[chimerax-users] ViewDockX for Autodock Vina error
Greg Couch
gregc at cgl.ucsf.edu
Sun Dec 12 14:25:04 PST 2021
Use the Help / Report a Bug dialog and include your pdbqt file (or a
smaller one the replicates the bug), and we'll be able to figure out
what's going on. It could be a change in the pdbqt format, or a bug in
our code. And with the example pdbqt file, we will be able to verify
that any change to fix it, actually works.
-- Greg
On 12/12/2021 8:12 AM, Visvaldas K. via ChimeraX-users wrote:
> Dear colleagues,
>
> for some reason ChimeraX does not recognize pdbqt from Autodock Vina
> 1.1.2 as a "docking file", even though it opens pdbqt file just fine
> (The message: No suitable models found for ViewDockX). The
> documentation says that Autodock Vina is supported.
>
> Perhaps it's the version of Vina (I use 1.1.2, or preferably its fork
> Smina, while the newest version is 1.2)?
>
> If I knew what the file that ChimeraX recognizes as a "model" looks
> like, I'd write a script to reformat my pdbqt, but at the moment I'm
> in the dark... Not too bad since I still can view the structures, but
> perhaps I'm missing some cool features...
>
> Thank you in advance,
>
> Vis
>
>
>
>
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