    8392 
    8393 > cofr frontCenter
    8394 
    8395 Drag select of 12 residues 
    8396 
    8397 > select up
    8398 
    8399 1045 atoms, 1076 bonds, 116 residues, 14 models selected 
    8400 
    8401 > select clear
    8402 
    8403 > hide #!17 models
    8404 
    8405 > show #!17 models
    8406 
    8407 > hide #!17 models
    8408 
    8409 > hide #!14 models
    8410 
    8411 > show #!14 models
    8412 
    8413 > hide #!15 models
    8414 
    8415 > hide #!16 models
    8416 
    8417 > show #!17 models
    8418 
    8419 > hide #!14 models
    8420 
    8421 > show #!14 models
    8422 
    8423 > show #!15 models
    8424 
    8425 > show #!16 models
    8426 
    8427 Drag select of 8 residues 
    8428 
    8429 > select up
    8430 
    8431 470 atoms, 522 bonds, 22 residues, 8 models selected 
    8432 
    8433 > delete atoms (#!14-17 & sel)
    8434 
    8435 > delete bonds (#!14-17 & sel)
    8436 
    8437 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    8438 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    8439 
    8440 > show #!14-17 surfaces
    8441 
    8442 > hide #!14-17 cartoons
    8443 
    8444 > select clear
    8445 
    8446 Drag select of huter_corrected.pdb_A SES surface, 8300 of 7511814 triangles,
    8447 huter_corrected.pdb_T SES surface, 744 of 111618 triangles, 5mdv.pdb_1 SES
    8448 surface, 8448 of 7440290 triangles, 5mdv.pdb_T SES surface, 1423 of 106718
    8449 triangles, 5mdw.pdb_1 SES surface, 7726 of 7452524 triangles, 5mdw.pdb_T SES
    8450 surface, 1265 of 105790 triangles, 6szs.pdb_A SES surface, 7702 of 7397828
    8451 triangles, 6szs.pdb_T SES surface, 327 of 100078 triangles 
    8452 
    8453 > select clear
    8454 
    8455 Drag select of huter_corrected.pdb_0 SES surface, huter_corrected.pdb_1 SES
    8456 surface, 48317 of 59642 triangles, huter_corrected.pdb_2 SES surface,
    8457 huter_corrected.pdb_3 SES surface, huter_corrected.pdb_4 SES surface, 29671 of
    8458 45510 triangles, huter_corrected.pdb_A SES surface, 5794380 of 7511814
    8459 triangles, huter_corrected.pdb_B SES surface, 245661 of 335962 triangles,
    8460 huter_corrected.pdb_C SES surface, 65526 of 284254 triangles,
    8461 huter_corrected.pdb_D SES surface, 214049 of 215074 triangles,
    8462 huter_corrected.pdb_E SES surface, huter_corrected.pdb_G SES surface, 119963
    8463 of 176722 triangles, huter_corrected.pdb_H SES surface, 71761 of 160858
    8464 triangles, huter_corrected.pdb_J SES surface, huter_corrected.pdb_K SES
    8465 surface, 15972 of 116972 triangles, huter_corrected.pdb_L SES surface,
    8466 huter_corrected.pdb_M SES surface, 93746 of 146412 triangles,
    8467 huter_corrected.pdb_N SES surface, huter_corrected.pdb_O SES surface, 107931
    8468 of 111970 triangles, huter_corrected.pdb_P SES surface, 56640 of 128860
    8469 triangles, huter_corrected.pdb_Q SES surface, huter_corrected.pdb_R SES
    8470 surface, huter_corrected.pdb_S SES surface, huter_corrected.pdb_T SES surface,
    8471 huter_corrected.pdb_U SES surface, huter_corrected.pdb_V SES surface,
    8472 huter_corrected.pdb_W SES surface, 81346 of 81662 triangles,
    8473 huter_corrected.pdb_X SES surface, huter_corrected.pdb_Y SES surface,
    8474 huter_corrected.pdb_Z SES surface, 5mdv.pdb_1 SES surface, 5734276 of 7440290
    8475 triangles, 5mdv.pdb_3 SES surface, 241363 of 333620 triangles, 5mdv.pdb_B SES
    8476 surface, 63341 of 272394 triangles, 5mdv.pdb_C SES surface, 209791 of 210666
    8477 triangles, 5mdv.pdb_D SES surface, 5mdv.pdb_F SES surface, 112455 of 163258
    8478 triangles, 5mdv.pdb_G SES surface, 70382 of 154882 triangles, 5mdv.pdb_H SES
    8479 surface, 18978 of 156914 triangles, 5mdv.pdb_J SES surface, 5mdv.pdb_K SES
    8480 surface, 16019 of 111072 triangles, 5mdv.pdb_L SES surface, 5mdv.pdb_M SES
    8481 surface, 92101 of 144548 triangles, 5mdv.pdb_N SES surface, 5mdv.pdb_O SES
    8482 surface, 104955 of 109580 triangles, 5mdv.pdb_P SES surface, 54443 of 125052
    8483 triangles, 5mdv.pdb_Q SES surface, 5mdv.pdb_R SES surface, 5mdv.pdb_S SES
    8484 surface, 5mdv.pdb_T SES surface, 5mdv.pdb_U SES surface, 5mdv.pdb_V SES
    8485 surface, 5mdv.pdb_W SES surface, 5mdv.pdb_X SES surface, 5mdv.pdb_Y SES
    8486 surface, 5mdv.pdb_Z SES surface, 5mdv.pdb_b SES surface, 5mdv.pdb_c SES
    8487 surface, 50615 of 60888 triangles, 5mdv.pdb_d SES surface, 5mdv.pdb_e SES
    8488 surface, 5mdv.pdb_f SES surface, 29370 of 43268 triangles, 5mdw.pdb_1 SES
    8489 surface, 5745894 of 7452524 triangles, 5mdw.pdb_3 SES surface, 242925 of
    8490 333528 triangles, 5mdw.pdb_B SES surface, 63406 of 276938 triangles,
    8491 5mdw.pdb_C SES surface, 209427 of 210272 triangles, 5mdw.pdb_D SES surface,
    8492 5mdw.pdb_F SES surface, 113489 of 166268 triangles, 5mdw.pdb_G SES surface,
    8493 71181 of 158460 triangles, 5mdw.pdb_H SES surface, 19963 of 154744 triangles,
    8494 5mdw.pdb_J SES surface, 5mdw.pdb_K SES surface, 16021 of 108636 triangles,
    8495 5mdw.pdb_L SES surface, 5mdw.pdb_M SES surface, 91699 of 144054 triangles,
    8496 5mdw.pdb_N SES surface, 5mdw.pdb_O SES surface, 105899 of 109956 triangles,
    8497 5mdw.pdb_P SES surface, 54463 of 123870 triangles, 5mdw.pdb_Q SES surface,
    8498 5mdw.pdb_R SES surface, 5mdw.pdb_S SES surface, 5mdw.pdb_T SES surface,
    8499 5mdw.pdb_U SES surface, 5mdw.pdb_V SES surface, 5mdw.pdb_W SES surface,
    8500 5mdw.pdb_X SES surface, 5mdw.pdb_Y SES surface, 5mdw.pdb_Z SES surface,
    8501 5mdw.pdb_b SES surface, 5mdw.pdb_c SES surface, 49482 of 60210 triangles,
    8502 5mdw.pdb_d SES surface, 5mdw.pdb_e SES surface, 5mdw.pdb_f SES surface, 29063
    8503 of 43246 triangles, 6szs.pdb_0 SES surface, 6szs.pdb_1 SES surface, 45408 of
    8504 55612 triangles, 6szs.pdb_2 SES surface, 6szs.pdb_3 SES surface, 6szs.pdb_4
    8505 SES surface, 29563 of 43362 triangles, 6szs.pdb_A SES surface, 5717519 of
    8506 7397828 triangles, 6szs.pdb_B SES surface, 241899 of 330280 triangles,
    8507 6szs.pdb_C SES surface, 64707 of 278468 triangles, 6szs.pdb_D SES surface,
    8508 209225 of 210540 triangles, 6szs.pdb_E SES surface, 6szs.pdb_G SES surface,
    8509 117964 of 169486 triangles, 6szs.pdb_H SES surface, 71319 of 157824 triangles,
    8510 6szs.pdb_J SES surface, 6szs.pdb_K SES surface, 15995 of 110452 triangles,
    8511 6szs.pdb_L SES surface, 6szs.pdb_M SES surface, 92265 of 145336 triangles,
    8512 6szs.pdb_N SES surface, 6szs.pdb_O SES surface, 107001 of 110850 triangles,
    8513 6szs.pdb_P SES surface, 55219 of 126578 triangles, 6szs.pdb_Q SES surface,
    8514 6szs.pdb_R SES surface, 6szs.pdb_S SES surface, 6szs.pdb_T SES surface,
    8515 6szs.pdb_U SES surface, 6szs.pdb_V SES surface, 6szs.pdb_W SES surface, 79707
    8516 of 79960 triangles, 6szs.pdb_X SES surface, 6szs.pdb_Y SES surface, 6szs.pdb_Z
    8517 SES surface 
    8518 
    8519 > select add #15/I:64@NE
    8520 
    8521 1 atom, 1 residue, 119 models selected 
    8522 
    8523 > select up
    8524 
    8525 11 atoms, 10 bonds, 1 residue, 90 models selected 
    8526 
    8527 > select clear
    8528 
    8529 Drag select of huter_corrected.pdb_0 SES surface, huter_corrected.pdb_1 SES
    8530 surface, 56443 of 59642 triangles, huter_corrected.pdb_2 SES surface,
    8531 huter_corrected.pdb_3 SES surface, huter_corrected.pdb_4 SES surface, 25384 of
    8532 45510 triangles, huter_corrected.pdb_A SES surface, 6348464 of 7511814
    8533 triangles, huter_corrected.pdb_B SES surface, 223360 of 335962 triangles,
    8534 huter_corrected.pdb_C SES surface, 202122 of 284254 triangles,
    8535 huter_corrected.pdb_D SES surface, huter_corrected.pdb_E SES surface,
    8536 huter_corrected.pdb_G SES surface, 111012 of 176722 triangles,
    8537 huter_corrected.pdb_H SES surface, 138475 of 160858 triangles,
    8538 huter_corrected.pdb_J SES surface, huter_corrected.pdb_K SES surface, 35251 of
    8539 116972 triangles, huter_corrected.pdb_L SES surface, huter_corrected.pdb_M SES
    8540 surface, 89429 of 146412 triangles, huter_corrected.pdb_N SES surface,
    8541 huter_corrected.pdb_O SES surface, 102206 of 111970 triangles,
    8542 huter_corrected.pdb_P SES surface, 84631 of 128860 triangles,
    8543 huter_corrected.pdb_Q SES surface, huter_corrected.pdb_R SES surface,
    8544 huter_corrected.pdb_S SES surface, huter_corrected.pdb_T SES surface,
    8545 huter_corrected.pdb_U SES surface, huter_corrected.pdb_V SES surface, 97747 of
    8546 99390 triangles, huter_corrected.pdb_W SES surface, huter_corrected.pdb_X SES
    8547 surface, huter_corrected.pdb_Y SES surface, huter_corrected.pdb_Z SES surface,
    8548 huter_corrected.pdb_a SES surface, 5057 of 4003356 triangles, 5mdv.pdb_1 SES
    8549 surface, 6284180 of 7440290 triangles, 5mdv.pdb_2 SES surface, 5186 of 3959882
    8550 triangles, 5mdv.pdb_3 SES surface, 219552 of 333620 triangles, 5mdv.pdb_B SES
    8551 surface, 195554 of 272394 triangles, 5mdv.pdb_C SES surface, 5mdv.pdb_D SES
    8552 surface, 5mdv.pdb_F SES surface, 104397 of 163258 triangles, 5mdv.pdb_G SES
    8553 surface, 133797 of 154882 triangles, 5mdv.pdb_H SES surface, 247 of 156914
    8554 triangles, 5mdv.pdb_J SES surface, 5mdv.pdb_K SES surface, 34737 of 111072
    8555 triangles, 5mdv.pdb_L SES surface, 5mdv.pdb_M SES surface, 88326 of 144548
    8556 triangles, 5mdv.pdb_N SES surface, 5mdv.pdb_O SES surface, 99831 of 109580
    8557 triangles, 5mdv.pdb_P SES surface, 82412 of 125052 triangles, 5mdv.pdb_Q SES
    8558 surface, 5mdv.pdb_R SES surface, 5mdv.pdb_S SES surface, 5mdv.pdb_T SES
    8559 surface, 5mdv.pdb_U SES surface, 5mdv.pdb_V SES surface, 91506 of 92456
    8560 triangles, 5mdv.pdb_W SES surface, 5mdv.pdb_X SES surface, 5mdv.pdb_Y SES
    8561 surface, 5mdv.pdb_Z SES surface, 5mdv.pdb_b SES surface, 5mdv.pdb_c SES
    8562 surface, 58005 of 60888 triangles, 5mdv.pdb_d SES surface, 5mdv.pdb_e SES
    8563 surface, 5mdv.pdb_f SES surface, 24949 of 43268 triangles, 5mdw.pdb_1 SES
    8564 surface, 6294323 of 7452524 triangles, 5mdw.pdb_2 SES surface, 5626 of 3965800
    8565 triangles, 5mdw.pdb_3 SES surface, 220828 of 333528 triangles, 5mdw.pdb_B SES
    8566 surface, 198314 of 276938 triangles, 5mdw.pdb_C SES surface, 5mdw.pdb_D SES
    8567 surface, 5mdw.pdb_F SES surface, 104938 of 166268 triangles, 5mdw.pdb_G SES
    8568 surface, 136666 of 158460 triangles, 5mdw.pdb_H SES surface, 480 of 154744
    8569 triangles, 5mdw.pdb_J SES surface, 5mdw.pdb_K SES surface, 34424 of 108636
    8570 triangles, 5mdw.pdb_L SES surface, 5mdw.pdb_M SES surface, 87562 of 144054
    8571 triangles, 5mdw.pdb_N SES surface, 5mdw.pdb_O SES surface, 100725 of 109956
    8572 triangles, 5mdw.pdb_P SES surface, 82068 of 123870 triangles, 5mdw.pdb_Q SES
    8573 surface, 5mdw.pdb_R SES surface, 5mdw.pdb_S SES surface, 5mdw.pdb_T SES
    8574 surface, 5mdw.pdb_U SES surface, 5mdw.pdb_V SES surface, 91561 of 92886
    8575 triangles, 5mdw.pdb_W SES surface, 5mdw.pdb_X SES surface, 5mdw.pdb_Y SES
    8576 surface, 5mdw.pdb_Z SES surface, 5mdw.pdb_b SES surface, 5mdw.pdb_c SES
    8577 surface, 56893 of 60210 triangles, 5mdw.pdb_d SES surface, 5mdw.pdb_e SES
    8578 surface, 5mdw.pdb_f SES surface, 24390 of 43246 triangles, 6szs.pdb_0 SES
    8579 surface, 6szs.pdb_1 SES surface, 52525 of 55612 triangles, 6szs.pdb_2 SES
    8580 surface, 6szs.pdb_3 SES surface, 6szs.pdb_4 SES surface, 25097 of 43362
    8581 triangles, 6szs.pdb_A SES surface, 6265361 of 7397828 triangles, 6szs.pdb_B
    8582 SES surface, 219594 of 330280 triangles, 6szs.pdb_C SES surface, 198204 of
    8583 278468 triangles, 6szs.pdb_D SES surface, 6szs.pdb_E SES surface, 6szs.pdb_G
    8584 SES surface, 110125 of 169486 triangles, 6szs.pdb_H SES surface, 138463 of
    8585 157824 triangles, 6szs.pdb_J SES surface, 6szs.pdb_K SES surface, 34079 of
    8586 110452 triangles, 6szs.pdb_L SES surface, 6szs.pdb_M SES surface, 88272 of
    8587 145336 triangles, 6szs.pdb_N SES surface, 6szs.pdb_O SES surface, 101898 of
    8588 110850 triangles, 6szs.pdb_P SES surface, 83126 of 126578 triangles,
    8589 6szs.pdb_Q SES surface, 6szs.pdb_R SES surface, 6szs.pdb_S SES surface,
    8590 6szs.pdb_T SES surface, 6szs.pdb_U SES surface, 6szs.pdb_V SES surface, 92031
