HappyDoc Generated Documentation Class: Residue

. / _chimera / Residue 

Not instantiable from Python

constants:
  • RS_ARROW = 3
  • RS_HELIX = 1
  • RS_NUCLEIC = 4
  • RS_SHEET = 2
  • RS_TURN = 0
  • Ribbon_2D = 0
  • Ribbon_Custom = 3
  • Ribbon_Edged = 1
  • Ribbon_Round = 2
  • selLevel = 2
attributes:
  • atoms: list of Atom
  • atomsMap: dict of (str, list of Atom))
  • id: MolResId
  • isHelix: bool
  • isHet: bool
  • isSheet: bool
  • isStrand: bool
  • isTurn: bool
  • kdHydrophobicity: object
  • label: str
  • labelColor: Color
  • labelOffset: Vector
  • molecule: Molecule
  • ribbonColor: Color
  • ribbonData: RibbonData
  • ribbonDisplay: bool
  • ribbonDrawMode: int
  • ribbonResidueClass: RibbonResidueClass
  • ribbonStyle: RibbonStyle
  • ribbonXSection: RibbonXSection
  • type: str
Methods   
  count 
count ( self )

count() -> int

  oslTestAbbr 
oslTestAbbr ( self,  a )

oslTestAbbr(a: OSLAbbreviation) -> bool

  oslParents 
oslParents ( self )

oslParents() -> list of Selectable

  findRangeAtoms 
findRangeAtoms ( self,  name )

findRangeAtoms(name: str) -> dict of (str, list of Atom))

  removeAtom 
removeAtom ( self,  element )

removeAtom(element: Atom)

  atomNames 
atomNames ( self )

atomNames() -> set of str

  hasRibbon 
hasRibbon ( self )

hasRibbon() -> bool

  ribbonFindStyleType 
ribbonFindStyleType ( self )

ribbonFindStyleType() -> int

  oslIdent 
oslIdent (
        self,
        start,
        end,
        )

oslIdent(start: int = SelDefault, end: int = SelDefault) -> str

  ribbonFindXSection 
ribbonFindXSection ( self,  mode )

ribbonFindXSection(mode: int) -> RibbonXSection

  ribbonBinormals 
ribbonBinormals ( self )

ribbonBinormals() -> GeometryVector

  addAtom 
addAtom ( self,  element )

addAtom(element: Atom)

  numAtoms 
numAtoms ( self )

numAtoms() -> int

  bondedTo 
bondedTo ( self,  r )

bondedTo(r: Residue) -> bool

  ribbonFindStyle 
ribbonFindStyle ( self )

ribbonFindStyle() -> RibbonStyle

  findAtom 
findAtom ( self,  name )

findAtom(name: str) -> Atom findAtom(name: str, altLoc: str) -> Atom

  getDefaultRibbonStyle 
getDefaultRibbonStyle ( self,  ss )

getDefaultRibbonStyle(ss: int) -> RibbonStyle

  oslLevel 
oslLevel ( self )

oslLevel() -> int

  oslChildren 
oslChildren ( self )

oslChildren() -> list of Selectable

  ribbonNormals 
ribbonNormals ( self )

ribbonNormals() -> GeometryVector

  ribbonCenters 
ribbonCenters ( self )

ribbonCenters() -> GeometryVector


This document was automatically generated Thu Nov 15 14:08:55 2007 by HappyDoc version 3.0.a1