[Chimera-users] Chromophore missing

[Elaine Meng]

Hi Marco,
Hmmm, it may be a bug that this residue does not appear in the Select... Residue menu. 

However, I can see by looking in the PDB file (or by opening this structure in ChimeraX) that the nonstandard residue name is CH6, so you can 

disp :CH6

for example, or do other things to it, e.g. color, select, ...

select :CH6

The residue does appear in the ChimeraX menu Select... Residue, so the bug seems to be specific to Chimera.

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Dec 16, 2022, at 8:49 AM, Marco Sette via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
> 
> Dear all,
> 
> When I fetch a protein with a chromophore (PDB code 2h5q), the chromophore, not a standard one, is missing, and not present in the Select-Residue menu. Is there any way to obtain it?
> 
> Thanks,
> 
> Marco