    8591 of 93086 triangles, 6szs.pdb_W SES surface, 6szs.pdb_X SES surface, 6szs.pdb_Y
    8592 SES surface, 6szs.pdb_Z SES surface, 6szs.pdb_a SES surface, 4808 of 3953176
    8593 triangles 
    8594 
    8595 > select clear
    8596 
    8597 Drag select of huter_corrected.pdb_0 SES surface, huter_corrected.pdb_1 SES
    8598 surface, huter_corrected.pdb_2 SES surface, huter_corrected.pdb_3 SES surface,
    8599 huter_corrected.pdb_4 SES surface, 42961 of 45510 triangles,
    8600 huter_corrected.pdb_6 SES surface, 27172 of 93768 triangles,
    8601 huter_corrected.pdb_A SES surface, 6822052 of 7511814 triangles,
    8602 huter_corrected.pdb_B SES surface, huter_corrected.pdb_C SES surface, 253284
    8603 of 284254 triangles, huter_corrected.pdb_D SES surface, 212533 of 215074
    8604 triangles, huter_corrected.pdb_E SES surface, huter_corrected.pdb_F SES
    8605 surface, 104052 of 177780 triangles, huter_corrected.pdb_G SES surface, 121459
    8606 of 176722 triangles, huter_corrected.pdb_H SES surface, 158572 of 160858
    8607 triangles, huter_corrected.pdb_J SES surface, huter_corrected.pdb_K SES
    8608 surface, 31084 of 116972 triangles, huter_corrected.pdb_L SES surface,
    8609 huter_corrected.pdb_M SES surface, 141095 of 146412 triangles,
    8610 huter_corrected.pdb_N SES surface, huter_corrected.pdb_O SES surface,
    8611 huter_corrected.pdb_P SES surface, 58590 of 128860 triangles,
    8612 huter_corrected.pdb_Q SES surface, huter_corrected.pdb_R SES surface,
    8613 huter_corrected.pdb_S SES surface, huter_corrected.pdb_T SES surface,
    8614 huter_corrected.pdb_U SES surface, huter_corrected.pdb_V SES surface,
    8615 huter_corrected.pdb_W SES surface, huter_corrected.pdb_X SES surface,
    8616 huter_corrected.pdb_Y SES surface, huter_corrected.pdb_Z SES surface,
    8617 huter_corrected.pdb_a SES surface, 26129 of 4003356 triangles,
    8618 huter_corrected.pdb_f SES surface, 735 of 109412 triangles,
    8619 huter_corrected.pdb_k SES surface, 3043 of 115294 triangles, 5mdv.pdb_1 SES
    8620 surface, 6757878 of 7440290 triangles, 5mdv.pdb_2 SES surface, 26567 of
    8621 3959882 triangles, 5mdv.pdb_3 SES surface, 5mdv.pdb_B SES surface, 244000 of
    8622 272394 triangles, 5mdv.pdb_C SES surface, 208298 of 210666 triangles,
    8623 5mdv.pdb_D SES surface, 5mdv.pdb_E SES surface, 105408 of 174190 triangles,
    8624 5mdv.pdb_F SES surface, 113816 of 163258 triangles, 5mdv.pdb_G SES surface,
    8625 152842 of 154882 triangles, 5mdv.pdb_H SES surface, 41096 of 156914 triangles,
    8626 5mdv.pdb_J SES surface, 5mdv.pdb_K SES surface, 31097 of 111072 triangles,
    8627 5mdv.pdb_L SES surface, 5mdv.pdb_M SES surface, 139554 of 144548 triangles,
    8628 5mdv.pdb_N SES surface, 5mdv.pdb_O SES surface, 5mdv.pdb_P SES surface, 56243
    8629 of 125052 triangles, 5mdv.pdb_Q SES surface, 5mdv.pdb_R SES surface,
    8630 5mdv.pdb_S SES surface, 5mdv.pdb_T SES surface, 5mdv.pdb_U SES surface,
    8631 5mdv.pdb_V SES surface, 5mdv.pdb_W SES surface, 5mdv.pdb_X SES surface,
    8632 5mdv.pdb_Y SES surface, 5mdv.pdb_Z SES surface, 5mdv.pdb_a SES surface, 25686
    8633 of 90758 triangles, 5mdv.pdb_b SES surface, 5mdv.pdb_c SES surface, 5mdv.pdb_d
    8634 SES surface, 5mdv.pdb_e SES surface, 5mdv.pdb_f SES surface, 40973 of 43268
    8635 triangles, 5mdv.pdb_k SES surface, 488 of 107038 triangles, 5mdv.pdb_p SES
    8636 surface, 3803 of 119452 triangles, 5mdw.pdb_1 SES surface, 6767482 of 7452524
    8637 triangles, 5mdw.pdb_2 SES surface, 25837 of 3965800 triangles, 5mdw.pdb_3 SES
    8638 surface, 5mdw.pdb_B SES surface, 247836 of 276938 triangles, 5mdw.pdb_C SES
    8639 surface, 207964 of 210272 triangles, 5mdw.pdb_D SES surface, 5mdw.pdb_E SES
    8640 surface, 106163 of 174126 triangles, 5mdw.pdb_F SES surface, 114981 of 166268
    8641 triangles, 5mdw.pdb_G SES surface, 156335 of 158460 triangles, 5mdw.pdb_H SES
    8642 surface, 42800 of 154744 triangles, 5mdw.pdb_J SES surface, 5mdw.pdb_K SES
    8643 surface, 30731 of 108636 triangles, 5mdw.pdb_L SES surface, 5mdw.pdb_M SES
    8644 surface, 138870 of 144054 triangles, 5mdw.pdb_N SES surface, 5mdw.pdb_O SES
    8645 surface, 5mdw.pdb_P SES surface, 56420 of 123870 triangles, 5mdw.pdb_Q SES
    8646 surface, 5mdw.pdb_R SES surface, 5mdw.pdb_S SES surface, 5mdw.pdb_T SES
    8647 surface, 5mdw.pdb_U SES surface, 5mdw.pdb_V SES surface, 5mdw.pdb_W SES
    8648 surface, 5mdw.pdb_X SES surface, 5mdw.pdb_Y SES surface, 5mdw.pdb_Z SES
    8649 surface, 5mdw.pdb_a SES surface, 25588 of 91434 triangles, 5mdw.pdb_b SES
    8650 surface, 5mdw.pdb_c SES surface, 5mdw.pdb_d SES surface, 5mdw.pdb_e SES
    8651 surface, 5mdw.pdb_f SES surface, 40382 of 43246 triangles, 5mdw.pdb_k SES
    8652 surface, 316 of 109036 triangles, 5mdw.pdb_p SES surface, 2351 of 119092
    8653 triangles, 6szs.pdb_0 SES surface, 6szs.pdb_1 SES surface, 6szs.pdb_2 SES
    8654 surface, 6szs.pdb_3 SES surface, 6szs.pdb_4 SES surface, 40799 of 43362
    8655 triangles, 6szs.pdb_5 SES surface, 24899 of 89136 triangles, 6szs.pdb_A SES
    8656 surface, 6719785 of 7397828 triangles, 6szs.pdb_B SES surface, 6szs.pdb_C SES
    8657 surface, 249325 of 278468 triangles, 6szs.pdb_D SES surface, 207861 of 210540
    8658 triangles, 6szs.pdb_E SES surface, 6szs.pdb_F SES surface, 102430 of 168170
    8659 triangles, 6szs.pdb_G SES surface, 120195 of 169486 triangles, 6szs.pdb_H SES
    8660 surface, 156380 of 157824 triangles, 6szs.pdb_J SES surface, 6szs.pdb_K SES
    8661 surface, 30360 of 110452 triangles, 6szs.pdb_L SES surface, 6szs.pdb_M SES
    8662 surface, 141214 of 145336 triangles, 6szs.pdb_N SES surface, 6szs.pdb_O SES
    8663 surface, 6szs.pdb_P SES surface, 56820 of 126578 triangles, 6szs.pdb_Q SES
    8664 surface, 6szs.pdb_R SES surface, 6szs.pdb_S SES surface, 6szs.pdb_T SES
    8665 surface, 6szs.pdb_U SES surface, 6szs.pdb_V SES surface, 6szs.pdb_W SES
    8666 surface, 6szs.pdb_X SES surface, 6szs.pdb_Y SES surface, 6szs.pdb_Z SES
    8667 surface, 6szs.pdb_a SES surface, 27874 of 3953176 triangles, 6szs.pdb_f SES
    8668 surface, 665 of 100246 triangles, 6szs.pdb_k SES surface, 3596 of 115982
    8669 triangles 
    8670 
    8671 > color
    8672 > #14.2-33,38,43#15.1-3,8-14,16-38,43,48#16.2-4,9-15,17-39,44,49#17.1-32,37,42
    8673 > dark gray
    8674 
    8675 > select clear
    8676 
    8677 > select #16/I:44@CA
    8678 
    8679 1 atom, 1 residue, 1 model selected 
    8680 Drag select of huter_corrected.pdb_A SES surface, 44897 of 7511814 triangles,
    8681 huter_corrected.pdb_C SES surface, 5725 of 284254 triangles,
    8682 huter_corrected.pdb_H SES surface, 10182 of 160858 triangles,
    8683 huter_corrected.pdb_X SES surface, 10537 of 91202 triangles, 5mdv.pdb_1 SES
    8684 surface, 47044 of 7440290 triangles, 5mdv.pdb_B SES surface, 5535 of 272394
    8685 triangles, 5mdv.pdb_G SES surface, 9715 of 154882 triangles, 5mdv.pdb_I SES
    8686 surface, 13443 of 150166 triangles, 5mdv.pdb_X SES surface, 10773 of 87410
    8687 triangles, 5mdw.pdb_1 SES surface, 47371 of 7452524 triangles, 5mdw.pdb_B SES
    8688 surface, 5835 of 276938 triangles, 5mdw.pdb_G SES surface, 9748 of 158460
    8689 triangles, 5mdw.pdb_I SES surface, 12302 of 155174 triangles, 5mdw.pdb_X SES
    8690 surface, 11012 of 87482 triangles, 6szs.pdb_A SES surface, 47846 of 7397828
    8691 triangles, 6szs.pdb_C SES surface, 5460 of 278468 triangles, 6szs.pdb_H SES
    8692 surface, 10126 of 157824 triangles, 6szs.pdb_X SES surface, 9870 of 88422
    8693 triangles 
    8694 
    8695 > select clear
    8696 
    8697 Drag select of huter_corrected.pdb_A SES surface, 28903 of 7511814 triangles,
    8698 huter_corrected.pdb_C SES surface, 395 of 284254 triangles,
    8699 huter_corrected.pdb_H SES surface, 10201 of 160858 triangles,
    8700 huter_corrected.pdb_X SES surface, 2071 of 91202 triangles, 5mdv.pdb_1 SES
    8701 surface, 28845 of 7440290 triangles, 5mdv.pdb_B SES surface, 341 of 272394
    8702 triangles, 5mdv.pdb_G SES surface, 10295 of 154882 triangles, 5mdv.pdb_I SES
    8703 surface, 6488 of 150166 triangles, 5mdv.pdb_X SES surface, 1880 of 87410
    8704 triangles, 5mdw.pdb_1 SES surface, 28654 of 7452524 triangles, 5mdw.pdb_B SES
    8705 surface, 395 of 276938 triangles, 5mdw.pdb_G SES surface, 10251 of 158460
    8706 triangles, 5mdw.pdb_I SES surface, 6574 of 155174 triangles, 5mdw.pdb_X SES
    8707 surface, 1986 of 87482 triangles, 6szs.pdb_A SES surface, 28829 of 7397828
    8708 triangles, 6szs.pdb_C SES surface, 277 of 278468 triangles, 6szs.pdb_H SES
    8709 surface, 10853 of 157824 triangles, 6szs.pdb_X SES surface, 1601 of 88422
    8710 triangles 
    8711 
    8712 > select clear
    8713 
    8714 > hide #!17 models
    8715 
    8716 > hide #!16 models
    8717 
    8718 > hide #!15 models
    8719 
    8720 > hide #!14 models
    8721 
    8722 > show #!14 models
    8723 
    8724 > hide #!14 models
    8725 
    8726 > show #!15 models
    8727 
    8728 > hide #!15 models
    8729 
    8730 > show #!16 models
    8731 
    8732 > show #!15 models
    8733 
    8734 Drag select of 5mdv.pdb_1 SES surface, 20481 of 7440290 triangles, 5mdv.pdb_B
    8735 SES surface, 170 of 272394 triangles, 5mdv.pdb_G SES surface, 5999 of 154882
    8736 triangles, 5mdv.pdb_I SES surface, 6469 of 150166 triangles, 5mdv.pdb_X SES
    8737 surface, 6875 of 87410 triangles, 5mdw.pdb_1 SES surface, 20209 of 7452524
    8738 triangles, 5mdw.pdb_B SES surface, 175 of 276938 triangles, 5mdw.pdb_G SES
    8739 surface, 5923 of 158460 triangles, 5mdw.pdb_I SES surface, 6228 of 155174
    8740 triangles, 5mdw.pdb_X SES surface, 6904 of 87482 triangles 
    8741 
    8742 > select clear
    8743 
    8744 > hide #!16 models
    8745 
    8746 > select #15/I:44@NZ
    8747 
    8748 1 atom, 1 residue, 1 model selected 
    8749 
    8750 > select up
    8751 
    8752 9 atoms, 8 bonds, 1 residue, 2 models selected 
    8753 
    8754 > select up
    8755 
    8756 110 atoms, 111 bonds, 14 residues, 2 models selected 
    8757 
    8758 > select up
    8759 
    8760 984 atoms, 998 bonds, 135 residues, 2 models selected 
    8761 
    8762 > color (#!15 & sel) dark gray
    8763 
    8764 > select clear
    8765 
    8766 > show #!16 models
    8767 
    8768 > hide #!15 models
    8769 
    8770 > select #16/I:68@CE1
    8771 
    8772 1 atom, 1 residue, 1 model selected 
    8773 
    8774 > select up
    8775 
    8776 11 atoms, 11 bonds, 1 residue, 2 models selected 
    8777 
    8778 > select up
    8779 
    8780 211 atoms, 217 bonds, 27 residues, 2 models selected 
    8781 
    8782 > select up
    8783 
    8784 984 atoms, 998 bonds, 135 residues, 2 models selected 
    8785 
    8786 > color (#!16 & sel) dark gray
    8787 
    8788 > select clear
    8789 
    8790 > show #!17 models
    8791 
    8792 > show #!15 models
    8793 
    8794 > show #!14 models
    8795 
    8796 Drag select of huter_corrected.pdb_6 SES surface, 14326 of 93768 triangles,
    8797 huter_corrected.pdb_A SES surface, 152118 of 7511814 triangles,
    8798 huter_corrected.pdb_C SES surface, 819 of 284254 triangles,
    8799 huter_corrected.pdb_H SES surface, 23978 of 160858 triangles,
    8800 huter_corrected.pdb_a SES surface, 2780682 of 4003356 triangles,
    8801 huter_corrected.pdb_b SES surface, huter_corrected.pdb_c SES surface,
    8802 huter_corrected.pdb_d SES surface, huter_corrected.pdb_e SES surface,
    8803 huter_corrected.pdb_f SES surface, 109411 of 109412 triangles,
    8804 huter_corrected.pdb_g SES surface, huter_corrected.pdb_h SES surface,
    8805 huter_corrected.pdb_i SES surface, huter_corrected.pdb_j SES surface,
    8806 huter_corrected.pdb_k SES surface, huter_corrected.pdb_l SES surface, 86219 of
    8807 141304 triangles, huter_corrected.pdb_m SES surface, 67002 of 126116
    8808 triangles, huter_corrected.pdb_n SES surface, huter_corrected.pdb_o SES
    8809 surface, 100753 of 102000 triangles, huter_corrected.pdb_p SES surface, 84675
    8810 of 87966 triangles, huter_corrected.pdb_q SES surface, 69176 of 92162
    8811 triangles, huter_corrected.pdb_r SES surface, huter_corrected.pdb_s SES
    8812 surface, 44202 of 96886 triangles, huter_corrected.pdb_u SES surface,
