Changes between Version 28 and Version 29 of NIAID2024


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Timestamp:
Sep 26, 2024, 2:23:08 PM (15 months ago)
Author:
Elaine Meng
Comment:

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  • NIAID2024

    v28 v29  
    9999Kristen: is the GLTF center-each-node option in the daily build? Elaine and Eric: after consulting daily build usage and code notes, yes, and true by default.
    100100
    101 Phil reports a problem with alphafold fetch, works for us in the same versions of ChimeraX, Eric figured out it was his connection to UniProt since it also doesn't work for him to use "open" on a uniprot sequence. Phil will report a bug.  At first we were confused that clicking "Fetch" on the !AlphaFold tool runs the command "alphafold match" instead of "alphafold fetch" but it makes sense upon reviewing the documentation: "alphafold match" accepts more ways of specifying the query, not just uniprot name/ID, and will get top hit from fast k-mer sequence search if no exact match.
     101Phil reports a problem with alphafold fetch, works for us in the same versions of ChimeraX, Eric figured out it was his connection to UniProt since it also doesn't work for him to use "open" on a uniprot sequence. Phil will report a bug. Followup: this was caused by his VPN since it went away when he turned it off. Ticket #16027
     102
     103At first we were confused that clicking "Fetch" on the !AlphaFold tool runs the command "alphafold match" instead of "alphafold fetch" but it makes sense upon reviewing the documentation: "alphafold match" accepts more ways of specifying the query, not just uniprot name/ID, and will get top hit from fast k-mer sequence search if no exact match.
    102104
    103105Zach: Scooter will be gone when we're supposed to send the next report. To whom is that sent?  Darrell: nada@guidehouse.com