[chimerax-users] How to view SwissDock output in ViewDockX

[Eden Fussner - Dupas]

Oh thank you so much Elaine - so if I just switch to the original Chimera it will work… thank you!

Yes, please go ahead. If it’s helpful for others using SwissDock and Chimera - fine with me.

Cheers,
Eden



> On Feb 27, 2022, at 11:41 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> 
> Sorry, as mentioned in this previous post, ChimeraX does not yet support reading SwissDock output into ViewDockX:
> 
> <https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2021-February/001909.html>
> 
> There is a ticket about this in the ChimeraX bug/request database, and I'll add you to the list of people to notify if there are updates on this issue:
> <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/4232>
> 
> Would it be OK to add your sample data to this ticket (the database is publicly available)?
> 
> For now, you would need to keep using Chimera ViewDock for SwissDock results.
> Best,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
>> On Feb 26, 2022, at 4:20 PM, Eden Fussner - Dupas via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
>> 
>> Hi Elaine,
>> 
>> I’m not sure if you’ve answered this elsewhere - but I am having the same issue another user was having. The output of Swissdock isn’t being recognized by the ViewDockX tool.
>> 
>> I am trying to pick the best model stearic acid in this PLAT protein (an AlphaFold model). Any help would be most appreciated.
>> 
>> Warmly,
>> Eden
>> 
>> <target.pdb><clusters.dock4.pdb>