    8813 5mdv.pdb_1 SES surface, 146360 of 7440290 triangles, 5mdv.pdb_2 SES surface,
    8814 2741474 of 3959882 triangles, 5mdv.pdb_B SES surface, 390 of 272394 triangles,
    8815 5mdv.pdb_G SES surface, 22958 of 154882 triangles, 5mdv.pdb_a SES surface,
    8816 13786 of 90758 triangles, 5mdv.pdb_g SES surface, 5mdv.pdb_h SES surface,
    8817 5mdv.pdb_i SES surface, 5mdv.pdb_j SES surface, 5mdv.pdb_k SES surface, 106852
    8818 of 107038 triangles, 5mdv.pdb_l SES surface, 5mdv.pdb_m SES surface,
    8819 5mdv.pdb_n SES surface, 5mdv.pdb_o SES surface, 5mdv.pdb_p SES surface,
    8820 5mdv.pdb_q SES surface, 82902 of 133776 triangles, 5mdv.pdb_r SES surface,
    8821 62477 of 124820 triangles, 5mdv.pdb_s SES surface, 5mdv.pdb_t SES surface,
    8822 95949 of 97168 triangles, 5mdv.pdb_u SES surface, 82709 of 85776 triangles,
    8823 5mdv.pdb_v SES surface, 71348 of 93224 triangles, 5mdv.pdb_w SES surface,
    8824 5mdv.pdb_x SES surface, 42483 of 94056 triangles, 5mdv.pdb_z SES surface,
    8825 5mdw.pdb_1 SES surface, 147261 of 7452524 triangles, 5mdw.pdb_2 SES surface,
    8826 2747061 of 3965800 triangles, 5mdw.pdb_B SES surface, 476 of 276938 triangles,
    8827 5mdw.pdb_G SES surface, 23360 of 158460 triangles, 5mdw.pdb_a SES surface,
    8828 14095 of 91434 triangles, 5mdw.pdb_g SES surface, 5mdw.pdb_h SES surface,
    8829 5mdw.pdb_i SES surface, 5mdw.pdb_j SES surface, 5mdw.pdb_k SES surface, 108913
    8830 of 109036 triangles, 5mdw.pdb_l SES surface, 5mdw.pdb_m SES surface,
    8831 5mdw.pdb_n SES surface, 5mdw.pdb_o SES surface, 5mdw.pdb_p SES surface,
    8832 5mdw.pdb_q SES surface, 81907 of 133904 triangles, 5mdw.pdb_r SES surface,
    8833 62034 of 125246 triangles, 5mdw.pdb_s SES surface, 5mdw.pdb_t SES surface,
    8834 95483 of 96506 triangles, 5mdw.pdb_u SES surface, 83108 of 86502 triangles,
    8835 5mdw.pdb_v SES surface, 70571 of 92660 triangles, 5mdw.pdb_w SES surface,
    8836 5mdw.pdb_x SES surface, 39146 of 92976 triangles, 5mdw.pdb_z SES surface,
    8837 6szs.pdb_5 SES surface, 12877 of 89136 triangles, 6szs.pdb_A SES surface,
    8838 133699 of 7397828 triangles, 6szs.pdb_C SES surface, 455 of 278468 triangles,
    8839 6szs.pdb_H SES surface, 21567 of 157824 triangles, 6szs.pdb_a SES surface,
    8840 2752479 of 3953176 triangles, 6szs.pdb_b SES surface, 6szs.pdb_c SES surface,
    8841 6szs.pdb_d SES surface, 6szs.pdb_e SES surface, 6szs.pdb_f SES surface, 100020
    8842 of 100246 triangles, 6szs.pdb_g SES surface, 6szs.pdb_h SES surface,
    8843 6szs.pdb_i SES surface, 6szs.pdb_j SES surface, 6szs.pdb_k SES surface, 115944
    8844 of 115982 triangles, 6szs.pdb_l SES surface, 84200 of 134408 triangles,
    8845 6szs.pdb_m SES surface, 61383 of 120740 triangles, 6szs.pdb_n SES surface,
    8846 6szs.pdb_o SES surface, 93852 of 95042 triangles, 6szs.pdb_p SES surface,
    8847 85274 of 88464 triangles, 6szs.pdb_q SES surface, 67340 of 89452 triangles,
    8848 6szs.pdb_r SES surface, 6szs.pdb_s SES surface, 43946 of 93284 triangles,
    8849 6szs.pdb_u SES surface 
    8850 
    8851 > select clear
    8852 
    8853 Drag select of huter_corrected.pdb_A SES surface, 46 of 7511814 triangles,
    8854 huter_corrected.pdb_a SES surface, 1370282 of 4003356 triangles,
    8855 huter_corrected.pdb_b SES surface, huter_corrected.pdb_c SES surface, 208185
    8856 of 209098 triangles, huter_corrected.pdb_d SES surface, 206388 of 209444
    8857 triangles, huter_corrected.pdb_e SES surface, huter_corrected.pdb_f SES
    8858 surface, 22307 of 109412 triangles, huter_corrected.pdb_g SES surface, 89037
    8859 of 158486 triangles, huter_corrected.pdb_h SES surface, 123843 of 123984
    8860 triangles, huter_corrected.pdb_i SES surface, 131541 of 143286 triangles,
    8861 huter_corrected.pdb_j SES surface, 117834 of 119770 triangles,
    8862 huter_corrected.pdb_k SES surface, 9781 of 115294 triangles,
    8863 huter_corrected.pdb_l SES surface, 189 of 141304 triangles,
    8864 huter_corrected.pdb_n SES surface, 80956 of 127810 triangles,
    8865 huter_corrected.pdb_o SES surface, 15188 of 102000 triangles,
    8866 huter_corrected.pdb_p SES surface, 21529 of 87966 triangles,
    8867 huter_corrected.pdb_q SES surface, 2230 of 92162 triangles,
    8868 huter_corrected.pdb_r SES surface, 52542 of 76018 triangles,
    8869 huter_corrected.pdb_u SES surface, 59267 of 95002 triangles, 5mdv.pdb_2 SES
    8870 surface, 1348553 of 3959882 triangles, 5mdv.pdb_g SES surface, 5mdv.pdb_h SES
    8871 surface, 201975 of 203036 triangles, 5mdv.pdb_i SES surface, 199138 of 201386
    8872 triangles, 5mdv.pdb_j SES surface, 137505 of 137596 triangles, 5mdv.pdb_k SES
    8873 surface, 24615 of 107038 triangles, 5mdv.pdb_l SES surface, 83648 of 152700
    8874 triangles, 5mdv.pdb_m SES surface, 120176 of 120284 triangles, 5mdv.pdb_n SES
    8875 surface, 120507 of 132604 triangles, 5mdv.pdb_o SES surface, 107565 of 109548
    8876 triangles, 5mdv.pdb_p SES surface, 7940 of 119452 triangles, 5mdv.pdb_q SES
    8877 surface, 98 of 133776 triangles, 5mdv.pdb_s SES surface, 80107 of 122606
    8878 triangles, 5mdv.pdb_t SES surface, 15114 of 97168 triangles, 5mdv.pdb_u SES
    8879 surface, 19034 of 85776 triangles, 5mdv.pdb_v SES surface, 2745 of 93224
    8880 triangles, 5mdv.pdb_w SES surface, 49182 of 73420 triangles, 5mdv.pdb_z SES
    8881 surface, 68781 of 105428 triangles, 5mdw.pdb_2 SES surface, 1339375 of 3965800
    8882 triangles, 5mdw.pdb_g SES surface, 5mdw.pdb_h SES surface, 201223 of 202820
    8883 triangles, 5mdw.pdb_i SES surface, 200720 of 203256 triangles, 5mdw.pdb_j SES
    8884 surface, 137569 of 137766 triangles, 5mdw.pdb_k SES surface, 25565 of 109036
    8885 triangles, 5mdw.pdb_l SES surface, 83803 of 151702 triangles, 5mdw.pdb_m SES
    8886 surface, 119055 of 119168 triangles, 5mdw.pdb_n SES surface, 120805 of 133036
    8887 triangles, 5mdw.pdb_o SES surface, 108443 of 110766 triangles, 5mdw.pdb_p SES
    8888 surface, 9258 of 119092 triangles, 5mdw.pdb_q SES surface, 119 of 133904
    8889 triangles, 5mdw.pdb_s SES surface, 76674 of 121474 triangles, 5mdw.pdb_t SES
    8890 surface, 14592 of 96506 triangles, 5mdw.pdb_u SES surface, 19248 of 86502
    8891 triangles, 5mdw.pdb_v SES surface, 2724 of 92660 triangles, 5mdw.pdb_w SES
    8892 surface, 51086 of 74906 triangles, 5mdw.pdb_z SES surface, 69204 of 105044
    8893 triangles, 6szs.pdb_a SES surface, 1365192 of 3953176 triangles, 6szs.pdb_b
    8894 SES surface, 6szs.pdb_c SES surface, 201278 of 201842 triangles, 6szs.pdb_d
    8895 SES surface, 198461 of 200376 triangles, 6szs.pdb_e SES surface, 139918 of
    8896 140070 triangles, 6szs.pdb_f SES surface, 18099 of 100246 triangles,
    8897 6szs.pdb_g SES surface, 81785 of 147750 triangles, 6szs.pdb_h SES surface,
    8898 119973 of 120106 triangles, 6szs.pdb_i SES surface, 121684 of 133526
    8899 triangles, 6szs.pdb_j SES surface, 111063 of 113196 triangles, 6szs.pdb_k SES
    8900 surface, 7643 of 115982 triangles, 6szs.pdb_l SES surface, 168 of 134408
    8901 triangles, 6szs.pdb_n SES surface, 83788 of 126616 triangles, 6szs.pdb_o SES
    8902 surface, 14123 of 95042 triangles, 6szs.pdb_p SES surface, 19631 of 88464
    8903 triangles, 6szs.pdb_q SES surface, 2506 of 89452 triangles, 6szs.pdb_r SES
    8904 surface, 49601 of 74634 triangles, 6szs.pdb_u SES surface, 67133 of 104534
    8905 triangles 
    8906 
    8907 > select clear
    8908 
    8909 > select #14/a:999@O2
    8910 
    8911 1 atom, 1 residue, 1 model selected 
    8912 
    8913 > select up
    8914 
    8915 20 atoms, 21 bonds, 1 residue, 2 models selected 
    8916 
    8917 > select up
    8918 
    8919 33016 atoms, 36967 bonds, 1539 residues, 2 models selected 
    8920 
    8921 > select clear
    8922 
    8923 Drag select of huter_corrected.pdb_a SES surface, 687710 of 4003356 triangles,
    8924 huter_corrected.pdb_b SES surface, huter_corrected.pdb_c SES surface, 190062
    8925 of 209098 triangles, huter_corrected.pdb_d SES surface, 142449 of 209444
    8926 triangles, huter_corrected.pdb_e SES surface, 113519 of 142936 triangles,
    8927 huter_corrected.pdb_g SES surface, 32225 of 158486 triangles,
    8928 huter_corrected.pdb_h SES surface, 100717 of 123984 triangles,
    8929 huter_corrected.pdb_i SES surface, 117465 of 143286 triangles,
    8930 huter_corrected.pdb_j SES surface, 103687 of 119770 triangles,
    8931 huter_corrected.pdb_n SES surface, 35753 of 127810 triangles,
    8932 huter_corrected.pdb_o SES surface, 19 of 102000 triangles,
    8933 huter_corrected.pdb_p SES surface, 868 of 87966 triangles,
    8934 huter_corrected.pdb_r SES surface, 16870 of 76018 triangles,
    8935 huter_corrected.pdb_u SES surface, 17066 of 95002 triangles, 5mdv.pdb_2 SES
    8936 surface, 685123 of 3959882 triangles, 5mdv.pdb_g SES surface, 5mdv.pdb_h SES
    8937 surface, 183698 of 203036 triangles, 5mdv.pdb_i SES surface, 134469 of 201386
    8938 triangles, 5mdv.pdb_j SES surface, 108848 of 137596 triangles, 5mdv.pdb_k SES
    8939 surface, 1375 of 107038 triangles, 5mdv.pdb_l SES surface, 28609 of 152700
    8940 triangles, 5mdv.pdb_m SES surface, 97767 of 120284 triangles, 5mdv.pdb_n SES
    8941 surface, 107108 of 132604 triangles, 5mdv.pdb_o SES surface, 93893 of 109548
    8942 triangles, 5mdv.pdb_s SES surface, 35070 of 122606 triangles, 5mdv.pdb_u SES
    8943 surface, 878 of 85776 triangles, 5mdv.pdb_w SES surface, 16047 of 73420
    8944 triangles, 5mdv.pdb_z SES surface, 28093 of 105428 triangles, 5mdw.pdb_2 SES
    8945 surface, 680427 of 3965800 triangles, 5mdw.pdb_g SES surface, 5mdw.pdb_h SES
    8946 surface, 182344 of 202820 triangles, 5mdw.pdb_i SES surface, 134496 of 203256
    8947 triangles, 5mdw.pdb_j SES surface, 107988 of 137766 triangles, 5mdw.pdb_k SES
    8948 surface, 1534 of 109036 triangles, 5mdw.pdb_l SES surface, 29237 of 151702
    8949 triangles, 5mdw.pdb_m SES surface, 96902 of 119168 triangles, 5mdw.pdb_n SES
    8950 surface, 107445 of 133036 triangles, 5mdw.pdb_o SES surface, 94497 of 110766
    8951 triangles, 5mdw.pdb_s SES surface, 33781 of 121474 triangles, 5mdw.pdb_u SES
    8952 surface, 934 of 86502 triangles, 5mdw.pdb_w SES surface, 16901 of 74906
    8953 triangles, 5mdw.pdb_z SES surface, 28295 of 105044 triangles, 6szs.pdb_a SES
    8954 surface, 685478 of 3953176 triangles, 6szs.pdb_b SES surface, 6szs.pdb_c SES
    8955 surface, 182709 of 201842 triangles, 6szs.pdb_d SES surface, 134225 of 200376
    8956 triangles, 6szs.pdb_e SES surface, 112532 of 140070 triangles, 6szs.pdb_f SES
    8957 surface, 333 of 100246 triangles, 6szs.pdb_g SES surface, 27540 of 147750
    8958 triangles, 6szs.pdb_h SES surface, 97043 of 120106 triangles, 6szs.pdb_i SES
    8959 surface, 106795 of 133526 triangles, 6szs.pdb_j SES surface, 97631 of 113196
    8960 triangles, 6szs.pdb_n SES surface, 36183 of 126616 triangles, 6szs.pdb_p SES
    8961 surface, 698 of 88464 triangles, 6szs.pdb_r SES surface, 16085 of 74634
    8962 triangles, 6szs.pdb_u SES surface, 26376 of 104534 triangles 
    8963 
    8964 > ui tool show "Color Actions"
    8965 
    8966 > color sel lemon chiffon
    8967 
    8968 > select clear
    8969 
    8970 Drag select of huter_corrected.pdb_a SES surface, 10544 of 4003356 triangles,
    8971 huter_corrected.pdb_l SES surface, 6384 of 141304 triangles,
    8972 huter_corrected.pdb_q SES surface, 6961 of 92162 triangles, 5mdv.pdb_2 SES
    8973 surface, 10722 of 3959882 triangles, 5mdv.pdb_q SES surface, 5341 of 133776
    8974 triangles, 5mdv.pdb_v SES surface, 7426 of 93224 triangles, 5mdw.pdb_2 SES
    8975 surface, 10515 of 3965800 triangles, 5mdw.pdb_q SES surface, 4922 of 133904
    8976 triangles, 5mdw.pdb_v SES surface, 7255 of 92660 triangles, 6szs.pdb_a SES
    8977 surface, 10312 of 3953176 triangles, 6szs.pdb_l SES surface, 5610 of 134408
    8978 triangles, 6szs.pdb_q SES surface, 5725 of 89452 triangles 
    8979 
    8980 > select clear
    8981 
    8982 > select #16/x:26@CA
    8983 
    8984 1 atom, 1 residue, 1 model selected 
    8985 
    8986 > select add #14/s:23@CB
    8987 
    8988 2 atoms, 2 residues, 3 models selected 
    8989 
    8990 > select add #16/q:37@CB
    8991 
    8992 3 atoms, 3 residues, 4 models selected 
