[chimerax-users] making color zone transparenct

[Tom Goddard]

The transparency command on volumes has been fixed in tonight's daily builds.  It was broken before Christmas by some changes to simplify the code that updates volume renderings.

	Tom


> On Jan 5, 2018, at 8:58 AM, Elaine Meng wrote:
> 
> Dear Yashar,
> I was going to say just use the transparency command, e.g.
> 
> transparency #2 50
> 
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/transparency.html>
> 
> …but I see that generates an error in the current daily build.  I’ll make a ticket to report the bug.
> 
> I also tried
> 
> volume #2 transparency .5
> 
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#general>
> 
> …but that did not work after coloring by zone, nor did trying to change the color with a command (ex: volume #2 color pink) or the color well on the Volume Viewer dialog. Another ticket, presumably related to the first.
> 
> Sorry for the problems, and thanks for bringing our attention to them.
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
>> On Jan 5, 2018, at 7:30 AM, Yashar Sadian wrote:
>> 
>> Dear all
>> Is there a command or a way to make a zone colored EM map transparent?
>> -- 
>> Best,
>> Yashar Sadian
>> 
> 
> 
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