[chimerax-users] ViewDockX for Autodock Vina error
Eric Pettersen
pett at cgl.ucsf.edu
Mon Dec 13 15:31:31 PST 2021
Are there REMARK records in the file with the string "VINA RESULT:" in them? Are those REMARK records between MODEL/ENDMDL records?
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
> On Dec 12, 2021, at 8:12 AM, Visvaldas K. via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
>
> Dear colleagues,
>
> for some reason ChimeraX does not recognize pdbqt from Autodock Vina 1.1.2 as a "docking file", even though it opens pdbqt file just fine (The message: No suitable models found for ViewDockX). The documentation says that Autodock Vina is supported.
>
> Perhaps it's the version of Vina (I use 1.1.2, or preferably its fork Smina, while the newest version is 1.2)?
>
> If I knew what the file that ChimeraX recognizes as a "model" looks like, I'd write a script to reformat my pdbqt, but at the moment I'm in the dark... Not too bad since I still can view the structures, but perhaps I'm missing some cool features...
>
> Thank you in advance,
>
> Vis
>
>
>
> _______________________________________________
> ChimeraX-users mailing list
> ChimeraX-users at cgl.ucsf.edu
> Manage subscription:
> https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimerax-users/attachments/20211213/1ab6a421/attachment.html>
More information about the ChimeraX-users
mailing list