extractAtomsInSubst ( self,  substId )

extractAtomsInSubst(substId: int) -> list of Atom

ok ( self )

ok() -> bool

clearSAMap ( self )

clearSAMap()

isBlankLine ( self,  s )

isBlankLine(s: str) -> bool

readMol2file ( self,  filename )

readMol2file(filename: str) -> list of Molecule

splitLine ( self,  s )

splitLine(s: str) -> list of str

addAtomWithId (
        self,
        id,
        a,
        )

addAtomWithId(id: int, a: Atom)

atomWithId ( self,  id )

atomWithId(id: int) -> Atom

addAtomToSubst (
        self,
        substId,
        name,
        a,
        )

addAtomToSubst(substId: int, name: str, a: Atom)

error ( self )

error() -> str

readMol2stream (
        self,
        input,
        filename,
        lineNum,
        )

readMol2stream(input: readable file-like, filename: str, lineNum: int) -> list of Molecule

clearAtomIdMap ( self )

clearAtomIdMap()