    8993 
    8994 > select add #14/l:35@NH1
    8995 
    8996 4 atoms, 4 residues, 5 models selected 
    8997 
    8998 > select add #16/q:75@NE2
    8999 
    9000 5 atoms, 5 residues, 6 models selected 
    9001 
    9002 > select add #14/m:53@OD1
    9003 
    9004 6 atoms, 6 residues, 6 models selected 
    9005 
    9006 > select add #16/r:55@CG2
    9007 
    9008 7 atoms, 7 residues, 7 models selected 
    9009 
    9010 > select add #16/y:45@CB
    9011 
    9012 8 atoms, 8 residues, 8 models selected 
    9013 
    9014 > select add #14/t:48@CE
    9015 
    9016 9 atoms, 9 residues, 9 models selected 
    9017 
    9018 > select add #15/v:50@ND2
    9019 
    9020 10 atoms, 10 residues, 11 models selected 
    9021 
    9022 > select add #17/q:52@O
    9023 
    9024 11 atoms, 11 residues, 13 models selected 
    9025 
    9026 > select add #17/o:76@CB
    9027 
    9028 12 atoms, 12 residues, 14 models selected 
    9029 
    9030 > select add #15/t:79@CG2
    9031 
    9032 13 atoms, 13 residues, 15 models selected 
    9033 
    9034 > select add #14/f:73@OE1
    9035 
    9036 14 atoms, 14 residues, 16 models selected 
    9037 
    9038 > select up
    9039 
    9040 107 atoms, 93 bonds, 14 residues, 17 models selected 
    9041 
    9042 > select up
    9043 
    9044 1142 atoms, 1140 bonds, 144 residues, 17 models selected 
    9045 
    9046 > select up
    9047 
    9048 9870 atoms, 10012 bonds, 1245 residues, 17 models selected 
    9049 
    9050 > select up
    9051 
    9052 574411 atoms, 622966 bonds, 42430 residues, 17 models selected 
    9053 
    9054 > select down
    9055 
    9056 9870 atoms, 10012 bonds, 1245 residues, 216 models selected 
    9057 
    9058 > color sel lemon chiffon
    9059 
    9060 > select clear
    9061 
    9062 > hide #!17 models
    9063 
    9064 > show #!17 models
    9065 
    9066 > hide #!16 models
    9067 
    9068 > show #!16 models
    9069 
    9070 > hide #!16 models
    9071 
    9072 > hide #!15 models
    9073 
    9074 > hide #!14 models
    9075 
    9076 > select #17/l:37@CB
    9077 
    9078 1 atom, 1 residue, 1 model selected 
    9079 
    9080 > select add #17/s:24@O
    9081 
    9082 2 atoms, 2 residues, 2 models selected 
    9083 
    9084 > select add #17/m:62@CE
    9085 
    9086 3 atoms, 3 residues, 2 models selected 
    9087 
    9088 > select add #17/t:8@NZ
    9089 
    9090 4 atoms, 4 residues, 4 models selected 
    9091 
    9092 > select add #17/k:105@CZ
    9093 
    9094 5 atoms, 5 residues, 5 models selected 
    9095 
    9096 > show #!2 models
    9097 
    9098 > hide #!2 models
    9099 
    9100 > select up
    9101 
    9102 45 atoms, 41 bonds, 5 residues, 6 models selected 
    9103 
    9104 > select up
    9105 
    9106 588 atoms, 590 bonds, 73 residues, 6 models selected 
    9107 
    9108 > select up
    9109 
    9110 4048 atoms, 4110 bonds, 523 residues, 6 models selected 
    9111 
    9112 > color sel lemon chiffon
    9113 
    9114 > select clear
    9115 
    9116 > hide #!17 models
    9117 
    9118 > show #!16 models
    9119 
    9120 > select add #16/t:26@CB
    9121 
    9122 1 atom, 1 residue, 1 model selected 
    9123 
    9124 > select add #16/v:77@CA
    9125 
    9126 2 atoms, 2 residues, 2 models selected 
    9127 
    9128 > select up
    9129 
    9130 20 atoms, 18 bonds, 2 residues, 3 models selected 
    9131 
    9132 > select up
    9133 
    9134 239 atoms, 242 bonds, 30 residues, 3 models selected 
    9135 
    9136 > select up
    9137 
    9138 1362 atoms, 1379 bonds, 168 residues, 3 models selected 
    9139 
    9140 > color sel lemon chiffon
    9141 
    9142 > select clear
    9143 
    9144 > show #!15 models
    9145 
    9146 > hide #!16 models
    9147 
    9148 > select add #15/y:49@CE
    9149 
    9150 1 atom, 1 residue, 1 model selected 
    9151 
    9152 > select add #15/q:37@CG1
    9153 
    9154 2 atoms, 2 residues, 2 models selected 
    9155 
    9156 > select add #15/x:23@CG1
    9157 
    9158 3 atoms, 3 residues, 3 models selected 
    9159 
    9160 > select add #15/r:55@CG2
    9161 
    9162 4 atoms, 4 residues, 4 models selected 
    9163 
    9164 > select add #15/p:104@CA
    9165 
    9166 5 atoms, 5 residues, 5 models selected 
    9167 
    9168 > select up
    9169 
    9170 34 atoms, 29 bonds, 5 residues, 6 models selected 
    9171 
    9172 > select up
    9173 
    9174 496 atoms, 496 bonds, 63 residues, 6 models selected 
    9175 
    9176 > select up
    9177 
    9178 4066 atoms, 4128 bonds, 525 residues, 6 models selected 
    9179 
    9180 > color sel lemon chiffon
    9181 
    9182 > select clear
    9183 
    9184 > show #!14 models
    9185 
    9186 > hide #!15 models
    9187 
    9188 > select add #14/q:51@CA
    9189 
    9190 1 atom, 1 residue, 1 model selected 
    9191 
    9192 > select add #14/k:15@CG2
    9193 
    9194 2 atoms, 2 residues, 2 models selected 
    9195 
    9196 > select up
    9197 
    9198 16 atoms, 14 bonds, 2 residues, 3 models selected 
    9199 
    9200 > select up
    9201 
    9202 114 atoms, 112 bonds, 15 residues, 3 models selected 
    9203 
    9204 > select up
    9205 
    9206 1517 atoms, 1542 bonds, 196 residues, 3 models selected 
    9207 
    9208 > color sel lemon chiffon
    9209 
    9210 > select clear
    9211 
    9212 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    9213 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    9214 
    9215 > open C:\Users\claud\Downloads\5mgp-pdb-bundle.tar\5mgp-pdb-
    9216 > bundle\huter_corrected.pdb format pdb
    9217 
    9218 Summary of feedback from opening C:\Users\claud\Downloads\5mgp-pdb-
    9219 bundle.tar\5mgp-pdb-bundle\huter_corrected.pdb 
    9220 --- 
    9221 warning | Ignored bad PDB record found on line 147218 
    9222 END 
    9223  
    9224 Chain information for huter_corrected.pdb #1 
    9225 --- 
    9226 Chain | Description 
    9227 0 | No description available 
    9228 1 | No description available 
    9229 2 | No description available 
    9230 3 | No description available 
    9231 4 | No description available 
    9232 6 | No description available 
    9233 A | No description available 
    9234 B | No description available 
    9235 C | No description available 
    9236 D | No description available 
    9237 E | No description available 
    9238 F | No description available 
    9239 G | No description available 
    9240 H | No description available 
    9241 J | No description available 
    9242 K | No description available 
    9243 L | No description available 
    9244 M | No description available 
    9245 N | No description available 
    9246 O | No description available 
    9247 P | No description available 
    9248 Q | No description available 
    9249 R | No description available 
    9250 S | No description available 
    9251 T | No description available 
    9252 U | No description available 
    9253 V | No description available 
    9254 W | No description available 
    9255 X | No description available 
    9256 Y | No description available 
    9257 Z | No description available 
    9258 a | No description available 
    9259 b | No description available 
    9260 c | No description available 
    9261 d | No description available 
    9262 e | No description available 
    9263 f | No description available 
    9264 g | No description available 
    9265 h | No description available 
    9266 i | No description available 
    9267 j | No description available 
    9268 k | No description available 
    9269 l | No description available 
    9270 m | No description available 
    9271 n | No description available 
    9272 o | No description available 
    9273 p | No description available 
    9274 q | No description available 
    9275 r | No description available 
    9276 s | No description available 
    9277 t | No description available 
    9278 u | No description available 
    9279 v | No description available 
    9280 w | No description available 
    9281 x | No description available 
    9282 z | No description available 
    9283  
    9284 
    9285 > ui tool show Matchmaker
    9286 
    9287 > matchmaker #1/A to #2/1 pairing ss matrix Nucleic
    9288 
    9289 Parameters 
    9290 --- 
    9291 Chain pairing | ss 
    9292 Alignment algorithm | Needleman-Wunsch 
    9293 Similarity matrix | Nucleic 
    9294 SS fraction | 0.3 
    9295 Gap open (HH/SS/other) | 18/18/6 
    9296 Gap extend | 1 
    9297 SS matrix |  |  | H | S | O 
    9298 ---|---|---|--- 
    9299 H | 6 | -9 | -6 
    9300 S |  | 6 | -6 
    9301 O |  |  | 4 
    9302 Iteration cutoff | 2 
    9303  
    9304 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with huter_corrected.pdb, chain A
    9305 (#1), sequence alignment score = 11493.7 
    9306 RMSD between 2391 pruned atom pairs is 1.238 angstroms; (across all 2900
    9307 pairs: 1.846) 
    9308  
    9309 
    9310 > hide #!14 models
    9311 
    9312 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    9313 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    9314 
    9315 > show #!1 cartoons
    9316 
    9317 > hide #!1 atoms
    9318 
    9319 > select #1/z:129
    9320 
    9321 12 atoms, 12 bonds, 1 residue, 1 model selected 
    9322 
    9323 > select add #1/x:10
    9324 
    9325 35 atoms, 37 bonds, 2 residues, 1 model selected 
    9326 
    9327 > select add #1/w:24
    9328 
    9329 43 atoms, 44 bonds, 3 residues, 1 model selected 
    9330 
    9331 > select add #1/v:16
    9332 
    9333 63 atoms, 65 bonds, 4 residues, 1 model selected 
    9334 
    9335 > select up
    9336 
    9337 1849 atoms, 2056 bonds, 92 residues, 1 model selected 
    9338 
    9339 > select up
    9340 
    9341 4987 atoms, 5239 bonds, 487 residues, 1 model selected 
    9342 
    9343 > select ~sel
    9344 
    9345 1018378 atoms, 1104452 bonds, 4 pseudobonds, 75272 residues, 28 models
    9346 selected 
    9347 
    9348 > ~select #2
    9349 
    9350 873488 atoms, 947629 bonds, 4 pseudobonds, 64298 residues, 354 models selected 
    9351 
    9352 > ~select #5
    9353 
    9354 727017 atoms, 789038 bonds, 4 pseudobonds, 53250 residues, 281 models selected 
    9355 
    9356 > ~select #11
    9357 
    9358 716694 atoms, 777589 bonds, 4 pseudobonds, 52689 residues, 224 models selected 
    9359 
    9360 > ~select #13
    9361 
    9362 716579 atoms, 777475 bonds, 4 pseudobonds, 52666 residues, 220 models selected 
    9363 
    9364 > ~select #14
    9365 
    9366 574411 atoms, 622966 bonds, 2 pseudobonds, 42430 residues, 217 models selected 
    9367 
    9368 > ~select #15
    9369 
    9370 429490 atoms, 466117 bonds, 2 pseudobonds, 31455 residues, 164 models selected 
    9371 
    9372 > ~select #16
    9373 
    9374 284581 atoms, 309279 bonds, 2 pseudobonds, 20483 residues, 109 models selected 
    9375 
    9376 > ~select #17
    9377 
    9378 142168 atoms, 154509 bonds, 2 pseudobonds, 10236 residues, 54 models selected 
    9379 
    9380 > delete atoms (#!1 & sel)
    9381 
    9382 > delete bonds (#!1 & sel)
    9383 
    9384 > hide #!1 models
    9385 
    9386 > open C:\Users\claud\Downloads\5mdv-pdb-bundle.tar\5mdv-pdb-bundle\5mdv.pdb
    9387 > format pdb
    9388 
    9389 Summary of feedback from opening C:\Users\claud\Downloads\5mdv-pdb-
    9390 bundle.tar\5mdv-pdb-bundle\5mdv.pdb 
    9391 --- 
    9392 warning | Ignored bad PDB record found on line 151407 
    9393 END 
    9394  
    9395 Chain information for 5mdv.pdb #3 
    9396 --- 
    9397 Chain | Description 
    9398 1 | No description available 
    9399 2 | No description available 
    9400 3 | No description available 
    9401 4 | No description available 
    9402 5 | No description available 
    9403 6 | No description available 
    9404 7 | No description available 
    9405 B | No description available 
    9406 C | No description available 
    9407 D | No description available 
    9408 E | No description available 
    9409 F | No description available 
    9410 G | No description available 
    9411 H | No description available 
    9412 I | No description available 
    9413 J | No description available 
    9414 K | No description available 
