[chimerax-users] Show map only around certain selection

[Karim Rafie]

Hi Elaine,

grand, thanks for the quick response.

Much appreciated.

Best,
Karim

Get Outlook for Android<https://aka.ms/ghei36>

________________________________
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Thursday, April 2, 2020 7:12:14 PM
To: Karim Rafie <karim.rafie at umu.se>
Cc: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
Subject: Re: [chimerax-users] Show map only around certain selection

Hi Karim,
You can use the command "volume zone" with "newMap false":
<http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#zone>

For example, if your map is #2 and your atomic model is #1 with chain of interest B, could be something like:

volume zone #2 near #1/B range 5 newMap false

(or "near sel" to use currently selected atoms instead of "near #1/B" to specify the chain directly).  Then to go back to the full map display, command:

volume unzone #2

<http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#unzone>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Apr 2, 2020, at 9:36 AM, Karim Rafie <karim.rafie at umu.se> wrote:
>
> Dear all,
> I was wondering how to show part of a map only surrounding certain residues, i.e. I have coordinates for a multiple-chain PDB but I only want to show the electron density surrounding one chain.
> Any help would be greatly appreciated.
> Best,
> Karim

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimerax-users/attachments/20200402/2ccd43b1/attachment-0001.html>