[chimerax-users] Imod map values

[Tom Goddard]

Hi Hong,

I guess you mean you want to change the sign of the density map values.  The following ChimeraX command does that

	volume scale #1 factor -1

And if you wanted to save that map you could use

	save mynewmap.mrc model #1

  Tom


> On Aug 25, 2022, at 12:59 PM, HONG ZHAN via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear all, 
> 
> It might be not a good question regarding chimeraX. I have a PEET generated averaged map and output of PEET is reversed vs. single particle maps. What is a good function to change the density of PEET output? I used newstack -multadd -1,0 function in imod, however it gave -137 level… 
> 
> Thanks!
> Hong
> 
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