    9415 L | No description available 
    9416 M | No description available 
    9417 N | No description available 
    9418 O | No description available 
    9419 P | No description available 
    9420 Q | No description available 
    9421 R | No description available 
    9422 S | No description available 
    9423 T | No description available 
    9424 U | No description available 
    9425 V | No description available 
    9426 W | No description available 
    9427 X | No description available 
    9428 Y | No description available 
    9429 Z | No description available 
    9430 a | No description available 
    9431 b | No description available 
    9432 c | No description available 
    9433 d | No description available 
    9434 e | No description available 
    9435 f | No description available 
    9436 g | No description available 
    9437 h | No description available 
    9438 i | No description available 
    9439 j | No description available 
    9440 k | No description available 
    9441 l | No description available 
    9442 m | No description available 
    9443 n | No description available 
    9444 o | No description available 
    9445 p | No description available 
    9446 q | No description available 
    9447 r | No description available 
    9448 s | No description available 
    9449 t | No description available 
    9450 u | No description available 
    9451 v | No description available 
    9452 w | No description available 
    9453 x | No description available 
    9454 y | No description available 
    9455 z | No description available 
    9456  
    9457 
    9458 > ui tool show Matchmaker
    9459 
    9460 > show #!2 models
    9461 
    9462 > matchmaker #3/1 to #2/1 pairing ss matrix Nucleic
    9463 
    9464 Parameters 
    9465 --- 
    9466 Chain pairing | ss 
    9467 Alignment algorithm | Needleman-Wunsch 
    9468 Similarity matrix | Nucleic 
    9469 SS fraction | 0.3 
    9470 Gap open (HH/SS/other) | 18/18/6 
    9471 Gap extend | 1 
    9472 SS matrix |  |  | H | S | O 
    9473 ---|---|---|--- 
    9474 H | 6 | -9 | -6 
    9475 S |  | 6 | -6 
    9476 O |  |  | 4 
    9477 Iteration cutoff | 2 
    9478  
    9479 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 5mdv.pdb, chain 1 (#3), sequence
    9480 alignment score = 11581.2 
    9481 RMSD between 2237 pruned atom pairs is 1.314 angstroms; (across all 2903
    9482 pairs: 1.819) 
    9483  
    9484 
    9485 > show #3#!2 cartoons
    9486 
    9487 > hide #3#!2 surfaces
    9488 
    9489 > hide #3#!2 atoms
    9490 
    9491 > hide #!2 models
    9492 
    9493 > open C:\Users\claud\Downloads\5mdw-pdb-bundle.tar\5mdw-pdb-bundle\5mdw.pdb
    9494 > format pdb
    9495 
    9496 Summary of feedback from opening C:\Users\claud\Downloads\5mdw-pdb-
    9497 bundle.tar\5mdw-pdb-bundle\5mdw.pdb 
    9498 --- 
    9499 warning | Ignored bad PDB record found on line 151107 
    9500 END 
    9501  
    9502 Chain information for 5mdw.pdb #4 
    9503 --- 
    9504 Chain | Description 
    9505 1 | No description available 
    9506 2 | No description available 
    9507 3 | No description available 
    9508 4 | No description available 
    9509 5 | No description available 
    9510 6 | No description available 
    9511 7 | No description available 
    9512 B | No description available 
    9513 C | No description available 
    9514 D | No description available 
    9515 E | No description available 
    9516 F | No description available 
    9517 G | No description available 
    9518 H | No description available 
    9519 I | No description available 
    9520 J | No description available 
    9521 K | No description available 
    9522 L | No description available 
    9523 M | No description available 
    9524 N | No description available 
    9525 O | No description available 
    9526 P | No description available 
    9527 Q | No description available 
    9528 R | No description available 
    9529 S | No description available 
    9530 T | No description available 
    9531 U | No description available 
    9532 V | No description available 
    9533 W | No description available 
    9534 X | No description available 
    9535 Y | No description available 
    9536 Z | No description available 
    9537 a | No description available 
    9538 b | No description available 
    9539 c | No description available 
    9540 d | No description available 
    9541 e | No description available 
    9542 f | No description available 
    9543 g | No description available 
    9544 h | No description available 
    9545 i | No description available 
    9546 j | No description available 
    9547 k | No description available 
    9548 l | No description available 
    9549 m | No description available 
    9550 n | No description available 
    9551 o | No description available 
    9552 p | No description available 
    9553 q | No description available 
    9554 r | No description available 
    9555 s | No description available 
    9556 t | No description available 
    9557 u | No description available 
    9558 v | No description available 
    9559 w | No description available 
    9560 x | No description available 
    9561 y | No description available 
    9562 z | No description available 
    9563  
    9564 
    9565 > show #3#!4 cartoons
    9566 
    9567 > hide #3#!4 atoms
    9568 
    9569 > ui tool show Matchmaker
    9570 
    9571 > matchmaker #4/1 to #2/1 pairing ss matrix Nucleic
    9572 
    9573 Parameters 
    9574 --- 
    9575 Chain pairing | ss 
    9576 Alignment algorithm | Needleman-Wunsch 
    9577 Similarity matrix | Nucleic 
    9578 SS fraction | 0.3 
    9579 Gap open (HH/SS/other) | 18/18/6 
    9580 Gap extend | 1 
    9581 SS matrix |  |  | H | S | O 
    9582 ---|---|---|--- 
    9583 H | 6 | -9 | -6 
    9584 S |  | 6 | -6 
    9585 O |  |  | 4 
    9586 Iteration cutoff | 2 
    9587  
    9588 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 5mdw.pdb, chain 1 (#4), sequence
    9589 alignment score = 11581.2 
    9590 RMSD between 2323 pruned atom pairs is 1.304 angstroms; (across all 2903
    9591 pairs: 1.686) 
    9592  
    9593 
    9594 > hide #3 models
    9595 
    9596 > hide #!4 models
    9597 
    9598 > show #!2 models
    9599 
    9600 > open C:\Users\claud\Downloads\6szs-pdb-bundle.tar\6szs-pdb-bundle\6szs.pdb
    9601 > format pdb
    9602 
    9603 Summary of feedback from opening C:\Users\claud\Downloads\6szs-pdb-
    9604 bundle.tar\6szs-pdb-bundle\6szs.pdb 
    9605 --- 
    9606 warning | Ignored bad PDB record found on line 147968 
    9607 END 
    9608  
    9609 Chain information for 6szs.pdb #6 
    9610 --- 
    9611 Chain | Description 
    9612 0 | No description available 
    9613 1 | No description available 
    9614 2 | No description available 
    9615 3 | No description available 
    9616 4 | No description available 
    9617 5 | No description available 
    9618 A | No description available 
    9619 B | No description available 
    9620 C | No description available 
    9621 D | No description available 
    9622 E | No description available 
    9623 F | No description available 
    9624 G | No description available 
    9625 H | No description available 
    9626 J | No description available 
    9627 K | No description available 
    9628 L | No description available 
    9629 M | No description available 
    9630 N | No description available 
    9631 O | No description available 
    9632 P | No description available 
    9633 Q | No description available 
    9634 R | No description available 
    9635 S | No description available 
    9636 T | No description available 
    9637 U | No description available 
    9638 V | No description available 
    9639 W | No description available 
    9640 X | No description available 
    9641 Y | No description available 
    9642 Z | No description available 
    9643 a | No description available 
    9644 b | No description available 
    9645 c | No description available 
    9646 d | No description available 
    9647 e | No description available 
    9648 f | No description available 
    9649 g | No description available 
    9650 h | No description available 
    9651 i | No description available 
    9652 j | No description available 
    9653 k | No description available 
    9654 l | No description available 
    9655 m | No description available 
    9656 n | No description available 
    9657 o | No description available 
    9658 p | No description available 
    9659 q | No description available 
    9660 r | No description available 
    9661 s | No description available 
    9662 t | No description available 
    9663 u | No description available 
    9664 v | No description available 
    9665 x | No description available 
    9666 y | No description available 
    9667 z | No description available 
    9668  
    9669 
    9670 > show #6#!2 cartoons
    9671 
    9672 > hide #6#!2 atoms
    9673 
    9674 > ui tool show Matchmaker
    9675 
    9676 > matchmaker #6/A to #2/1 pairing ss matrix Nucleic
    9677 
    9678 Parameters 
    9679 --- 
    9680 Chain pairing | ss 
    9681 Alignment algorithm | Needleman-Wunsch 
    9682 Similarity matrix | Nucleic 
    9683 SS fraction | 0.3 
    9684 Gap open (HH/SS/other) | 18/18/6 
    9685 Gap extend | 1 
    9686 SS matrix |  |  | H | S | O 
    9687 ---|---|---|--- 
    9688 H | 6 | -9 | -6 
    9689 S |  | 6 | -6 
    9690 O |  |  | 4 
    9691 Iteration cutoff | 2 
    9692  
    9693 Matchmaker 6q97_A-site.pdb, chain 1 (#2) with 6szs.pdb, chain A (#6), sequence
    9694 alignment score = 11514.7 
    9695 RMSD between 2325 pruned atom pairs is 1.300 angstroms; (across all 2903
    9696 pairs: 1.806) 
    9697  
    9698 
    9699 > hide #!2 models
    9700 
    9701 > show #!4 models
    9702 
    9703 > show #3 models
    9704 
    9705 > show #!1 models
    9706 
    9707 > hide #!1 models
    9708 
    9709 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    9710 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    9711 
    9712 > select #6/y:23
    9713 
    9714 8 atoms, 7 bonds, 1 residue, 1 model selected 
    9715 
    9716 > select add #3/7:310
    9717 
    9718 16 atoms, 14 bonds, 2 residues, 2 models selected 
    9719 
    9720 > select add #6/z:308
    9721 
    9722 25 atoms, 22 bonds, 3 residues, 2 models selected 
    9723 
    9724 > select add #4/7:299
    9725 
    9726 34 atoms, 30 bonds, 4 residues, 3 models selected 
    9727 
    9728 > select add #4/6:19
    9729 
    9730 42 atoms, 37 bonds, 5 residues, 3 models selected 
    9731 
    9732 > select add #3/6:18
    9733 
    9734 47 atoms, 41 bonds, 6 residues, 3 models selected 
    9735 Drag select of 9 residues 
    9736 
    9737 > select add #6/v:13
    9738 
    9739 266 atoms, 62 bonds, 16 residues, 3 models selected 
    9740 
    9741 > select add #3/4:14
    9742 
    9743 288 atoms, 86 bonds, 17 residues, 3 models selected 
    9744 
    9745 > select add #4/4:14
    9746 
    9747 310 atoms, 110 bonds, 18 residues, 3 models selected 
    9748 
    9749 > select up
    9750 
    9751 6213 atoms, 6825 bonds, 363 residues, 3 models selected 
    9752 
    9753 > select up
    9754 
    9755 14643 atoms, 15380 bonds, 1450 residues, 3 models selected 
    9756 
    9757 > select ~sel
    9758 
    9759 1313414 atoms, 1423621 bonds, 2 pseudobonds, 97709 residues, 30 models
    9760 selected 
    9761 
    9762 > ~select #1
    9763 
    9764 1308427 atoms, 1418382 bonds, 2 pseudobonds, 97222 residues, 356 models
    9765 selected 
    9766 
    9767 > ~select #2
    9768 
    9769 1163537 atoms, 1261559 bonds, 2 pseudobonds, 86248 residues, 355 models
    9770 selected 
    9771 
    9772 > ~select #5
    9773 
    9774 1017066 atoms, 1102968 bonds, 2 pseudobonds, 75200 residues, 282 models
    9775 selected 
    9776 
    9777 > ~select #11
    9778 
    9779 1006743 atoms, 1091519 bonds, 2 pseudobonds, 74639 residues, 225 models
    9780 selected 
    9781 
    9782 > ~select #13
    9783 
    9784 1006628 atoms, 1091405 bonds, 2 pseudobonds, 74616 residues, 221 models
    9785 selected 
    9786 
