[chimerax-users] using pandas

Eric Pettersen pett at cgl.ucsf.edu
Wed Jun 9 10:11:43 PDT 2021


Hi Ilse,
	You can install pandas into ChimeraX's Python using 'pip install' as described in this mailing-list message: https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2020-June/001216.html <https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2020-June/001216.html> .  The caveat is that though this will work on all platforms, the actual later "Import pandas" will fail on at least some Linux platforms because some of our Linux installers don't include the bz2 module in their Python, which pandas depends on.  I will add you to the cc list for the ticket we have open for this problem, in case it matters to you.

--Eric

	Eric Pettersen
	UCSF Computer Graphics Lab


> On Jun 9, 2021, at 3:09 AM, Lagerwaard, I.M. (Ilse) via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Hello everyone,
>  
> Is it possible to use the pandas package in ChimeraX? I tried opening a Python script containing the line ‘import pandas’, but I get the error: ‘ModuleNotFoundError: No module named 'pandas'’.
>  
> Kind regards,
> Ilse
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