[chimerax-users] Ignored bad PDB record found

[Elaine Meng]

Dear Mauricio,
It’s hard to tell without having the file, or at least part of it that gives these messages.  Could send as attachment to the list, or if private, just to me.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jan 25, 2018, at 8:55 AM, Maurício Menegatti Rigo <mauriciomr1985 at gmail.com> wrote:
> 
> I don't understand, my .pdb file seems perfectly fine, but I keep getting this error:
> 
> Ignored bad PDB record found on line 1
> ATOM 1 N ASN A 1 61.433 13.168 52.787 1.00 69.56 N 
> 
> Ignored bad PDB record found on line 2
> ATOM 2 CA ASN A 1 62.543 13.695 51.962 1.00 69.56 C 
> 
> Ignored bad PDB record found on line 3
> ATOM 3 C ASN A 1 61.990 14.337 50.735 1.00 69.56 C 
> 
> Ignored bad PDB record found on line 4
> ATOM 4 O ASN A 1 60.999 13.878 50.167 1.00 69.56 O 
> 
> Ignored bad PDB record found on line 5
> ATOM 5 CB ASN A 1 63.479 12.547 51.555 1.00 69.56 C
> 
> 2610 messages similar to the above omitted
> 
> I can open it in Chimera, PyMol, VMD, among others. But in ChimeraX is always the same error. I'm working on Linux (Ubuntu 14.04) with ChimeraX version 0.5 (2018-01-24).
> 
> Any help?
> 
> Thanks in advance,
> Mauricio M Rigo, Ph.D