    9787 > ~select #14
    9788 
    9789 864460 atoms, 936896 bonds, 64380 residues, 218 models selected 
    9790 
    9791 > ~select #15
    9792 
    9793 719539 atoms, 780047 bonds, 53405 residues, 165 models selected 
    9794 
    9795 > ~select #16
    9796 
    9797 574630 atoms, 623209 bonds, 42433 residues, 110 models selected 
    9798 
    9799 > ~select #17
    9800 
    9801 432217 atoms, 468439 bonds, 32186 residues, 55 models selected 
    9802 
    9803 > delete atoms sel
    9804 
    9805 > delete bonds sel
    9806 
    9807 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    9808 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    9809 
    9810 > show #!1 models
    9811 
    9812 > hide #6 models
    9813 
    9814 > show #6 models
    9815 
    9816 > show #3,6#!1,4 surfaces
    9817 
    9818 > hide #!1,3-4,6 cartoons
    9819 
    9820 > hide #!6 models
    9821 
    9822 Drag select of huter_corrected.pdb_x SES surface, 51574 of 220318 triangles,
    9823 5mdv.pdb_5 SES surface, 51584 of 218068 triangles, 5mdw.pdb_5 SES surface,
    9824 51768 of 218916 triangles 
    9825 Drag select of huter_corrected.pdb_x SES surface, 34495 of 220318 triangles,
    9826 5mdv.pdb_5 SES surface, 32078 of 218068 triangles, 5mdw.pdb_5 SES surface,
    9827 32427 of 218916 triangles 
    9828 
    9829 > color sel forest green
    9830 
    9831 > select clear
    9832 
    9833 Drag select of huter_corrected.pdb_z SES surface, 42514 of 388472 triangles,
    9834 5mdv.pdb_7 SES surface, 36964 of 356716 triangles, 5mdw.pdb_7 SES surface,
    9835 63541 of 325306 triangles 
    9836 
    9837 > color sel orange red
    9838 
    9839 > color sel coral
    9840 
    9841 > color sel orange
    9842 
    9843 > color sel orange
    9844 
    9845 > color sel dark orange
    9846 
    9847 > color sel coral
    9848 
    9849 > color sel dark orange
    9850 
    9851 > color sel peach puff
    9852 
    9853 > color sel navajo white
    9854 
    9855 > color sel orange
    9856 
    9857 > color sel dark orange
    9858 
    9859 Drag select of huter_corrected.pdb_v SES surface, 7715 of 23030 triangles,
    9860 5mdv.pdb_4 SES surface, 3376 of 19394 triangles, 5mdw.pdb_4 SES surface, 3442
    9861 of 19382 triangles 
    9862 
    9863 > color sel deep sky blue
    9864 
    9865 Drag select of huter_corrected.pdb_w SES surface, 7191 of 70914 triangles,
    9866 5mdv.pdb_6 SES surface, 6635 of 70600 triangles, 5mdw.pdb_6 SES surface, 7179
    9867 of 52276 triangles 
    9868 
    9869 > color sel crimson
    9870 
    9871 > color sel red
    9872 
    9873 > color sel crimson
    9874 
    9875 > color sel red
    9876 
    9877 > color sel fire brick
    9878 
    9879 > color sel indian red
    9880 
    9881 > color sel pale violet red
    9882 
    9883 > color sel crimson
    9884 
    9885 > color sel red
    9886 
    9887 > color sel crimson
    9888 
    9889 Drag select of huter_corrected.pdb_v SES surface, 7611 of 23030 triangles,
    9890 5mdv.pdb_4 SES surface, 3747 of 19394 triangles, 5mdw.pdb_4 SES surface, 3887
    9891 of 19382 triangles 
    9892 
    9893 > color sel cyan
    9894 
    9895 > color sel deep sky blue
    9896 
    9897 > select clear
    9898 
    9899 Drag select of huter_corrected.pdb_v SES surface, 7725 of 23030 triangles,
    9900 5mdv.pdb_4 SES surface, 3886 of 19394 triangles, 5mdw.pdb_4 SES surface, 3931
    9901 of 19382 triangles 
    9902 
    9903 > color sel cyan
    9904 
    9905 > select clear
    9906 
    9907 > hide #!3 models
    9908 
    9909 > hide #!1 models
    9910 
    9911 > show #!4 cartoons
    9912 
    9913 > hide #!4 surfaces
    9914 
    9915 > show #!4 surfaces
    9916 
    9917 > hide #!4 cartoons
    9918 
    9919 > hide #!4 models
    9920 
    9921 > show #!6 models
    9922 
    9923 Drag select of 6szs.pdb_v SES surface, 1737 of 22602 triangles 
    9924 Drag select of 6szs.pdb_v SES surface, 2465 of 22602 triangles 
    9925 
    9926 > color sel cyan
    9927 
    9928 Drag select of 6szs.pdb_x SES surface, 61055 of 216632 triangles 
    9929 
    9930 > color sel forest green
    9931 
    9932 Drag select of 6szs.pdb_z SES surface, 37693 of 344668 triangles 
    9933 
    9934 > color sel teal
    9935 
    9936 > color sel deep sky blue
    9937 
    9938 > color sel coral
    9939 
    9940 > color sel peru
    9941 
    9942 > color sel tomato
    9943 
    9944 > color sel dark orange
    9945 
    9946 > color sel tomato
    9947 
    9948 > color sel plum
    9949 
    9950 > color sel rosy brown
    9951 
    9952 > color sel aquamarine
    9953 
    9954 > color sel light sky blue
    9955 
    9956 > color sel sky blue
    9957 
    9958 > color sel pale turquoise
    9959 
    9960 > color sel silver
    9961 
    9962 > color sel dark orchid
    9963 
    9964 > color sel dark magenta
    9965 
    9966 > color sel rebecca purple
    9967 
    9968 > color sel dark olive green
    9969 
    9970 > color sel yellow
    9971 
    9972 > color sel coral
    9973 
    9974 > show #!3 models
    9975 
    9976 > hide #!3 models
    9977 
    9978 > color sel salmon
    9979 
    9980 > show #!3 models
    9981 
    9982 > hide #!3 models
    9983 
    9984 > color sel chocolate
    9985 
    9986 > show #!3 models
    9987 
    9988 > hide #!3 models
    9989 
    9990 > color sel saddle brown
    9991 
    9992 > color sel brown
    9993 
    9994 > color sel fire brick
    9995 
    9996 > color sel indian red
    9997 
    9998 > show #!3 models
    9999 
    10000 > hide #!3 models
    10001 
    10002 > color sel fire brick
    10003 
    10004 > color sel maroon
    10005 
    10006 > color sel dark red
    10007 
    10008 > color sel brown
    10009 
    10010 > color sel dark red
    10011 
    10012 > color sel fire brick
    10013 
    10014 > color sel crimson
    10015 
    10016 > color sel dark cyan
    10017 
    10018 > color sel dark turquoise
    10019 
    10020 > color sel dodger blue
    10021 
    10022 > color sel turquoise
    10023 
    10024 > color sel slate blue
    10025 
    10026 > color sel light coral
    10027 
    10028 > color sel thistle
    10029 
    10030 > color sel pale violet red
    10031 
    10032 > color sel hot pink
    10033 
    10034 > color sel magenta
    10035 
    10036 > color sel deep pink
    10037 
    10038 > color sel cornflower blue
    10039 
    10040 > color sel yellow
    10041 
    10042 > color sel gold
    10043 
    10044 > show #!3 models
    10045 
    10046 > hide #!3 models
    10047 
    10048 Drag select of 6szs.pdb_y SES surface, 4355 of 83380 triangles 
    10049 
    10050 > color sel cornflower blue
    10051 
    10052 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10053 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10054 
    10055 > select clear
    10056 
    10057 Drag select of 6szs.pdb_z SES surface, 17718 of 344668 triangles 
    10058 
    10059 > color sel indian red
    10060 
    10061 > color sel dark red
    10062 
    10063 > color sel brown
    10064 
    10065 > show #!3 models
    10066 
    10067 > hide #!3 models
    10068 
    10069 > color sel saddle brown
    10070 
    10071 > color sel sienna
    10072 
    10073 > color sel chocolate
    10074 
    10075 > color sel saddle brown
    10076 
    10077 > color sel sienna
    10078 
    10079 > select clear
    10080 
    10081 > sharpBoundaries true
    10082 
    10083 Unknown command: sharpBoundaries true 
    10084 
    10085 > sharpBoundaries, true
    10086 
    10087 Unknown command: sharpBoundaries, true 
    10088 
    10089 > surface sharpBoundaries true
    10090 
    10091 > show #!4 models
    10092 
    10093 > hide #!6 models
    10094 
    10095 > surface sharpBoundaries true
    10096 
    10097 > show #!6 models
    10098 
    10099 > hide #!4 models
    10100 
    10101 > show #!6 cartoons
    10102 
    10103 > hide #!6 surfaces
    10104 
    10105 > show #!6 atoms
    10106 
    10107 > style #!6 stick
    10108 
    10109 Changed 4948 atom styles 
    10110 
    10111 > show #!3 models
    10112 
    10113 > hide #!6 models
    10114 
    10115 > hide #!3 surfaces
    10116 
    10117 > show #!3 atoms
    10118 
    10119 > style #!3 stick
    10120 
    10121 Changed 4985 atom styles 
    10122 
    10123 > show #!3 cartoons
    10124 
    10125 > show #!3 surfaces
    10126 
    10127 > hide #!3 surfaces
    10128 
    10129 > hide #!3 surfaces
    10130 
    10131 > show #!3 surfaces
    10132 
    10133 > hide #!3 cartoons
    10134 
    10135 > hide #!3 atoms
    10136 
    10137 > show #!6 models
    10138 
    10139 > show #!3,6 surfaces
    10140 
    10141 > hide #!3,6 atoms
    10142 
    10143 > hide #!3,6 cartoons
    10144 
    10145 > hide #!6 models
    10146 
    10147 > hide #!3 models
    10148 
    10149 > show #!4 models
    10150 
    10151 > view name 3
    10152 
    10153 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10154 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10155 
    10156 > view 2
    10157 
    10158 > view 3
    10159 
    10160 > hide #!4 models
    10161 
    10162 > show #!3 models
    10163 
    10164 > show #!4 models
    10165 
    10166 > hide #!3 models
    10167 
    10168 > hide #!4 models
    10169 
    10170 > show #!17 models
    10171 
    10172 > hide #!17 models
    10173 
    10174 > show #!1 models
    10175 
    10176 > show #!3 models
    10177 
    10178 > hide #!3 models
    10179 
    10180 > show #!3 models
    10181 
    10182 > hide #!1 models
    10183 
    10184 > show #!1 models
    10185 
    10186 > hide #!1 models
    10187 
    10188 > show #!1 models
    10189 
    10190 > hide #!1 models
    10191 
    10192 > show #!1 models
    10193 
    10194 > hide #!1 models
    10195 
    10196 > show #!1 models
    10197 
    10198 > hide #!1 models
    10199 
    10200 > show #!1 models
    10201 
    10202 > hide #!1 models
    10203 
    10204 > show #!1 models
    10205 
    10206 > hide #!3 models
    10207 
    10208 > show #!1 cartoons
    10209 
    10210 > hide #!1 surfaces
    10211 
    10212 > select clear
    10213 
    10214 > show #!4 models
    10215 
    10216 > hide #!1,4 surfaces
    10217 
    10218 > show #!1,4 cartoons
    10219 
    10220 Drag select of 99 residues 
    10221 
    10222 > select up
    10223 
    10224 1433 atoms, 1444 bonds, 180 residues, 4 models selected 
    10225 
    10226 > select up
    10227 
    10228 5552 atoms, 5627 bonds, 700 residues, 4 models selected 
    10229 
    10230 > color sel dark orange
    10231 
    10232 Drag select of 16 residues 
    10233 
    10234 > select up
    10235 
    10236 344 atoms, 346 bonds, 42 residues, 4 models selected 
    10237 
    10238 > select up
    10239 
    10240 630 atoms, 640 bonds, 77 residues, 4 models selected 
    10241 
    10242 > color sel crimson
    10243 
    10244 > color sel red
    10245 
    10246 > color sel crimson
    10247 
    10248 > select clear
    10249 
    10250 Drag select of 1 residues 
    10251 Drag select of 3 residues 
    10252 
    10253 > select up
    10254 
    10255 235 atoms, 261 bonds, 11 residues, 4 models selected 
    10256 
    10257 > color sel cyan
    10258 
    10259 > select clear
    10260 
    10261 Drag select of 13 residues 
    10262 Drag select of 21 residues 
    10263 
    10264 > select up
    10265 
    10266 3268 atoms, 3650 bonds, 153 residues, 4 models selected 
    10267 
    10268 > color sel forest green
    10269 
    10270 > select clear
    10271 
    10272 > hide #!4 models
    10273 
    10274 > hide #!1 models
    10275 
    10276 > show #!6 models
    10277 
    10278 > hide #!6 surfaces
    10279 
    10280 > show #!6 cartoons
    10281 
    10282 Drag select of 34 residues 
    10283 
    10284 > color sel sienna
    10285 
    10286 > select clear
    10287 
    10288 Drag select of 73 residues 
    10289 
    10290 > select up
    10291 
    10292 682 atoms, 687 bonds, 96 residues, 2 models selected 
    10293 
    10294 > select up
    10295 
    10296 2742 atoms, 2786 bonds, 362 residues, 2 models selected 
    10297 
    10298 > color sel sienna
    10299 
    10300 Drag select of 9 residues 
    10301 
