[Chimera-users] Chromophore missing

[Marco Sette]

Hi Elaine,

select :CH6 or disp :CH6 work in Chimera as well.

Thanks a lot,

Marco


Il 16/12/2022 18:18, Elaine Meng ha scritto:
> Hi Marco,
> Hmmm, it may be a bug that this residue does not appear in the Select... Residue menu.
>
> However, I can see by looking in the PDB file (or by opening this structure in ChimeraX) that the nonstandard residue name is CH6, so you can
>
> disp :CH6
>
> for example, or do other things to it, e.g. color, select, ...
>
> select :CH6
>
> The residue does appear in the ChimeraX menu Select... Residue, so the bug seems to be specific to Chimera.
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>> On Dec 16, 2022, at 8:49 AM, Marco Sette via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>>
>> Dear all,
>>
>> When I fetch a protein with a chromophore (PDB code 2h5q), the chromophore, not a standard one, is missing, and not present in the Select-Residue menu. Is there any way to obtain it?
>>
>> Thanks,
>>
>> Marco

-- 
Dr Marco Sette, PhD.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail: sette at uniroma2.it
Tel.: +39-0672594424


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