RMSD_fillMatrix (
        M,
        Si,
        Sj,
        )

RMSD_fillMatrix(M: object, Si: object, Sj: object) -> object

clearPickSelectable ()

clearPickSelectable()

intersects ( p,  box )

intersects(p: Plane, box: BBox) -> bool intersects(p: Plane, s: Sphere) -> bool

eigenMatrix (
        q0,
        q1,
        q2,
        q3,
        )

eigenMatrix(q0: float, q1: float, q2: float, q3: float) -> object

initializeColors ( nogui )

initializeColors(nogui: bool)

bondsBetween (
        r0,
        r1,
        onlyOne,
        )

bondsBetween(r0: Residue, r1: Residue, onlyOne: bool = false) -> list of Bond

find_minimum_bounding_sphere ( pts )

find_minimum_bounding_sphere(pts: list of Point) -> bool, Sphere

find_bounding_sphere ( pts )

find_bounding_sphere(pts: list of Point) -> bool, Sphere

RMSD_matrix (
        l,
        m,
        n,
        s,
        )

RMSD_matrix(l: float, m: float, n: float, s: float) -> object

pathFinder ()

pathFinder() -> PathFinder

restmplFindResidue (
        name,
        start,
        end,
        )

restmplFindResidue(name: str, start: bool, end: bool) -> TmplResidue

pdbOrder ( resName )

pdbOrder(resName: str) -> list of str

opengl_platform ()

opengl_platform() -> str

sqdistance ( l,  r )

sqdistance(l: Point, r: Point) -> float

angle ( v0,  v1 )

angle(v0: Vector, v1: Vector) -> float angle(p0: Point, p1: Point, p2: Point) -> float

opengl_version ()

opengl_version() -> str

numpyArrayFromAtoms ( atoms,  crdSet )

numpyArrayFromAtoms(atoms: list of Atom, crdSet: (CoordSet|None) = None) -> object

tweak_graphics ( parameter,  value )

tweak_graphics(parameter: str, value: bool)

cross ( l,  r )

cross(l: Vector, r: Vector) -> Vector

memoryMap (
        start,
        len,
        type,
        )

memoryMap(start: PyCObject, len: int, type: int) -> object

atomsBonds2Residues ( atoms,  bonds )

atomsBonds2Residues(atoms: list of Atom, bonds: list of Bond) -> set of Residue

opengl_renderer ()

opengl_renderer() -> str

opengl_getFloat ( parameter )

opengl_getFloat(parameter: str) -> float

dihedral (
        p0,
        p1,
        p2,
        p3,
        )

dihedral(p0: Point, p1: Point, p2: Point, p3: Point) -> float

opengl_vendor ()

opengl_vendor() -> str

connectMolecule ( m )

connectMolecule(m: Molecule)

pixelFormat (
        interpHack,
        tk_window,
        stencil,
        stereo,
        multisample,
        alpha,
        accum,
        )

pixelFormat(interpHack: object, tk_window: str, stencil: bool = false, stereo: bool = false, multisample: bool = false, alpha: bool = false, accum: bool = false) -> int

sphere_pts ( radius,  density )

sphere_pts(radius: float, density: float) -> list of Vector

distance ( l,  r )

distance(l: Point, r: Point) -> float

operating_system ()

operating_system() -> str

setPickSelectable ( s )

setPickSelectable(s: Selectable)

xml_quote ( s )

xml_quote(s: str) -> str

OTFPathFinder ()

OTFPathFinder() -> PathFinder

Mol2io

Mol2io(h: PyMol2ioHelper) -> Mol2io

BondRot

BondRot(b: Bond) -> BondRot

RibbonStyle

Not instantiable from Python

RibbonStyleFixed

RibbonStyleFixed(sz: sequence of float) -> RibbonStyleFixed

PseudoBondGroup

Not instantiable from Python

PyMol2ioHelper

PyMol2ioHelper() -> PyMol2ioHelper

TrackChanges

Not instantiable from Python

Texture

Texture(name: str, format: int, type: int, width: int, height: int = 1, depth: int = 1) -> Texture

TextureColor

TextureColor(texture: Texture, s: float) -> TextureColor

Camera

Camera(windowWidth: float, fov: float, eyeSep: float, llx: int, lly: int, urx: int, ury: int) -> Camera

ChainTrace

Not instantiable from Python

BBox

BBox() -> BBox

OpenState

Not instantiable from Python

GeometryVector

GeometryVector() -> GeometryVector

OpenModels

Not instantiable from Python

ShaderVariable

Not instantiable from Python

TmplResidue

Not instantiable from Python

SharedState

SharedState(ext: object) -> SharedState

PathFinder

PathFinder(p: PathFinder) -> PathFinder

CoordSet

Not instantiable from Python

Vector

Vector() -> Vector

ShaderColor

ShaderColor(shader: (Shader|None) = None) -> ShaderColor

Sphere

Sphere() -> Sphere

SideViewer

SideViewer(followViewer: LensViewer) -> SideViewer

OGLFont

OGLFont(name: str, size: int, style: int = 0) -> OGLFont

Material

Material(name: str) -> Material

Molecule

Molecule() -> Molecule

Lens

Lens(t: int) -> Lens

Plane

Plane() -> Plane

Link

Link(mol: Molecule) -> Link

MSMSModel

MSMSModel(molecule: Molecule, category: str, probeRadius: float = 1.4f, allComponents: bool = true) -> MSMSModel

Atom

Not instantiable from Python

LensViewer

LensViewer() -> LensViewer

Selectable

Not instantiable from Python

RibbonStyleTapered

RibbonStyleTapered(sz: sequence of float) -> RibbonStyleTapered

SpotLight

SpotLight() -> SpotLight

PseudoBondMgr

PseudoBondMgr(cs: CoordSet) -> PseudoBondMgr

PseudoBond

Not instantiable from Python

Light

Not instantiable from Python

Residue

Not instantiable from Python

NoGuiViewer

NoGuiViewer() -> NoGuiViewer

Shader

Shader(name: str, dirname: str) -> Shader

SessionPDBio

SessionPDBio() -> SessionPDBio

Element

Element(name: str) -> Element

Viewer

Not instantiable from Python

RibbonXSection

RibbonXSection(sw: bool, sl: bool, closed: bool) -> RibbonXSection

ReadGaussianFCF

ReadGaussianFCF() -> ReadGaussianFCF

DirectionalLight

DirectionalLight() -> DirectionalLight

Model

Not instantiable from Python

Root

Not instantiable from Python

Ring

Ring(_x: Ring) -> Ring

Bond

Not instantiable from Python

ColorGroup

Not instantiable from Python

OSLAbbreviation

OSLAbbreviation(level: int, abbr: str) -> OSLAbbreviation

Point

Point() -> Point

Color

Not instantiable from Python

MaterialColor

MaterialColor(material: (Material|None) = None) -> MaterialColor

LODControl

Not instantiable from Python

TmplAtom

Not instantiable from Python

TmplBond

Not instantiable from Python

RibbonResidueClass

RibbonResidueClass(g: str, p: str, pn: bool, n: bool) -> RibbonResidueClass

RibbonStyleWorm

RibbonStyleWorm(sz: sequence of float) -> RibbonStyleWorm

PixelMap

PixelMap(name: str, format: int, type: int, length: int) -> PixelMap

PDBio

PDBio() -> PDBio

error

no attributes

PositionalLight

PositionalLight() -> PositionalLight

RibbonData

RibbonData() -> RibbonData

Xform

Xform() -> Xform

Spline

Spline(basisType: int, geometry: GeometryVector) -> Spline

MolResId

MolResId() -> MolResId