    10302 > select up
    10303 
    10304 134 atoms, 136 bonds, 15 residues, 2 models selected 
    10305 
    10306 > select up
    10307 
    10308 434 atoms, 440 bonds, 54 residues, 2 models selected 
    10309 
    10310 > color sel cornflower blue
    10311 
    10312 Drag select of 21 residues 
    10313 
    10314 > select up
    10315 
    10316 1646 atoms, 1839 bonds, 77 residues, 2 models selected 
    10317 
    10318 > color sel forest green
    10319 
    10320 Drag select of 2 residues 
    10321 
    10322 > select up
    10323 
    10324 126 atoms, 139 bonds, 6 residues, 2 models selected 
    10325 
    10326 > color sel cyan
    10327 
    10328 > select clear
    10329 
    10330 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10331 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10332 
    10333 > show #!4 models
    10334 
    10335 > show #!1 models
    10336 
    10337 > cartoon style #1,4,6 modeHelix tube sides 20
    10338 
    10339 > hide #!6 models
    10340 
    10341 > hide #!1 models
    10342 
    10343 > cartoon style #4 xsection oval modeHelix default
    10344 
    10345 > cartoon style #4 modeHelix tube sides 20
    10346 
    10347 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10348 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10349 
    10350 ——— End of log from Wed Nov 11 01:27:39 2020 ———
    10351 
    10352 opened ChimeraX session 
    10353 
    10354 > setattr #4/6:27-30 res ss_type 2
    10355 
    10356 Assigning ss_type attribute to 4 items 
    10357 
    10358 > hide #!4 models
    10359 
    10360 > show #!3 models
    10361 
    10362 > hide #!3 models
    10363 
    10364 > show #!1 models
    10365 
    10366 > setattr #1/w:27-30 res ss_type 2
    10367 
    10368 Assigning ss_type attribute to 4 items 
    10369 
    10370 > hide #!1 models
    10371 
    10372 > show #!3 models
    10373 
    10374 > hide #!3 surfaces
    10375 
    10376 > show #!3 cartoons
    10377 
    10378 > setattr #3/6:27-30 res ss_type 2
    10379 
    10380 Assigning ss_type attribute to 4 items 
    10381 Drag select of 41 residues 
    10382 
    10383 > select up
    10384 
    10385 616 atoms, 621 bonds, 77 residues, 2 models selected 
    10386 
    10387 > select up
    10388 
    10389 2863 atoms, 2903 bonds, 362 residues, 2 models selected 
    10390 
    10391 > ui tool show "Color Actions"
    10392 
    10393 > color sel dark orange
    10394 
    10395 > select clear
    10396 
    10397 Drag select of 2 residues 
    10398 
    10399 > select clear
    10400 
    10401 Drag select of 3 residues 
    10402 
    10403 > select up
    10404 
    10405 125 atoms, 126 bonds, 16 residues, 2 models selected 
    10406 
    10407 > select up
    10408 
    10409 377 atoms, 383 bonds, 46 residues, 2 models selected 
    10410 
    10411 > color sel crimson
    10412 
    10413 > select clear
    10414 
    10415 Drag select of 20 residues 
    10416 
    10417 > select up
    10418 
    10419 1622 atoms, 1811 bonds, 76 residues, 2 models selected 
    10420 
    10421 > color sel forest green
    10422 
    10423 > select #3/4:14
    10424 
    10425 22 atoms, 24 bonds, 1 residue, 1 model selected 
    10426 
    10427 > select up
    10428 
    10429 109 atoms, 122 bonds, 5 residues, 2 models selected 
    10430 
    10431 > color sel cyan
    10432 
    10433 > select clear
    10434 
    10435 > hide #!3 models
    10436 
    10437 > show #!6 models
    10438 
    10439 > setattr #6/y:35-38 res ss_type 2
    10440 
    10441 Assigning ss_type attribute to 4 items 
    10442 
    10443 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10444 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10445 
    10446 > show #!4 models
    10447 
    10448 > hide #!4 models
    10449 
    10450 > show #!3 models
    10451 
    10452 > cartoon style #3,6 modeHelix tube sides 20
    10453 
    10454 > hide #!3 models
    10455 
    10456 > view 2
    10457 
    10458 > ui tool show "Side View"
    10459 
    10460 > view 1
    10461 
    10462 > show #!6 surfaces
    10463 
    10464 > hide #!6 cartoons
    10465 
    10466 > hide #!6 models
    10467 
    10468 > show #!3 models
    10469 
    10470 > show #!3 surfaces
    10471 
    10472 > hide #!3 models
    10473 
    10474 > show #!4 models
    10475 
    10476 > show #!4 surfaces
    10477 
    10478 > hide #!4 surfaces
    10479 
    10480 > show #!3 models
    10481 
    10482 > hide #!3-4 surfaces
    10483 
    10484 > show #!6 models
    10485 
    10486 > hide #!3-4,6 surfaces
    10487 
    10488 > show #!3-4,6 cartoons
    10489 
    10490 > hide #!3 models
    10491 
    10492 > hide #!4 models
    10493 
    10494 > hide #!6 models
    10495 
    10496 > show #!6 models
    10497 
    10498 > show #!4 models
    10499 
    10500 > show #!3 models
    10501 
    10502 > show #!3-4,6 surfaces
    10503 
    10504 > hide #!3 models
    10505 
    10506 > hide #!4 models
    10507 
    10508 > hide #!6 models
    10509 
    10510 > show #!15 models
    10511 
    10512 > view 1
    10513 
    10514 > view 1
    10515 
    10516 > view 2
    10517 
    10518 > save C:\Users\claud\Desktop\image1.png supersample 3
    10519 
    10520 > save C:\Users\claud\Desktop\image2.png supersample 3
    10521 
    10522 > show #!16 models
    10523 
    10524 > hide #!15 models
    10525 
    10526 > save C:\Users\claud\Desktop\image2.png supersample 3
    10527 
    10528 > hide #!16 models
    10529 
    10530 > show #!17 models
    10531 
    10532 > hide #!17 models
    10533 
    10534 > show #!17 models
    10535 
    10536 > save C:\Users\claud\Desktop\image3.png supersample 3
    10537 
    10538 > hide #!17 models
    10539 
    10540 > show #!3 models
    10541 
    10542 > save C:\Users\claud\Desktop\image4.png supersample 3
    10543 
    10544 > hide #!3 models
    10545 
    10546 > show #!4 models
    10547 
    10548 > save C:\Users\claud\Desktop\image5.png supersample 3
    10549 
    10550 > hide #!4 models
    10551 
    10552 > show #!6 models
    10553 
    10554 > save C:\Users\claud\Desktop\image6.png supersample 3
    10555 
    10556 > view 1
    10557 
    10558 > hide #!6 models
    10559 
    10560 > show #!3 models
    10561 
    10562 > save C:\Users\claud\Desktop\image4.png supersample 3
    10563 
    10564 > show #!4 models
    10565 
    10566 > hide #!3 models
    10567 
    10568 > save C:\Users\claud\Desktop\image5.png supersample 3
    10569 
    10570 > hide #!4 models
    10571 
    10572 > show #!6 models
    10573 
    10574 > save C:\Users\claud\Desktop\image6.png supersample 3
    10575 
    10576 > hide #!6 models
    10577 
    10578 > show #!4 models
    10579 
    10580 Drag select of 5mdw.pdb_6 SES surface, 16161 of 52276 triangles, 5mdw.pdb_7
    10581 SES surface, 6173 of 325306 triangles, 16 residues 
    10582 
    10583 > select up
    10584 
    10585 306 atoms, 308 bonds, 38 residues, 3 models selected 
    10586 
    10587 > select up
    10588 
    10589 2967 atoms, 3006 bonds, 373 residues, 3 models selected 
    10590 
    10591 > hide sel surfaces
    10592 
    10593 > hide sel cartoons
    10594 
    10595 > select clear
    10596 
    10597 > save C:\Users\claud\Desktop\image7.png supersample 3
    10598 
    10599 > show #!4 cartoons
    10600 
    10601 > hide #!4 surfaces
    10602 
    10603 > select clear
    10604 
    10605 > show #!3 models
    10606 
    10607 > hide #!3-4 surfaces
    10608 
    10609 > hide #!3 models
    10610 
    10611 Drag select of 10 residues 
    10612 
    10613 > select up
    10614 
    10615 125 atoms, 126 bonds, 16 residues, 2 models selected 
    10616 
    10617 > select up
    10618 
    10619 261 atoms, 265 bonds, 32 residues, 2 models selected 
    10620 
    10621 > hide sel cartoons
    10622 
    10623 > view name 4
    10624 
    10625 > select #4/7:97
    10626 
    10627 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10628 
    10629 > select up
    10630 
    10631 209 atoms, 210 bonds, 26 residues, 2 models selected 
    10632 
    10633 > select up
    10634 
    10635 2706 atoms, 2741 bonds, 341 residues, 2 models selected 
    10636 
    10637 > color (#!4 & sel) light gray
    10638 
    10639 > color (#!4 & sel) dim gray
    10640 
    10641 > ui tool show "Color Actions"
    10642 
    10643 > color sel gray
    10644 
    10645 > color sel silver
    10646 
    10647 > color sel gray
    10648 
    10649 > select clear
    10650 
    10651 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10652 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10653 
    10654 > transparency #4/7 50 cartoons
    10655 
    10656 > transparency #4/7 40 cartoons
    10657 
    10658 > transparency #4/7 60 cartoons
    10659 
    10660 > show #!3 models
    10661 
    10662 > transparency #4/7 70 cartoons
    10663 
    10664 > view 4
    10665 
    10666 > save C:\Users\claud\Desktop\image8.png supersample 3
    10667 
    10668 Drag select of 5 residues 
    10669 
    10670 > select up
    10671 
    10672 125 atoms, 126 bonds, 16 residues, 2 models selected 
    10673 
    10674 > select up
    10675 
    10676 377 atoms, 383 bonds, 46 residues, 2 models selected 
    10677 
    10678 > hide sel cartoons
    10679 
    10680 > view 4
    10681 
    10682 > save C:\Users\claud\Desktop\image8.png supersample 3
    10683 
    10684 > view name 5
    10685 
    10686 > save C:\Users\claud\Desktop\image9.png supersample 3
    10687 
    10688 > hide #!4 models
    10689 
    10690 > show #!4 models
    10691 
    10692 > hide #!4 models
    10693 
    10694 > show #!4 models
    10695 
    10696 > hide #!4 models
    10697 
    10698 > show #!4 models
    10699 
    10700 > hide #!3 models
    10701 
    10702 Drag select of 21 residues 
    10703 
    10704 > select up
    10705 
    10706 1731 atoms, 1933 bonds, 81 residues, 3 models selected 
    10707 
    10708 > hide sel cartoons
    10709 
    10710 > show sel cartoons
    10711 
    10712 > hide sel cartoons
    10713 
    10714 > show sel cartoons
    10715 
    10716 > hide sel cartoons
    10717 
    10718 > show #!3 models
    10719 
    10720 > save C:\Users\claud\Desktop\image9.png supersample 3
    10721 
    10722 > hide #!4 models
    10723 
    10724 > show #!3 cartoons
    10725 
    10726 > show #!4 models
    10727 
    10728 > hide #!3 models
    10729 
    10730 > show sel cartoons
    10731 
    10732 > show sel cartoons
    10733 
    10734 > select clear
    10735 
    10736 > show #!4 cartoons
    10737 
    10738 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10739 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10740 
    10741 > show #!3 models
    10742 
    10743 > show #!6 models
    10744 
    10745 > hide #!3-4,6 surfaces
    10746 
    10747 > hide #!6 models
    10748 
    10749 > hide #!4 models
    10750 
    10751 > hide #!3 models
    10752 
    10753 > show #!4 models
    10754 
    10755 > select clear
    10756 
    10757 > transparency #4/7 0 cartoons
    10758 
    10759 Drag select of 25 residues 
    10760 
    10761 > select up
    10762 
    10763 498 atoms, 502 bonds, 63 residues, 2 models selected 
    10764 
    10765 > select up
    10766 
    10767 2706 atoms, 2741 bonds, 341 residues, 2 models selected 
    10768 
    10769 > ui tool show "Color Actions"
    10770 
    10771 > color sel dark orange
    10772 
    10773 > select clear
    10774 
    10775 > view name 6
    10776 
    10777 > save C:\Users\claud\Desktop\image10.png supersample 3
    10778 
    10779 > hide #!4 models
    10780 
    10781 > show #!3 models
    10782 
    10783 > save C:\Users\claud\Desktop\image11.png supersample 3
    10784 
    10785 > hide #!3 models
    10786 
    10787 > show #!6 models
    10788 
    10789 > save C:\Users\claud\Desktop\image12.png supersample 3
    10790 
    10791 > view 6
    10792 
    10793 > hide #!6 models
    10794 
    10795 > show #!3 models
    10796 
    10797 > show #!1 models
    10798 
    10799 > hide #!1 models
    10800 
    10801 > show #!1 models
    10802 
    10803 > hide #!3 models
    10804 
    10805 > show #!3 models
    10806 
    10807 > hide #!1 models
    10808 
