[chimerax-users] using pandas

[Lagerwaard, I.M. (Ilse)]

Hi Eric,

Thank you for the reply! Unfortunately, even though I followed your instructions and do have the bz2 module (I use Windows), I still get the same error. I can ‘import pandas’ in ChimeraX’s Python, but not from within the application itself. Do you have any idea what else might be going on?

Ilse

Van: Eric Pettersen <pett at cgl.ucsf.edu>
Verzonden: 09 June 2021 19:12
Aan: Lagerwaard, I.M. (Ilse) <i.m.lagerwaard at students.uu.nl>
CC: chimerax-users at cgl.ucsf.edu
Onderwerp: Re: [chimerax-users] using pandas

Hi Ilse,
                You can install pandas into ChimeraX's Python using 'pip install' as described in this mailing-list message: https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2020-June/001216.html .  The caveat is that though this will work on all platforms, the actual later "Import pandas" will fail on at least some Linux platforms because some of our Linux installers don't include the bz2 module in their Python, which pandas depends on.  I will add you to the cc list for the ticket we have open for this problem, in case it matters to you.

--Eric

                Eric Pettersen
                UCSF Computer Graphics Lab



On Jun 9, 2021, at 3:09 AM, Lagerwaard, I.M. (Ilse) via ChimeraX-users <chimerax-users at cgl.ucsf.edu<mailto:chimerax-users at cgl.ucsf.edu>> wrote:

Hello everyone,

Is it possible to use the pandas package in ChimeraX? I tried opening a Python script containing the line ‘import pandas’, but I get the error: ‘ModuleNotFoundError: No module named 'pandas'’.

Kind regards,
Ilse
_______________________________________________
ChimeraX-users mailing list
ChimeraX-users at cgl.ucsf.edu<mailto:ChimeraX-users at cgl.ucsf.edu>
Manage subscription:
https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimerax-users/attachments/20210610/d50a374f/attachment.html>