[chimerax-users] error saving session in v 1.5

[Yoda Muppet]

Greetings.

We're having an issue savings session with ChimeraX 1.5.  Trying to save a session file results in the following error:

[save] (help: user/commands/save.html) /data/processed/staggers/cryofib-
tryps/process/YTAT9-1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs
[save /data/processed/staggers/cryofib-
tryps/process/YTAT9 - 1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs] (cxcmd: save
/data/processed/staggers/cryofib-
tryps/process/YTAT9 - 1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs)
Traceback (most recent call last) :
File
"/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm. take snapshot (obj
session,
self.-state flags)
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/log/tool.py", line 542, in take snapshot
"contents': self.page source,
AttributeError:
*Log' object has no attribute
'page source'
The above exception was the direct cause of the following exception:
Traceback (most recent call last) :
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process (obj, parents)
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py",
line 290, in process
raise RuntimeError (msg) from e
RuntimeError: Error while saving session data for
"tools'
->
‹chimerax.core. tools. Tools object at 0x7f90efeb0310>
=>
<chimerax.log. tool. Log
object at 0x7f90ee2b3c10>
During handling of the above exception, another exception occurred:
Traceback (most recent call last) :
File
"/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session. save (output, version=version, include maps=include maps)
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py"
line 625, in save
mgr.discovery(self. state containers)
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError ("error processing: %S: %S" % ( obj stack(parents, obj),
e))
ValueError: error processing:
"tools'
<chimerax.core. tools. Tools object at
0x7 f90efeb0310>
<chimerax.log. tool.Log object at 0x7f90ee2b3c10>: Error
while saving session data for 'tools'
-> <chimerax.core. tools. Tools object at
0x7f90efeb0310>
<chimerax.log. tool. Log object at 0x7f90ee2b3c10>
BUG: ValueError: error processing:
'tools'
for
"tools
=>
->
->: Error while saving session data
File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
packages/chimerax/core/session.py"
line 266, in discovery
raise ValueError ("error processing: %S: %5" %
(obj stack(parents, obj), e))
See log for complete Python traceback.
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