    10809 > hide #!3 models
    10810 
    10811 > show #!1 models
    10812 
    10813 > hide #!1 models
    10814 
    10815 > show #!3 models
    10816 
    10817 > hide #!3 models
    10818 
    10819 > show #!1 models
    10820 
    10821 > show #!3 models
    10822 
    10823 > hide #!3 models
    10824 
    10825 > show #!3 models
    10826 
    10827 > hide #!1 models
    10828 
    10829 > view 6
    10830 
    10831 > hide #!3 models
    10832 
    10833 > show #!6 models
    10834 
    10835 > hide #!6 models
    10836 
    10837 > show #!6 models
    10838 
    10839 > view name 7
    10840 
    10841 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10842 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10843 
    10844 > view 6
    10845 
    10846 > view 5
    10847 
    10848 > view 4
    10849 
    10850 > view 7
    10851 
    10852 > view 6
    10853 
    10854 > hide #!6 models
    10855 
    10856 > show #!17 models
    10857 
    10858 > show #!6 models
    10859 
    10860 > hide #!6 models
    10861 
    10862 > view name 8
    10863 
    10864 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10865 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10866 
    10867 > show #!6 models
    10868 
    10869 > hide #!6 models
    10870 
    10871 > hide #!17 models
    10872 
    10873 > show #!16 models
    10874 
    10875 > show #!15 models
    10876 
    10877 > show #!14 models
    10878 
    10879 > hide #!15 models
    10880 
    10881 > hide #!16 models
    10882 
    10883 > hide #!14 models
    10884 
    10885 > show #!16 models
    10886 
    10887 > view
    10888 
    10889 > show #!15 models
    10890 
    10891 > hide #!16 models
    10892 
    10893 > show #!16 models
    10894 
    10895 > hide #!15 models
    10896 
    10897 > select #16/p:105@CZ
    10898 
    10899 1 atom, 1 residue, 1 model selected 
    10900 
    10901 > select up
    10902 
    10903 11 atoms, 11 bonds, 1 residue, 2 models selected 
    10904 
    10905 > select up
    10906 
    10907 49 atoms, 49 bonds, 6 residues, 2 models selected 
    10908 
    10909 > select up
    10910 
    10911 877 atoms, 893 bonds, 117 residues, 2 models selected 
    10912 
    10913 > color sel lemon chiffon
    10914 
    10915 > select clear
    10916 
    10917 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10918 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10919 
    10920 > view 8
    10921 
    10922 > hide #!16 models
    10923 
    10924 > show #!3 models
    10925 
    10926 > view 7
    10927 
    10928 > view 8
    10929 
    10930 > view name 9
    10931 
    10932 > save C:\Users\claud\Desktop\image13.png supersample 3
    10933 
    10934 > view 6
    10935 
    10936 > hide #!3 models
    10937 
    10938 > show #!4 models
    10939 
    10940 > save C:\Users\claud\Desktop\image14.png supersample 3
    10941 
    10942 > hide #!4 models
    10943 
    10944 > show #!6 models
    10945 
    10946 > hide #!6 models
    10947 
    10948 > view 8
    10949 
    10950 > show #!15 models
    10951 
    10952 > save C:\Users\claud\Desktop\image13.png supersample 3
    10953 
    10954 > hide #!15 models
    10955 
    10956 > show #!16 models
    10957 
    10958 > save C:\Users\claud\Desktop\image14.png supersample 3
    10959 
    10960 > hide #!16 models
    10961 
    10962 > show #!17 models
    10963 
    10964 > hide #!17 models
    10965 
    10966 > show #!17 models
    10967 
    10968 > save C:\Users\claud\Desktop\image15.png supersample 3
    10969 
    10970 > show #!6 models
    10971 
    10972 > hide #!6 models
    10973 
    10974 > hide #!17 models
    10975 
    10976 > view 6
    10977 
    10978 > show #!6 models
    10979 
    10980 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    10981 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    10982 
    10983 > select #17
    10984 
    10985 142413 atoms, 154770 bonds, 10247 residues, 51 models selected 
    10986 
    10987 > ~select #17
    10988 
    10989 52 models selected 
    10990 
    10991 > select #6
    10992 
    10993 4948 atoms, 5204 bonds, 499 residues, 1 model selected 
    10994 
    10995 > ui tool show "Build Structure"
    10996 
    10997 > toolshed show
    10998 
    10999 > select clear
    11000 
    11001 > setattr #6/z:26-40 res ss_type 1
    11002 
    11003 Assigning ss_type attribute to 15 items 
    11004 
    11005 > setattr #6/z:26-40 res ss_type 0
    11006 
    11007 Assigning ss_type attribute to 15 items 
    11008 
    11009 > setattr #6/z:26-40 res ss_type 1
    11010 
    11011 Assigning ss_type attribute to 15 items 
    11012 
    11013 > setattr #6/z:44-47 res ss_type 1
    11014 
    11015 Assigning ss_type attribute to 4 items 
    11016 
    11017 > setattr #6/z:321-326 res ss_type 0
    11018 
    11019 Assigning ss_type attribute to 6 items 
    11020 
    11021 > setattr #6/z:321-325 res ss_type 2
    11022 
    11023 Assigning ss_type attribute to 5 items 
    11024 
    11025 > setattr #6/z:321-325 res ss_type 0
    11026 
    11027 Assigning ss_type attribute to 5 items 
    11028 
    11029 > setattr #6/z:321-324 res ss_type 2
    11030 
    11031 Assigning ss_type attribute to 4 items 
    11032 
    11033 > setattr #6/z:321-325 res ss_type 0
    11034 
    11035 Assigning ss_type attribute to 5 items 
    11036 
    11037 > setattr #6/z:323-326 res ss_type 2
    11038 
    11039 Assigning ss_type attribute to 4 items 
    11040 
    11041 > setattr #6/z:332-3335 res ss_type 2
    11042 
    11043 Assigning ss_type attribute to 35 items 
    11044 
    11045 > setattr #6/z:332-3335 res ss_type 0
    11046 
    11047 Assigning ss_type attribute to 35 items 
    11048 
    11049 > setattr #6/z:332-335 res ss_type 2
    11050 
    11051 Assigning ss_type attribute to 4 items 
    11052 
    11053 > setattr #6/z:332-336 res ss_type 2
    11054 
    11055 Assigning ss_type attribute to 5 items 
    11056 
    11057 > setattr #6/z:332-336 res ss_type 0
    11058 
    11059 Assigning ss_type attribute to 5 items 
    11060 
    11061 > setattr #6/z:332-335 res ss_type 2
    11062 
    11063 Assigning ss_type attribute to 4 items 
    11064 
    11065 > setattr #6/z:340-343 res ss_type 2
    11066 
    11067 Assigning ss_type attribute to 4 items 
    11068 
    11069 > setattr #6/z:332-336 res ss_type 2
    11070 
    11071 Assigning ss_type attribute to 5 items 
    11072 
    11073 > setattr #6/z:332-336 res ss_type 0
    11074 
    11075 Assigning ss_type attribute to 5 items 
    11076 
    11077 > setattr #6/z:332-335 res ss_type 2
    11078 
    11079 Assigning ss_type attribute to 4 items 
    11080 
    11081 > setattr #6/z:340-343 res ss_type 0
    11082 
    11083 Assigning ss_type attribute to 4 items 
    11084 
    11085 > setattr #6/z:341-343 res ss_type 2
    11086 
    11087 Assigning ss_type attribute to 3 items 
    11088 
    11089 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    11090 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    11091 
    11092 > setattr #6/z:346-350 res ss_type 1
    11093 
    11094 Assigning ss_type attribute to 5 items 
    11095 
    11096 > setattr #6/z:354-365 res ss_type 1
    11097 
    11098 Assigning ss_type attribute to 12 items 
    11099 
    11100 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    11101 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    11102 
    11103 > show #!3 models
    11104 
    11105 Drag select of 27 residues 
    11106 
    11107 > select up
    11108 
    11109 3503 atoms, 3911 bonds, 164 residues, 6 models selected 
    11110 
    11111 > hide sel cartoons
    11112 
    11113 > select clear
    11114 
    11115 > setattr #6/z:175-179 res ss_type 0
    11116 
    11117 Assigning ss_type attribute to 5 items 
    11118 
    11119 > setattr #6/z:177-183 res ss_type 2
    11120 
    11121 Assigning ss_type attribute to 7 items 
    11122 
    11123 > setattr #6/z:166-169 res ss_type 0
    11124 
    11125 Assigning ss_type attribute to 4 items 
    11126 
    11127 > setattr #6/z:161-168 res ss_type 2
    11128 
    11129 Assigning ss_type attribute to 8 items 
    11130 
    11131 > setattr #6/z:160-168 res ss_type 2
    11132 
    11133 Assigning ss_type attribute to 9 items 
    11134 
    11135 > setattr #6/z:160-168 res ss_type 0
    11136 
    11137 Assigning ss_type attribute to 9 items 
    11138 
    11139 > setattr #6/z:161-168 res ss_type 2
    11140 
    11141 Assigning ss_type attribute to 8 items 
    11142 
    11143 > hide #!3 models
    11144 
    11145 > show #!3 models
    11146 
    11147 > hide #!3 models
    11148 
    11149 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    11150 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    11151 
    11152 > hide #!6 models
    11153 
    11154 > show #!16 models
    11155 
    11156 > view 2
    11157 
    11158 > save C:\Users\claud\Desktop\image14.png supersample 3
    11159 
    11160 > hide #!16 models
    11161 
    11162 > show #!6 models
    11163 
    11164 > view 7
    11165 
    11166 > show #!6 cartoons
    11167 
    11168 Drag select of 7 residues 
    11169 
    11170 > select down
    11171 
    11172 153 atoms, 7 residues, 3 models selected 
    11173 
    11174 > select up
    11175 
    11176 1772 atoms, 1978 bonds, 83 residues, 3 models selected 
    11177 
    11178 > hide sel cartoons
    11179 
    11180 > view 7
    11181 
    11182 > show #!3 models
    11183 
    11184 > hide #!3 models
    11185 
    11186 > save C:\Users\claud\Desktop\image14.png supersample 3
    11187 
    11188 > hide #!6 models
    11189 
    11190 > show #!3 models
    11191 
    11192 > save C:\Users\claud\Desktop\image15.png supersample 3
    11193 
    11194 > hide #!3 models
    11195 
    11196 > show #!17 models
    11197 
    11198 > show #!6 models
    11199 
    11200 > hide #!6 models
    11201 
    11202 > view name 9
    11203 
    11204 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    11205 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    11206 
    11207 ——— End of log from Thu Nov 12 16:47:41 2020 ———
    11208 
    11209 opened ChimeraX session 
    11210 
    11211 > hide #!17 models
    11212 
    11213 > show #!3 models
    11214 
    11215 > show #!4 models
    11216 
    11217 > view 6
    11218 
    11219 > view 6
    11220 
    11221 > view 6
    11222 
    11223 > view 6
    11224 
    11225 > view 5
    11226 
    11227 > view 4
    11228 
    11229 > ui tool show "Side View"
    11230 
    11231 > hide #!4 models
    11232 
    11233 > view 9
    11234 
    11235 > view 7
    11236 
    11237 > select #3/6:44
    11238 
    11239 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11240 
    11241 > select #3/6:45
    11242 
    11243 10 atoms, 10 bonds, 1 residue, 1 model selected 
    11244 
    11245 > select add #3/6:44
    11246 
    11247 19 atoms, 18 bonds, 2 residues, 2 models selected 
    11248 
    11249 > show sel atoms
    11250 
    11251 > color (#!3 & sel) byhetero
    11252 
    11253 > select clear
    11254 
    11255 > view 7
    11256 
    11257 > save C:\Users\claud\Desktop\image14.png supersample 3
    11258 
    11259 > show #!6 models
    11260 
    11261 > hide #!3 models
    11262 
    11263 > select clear
    11264 
    11265 > select #6/y:50
    11266 
    11267 10 atoms, 10 bonds, 1 residue, 1 model selected 
    11268 
    11269 > select add #6/y:49
    11270 
    11271 19 atoms, 18 bonds, 2 residues, 2 models selected 
    11272 
    11273 > show sel atoms
    11274 
    11275 > color (#!6 & sel) byhetero
    11276 
    11277 > select clear
    11278 
    11279 > view 7
    11280 
    11281 > save C:\Users\claud\Desktop\image15.png supersample 3
    11282 
    11283 > view 1
    11284 
    11285 > hide #!6 models
    11286 
    11287 > show #!15 models
    11288 
    11289 > surface gridSpacing 2
    11290 
    11291 > save "C:/Users/claud/Documents/Reviews/FrontiersReview-Translation
    11292 > regulation/Figures/CimeraSessions/ChmX_Figure3_ArfA-BrfA.cxs"
    11293 
    11294 ——— End of log from Fri Nov 13 01:13:06 2020 ———
     31[had to deleted embedded logs due to length]
    1129532
    1129633opened ChimeraX session