[chimerax-users] How to view SwissDock output in ViewDockX

[Elaine Meng]

Sorry, as mentioned in this previous post, ChimeraX does not yet support reading SwissDock output into ViewDockX:

<https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2021-February/001909.html>

There is a ticket about this in the ChimeraX bug/request database, and I'll add you to the list of people to notify if there are updates on this issue:
<https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/4232>

Would it be OK to add your sample data to this ticket (the database is publicly available)?

For now, you would need to keep using Chimera ViewDock for SwissDock results.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Feb 26, 2022, at 4:20 PM, Eden Fussner - Dupas via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Hi Elaine,
> 
> I’m not sure if you’ve answered this elsewhere - but I am having the same issue another user was having. The output of Swissdock isn’t being recognized by the ViewDockX tool.
> 
> I am trying to pick the best model stearic acid in this PLAT protein (an AlphaFold model). Any help would be most appreciated.
> 
> Warmly,
> Eden
> 
> <target.pdb><clusters.dock4.pdb>