[chimerax-users] error saving session in v 1.5

[Elaine Meng]

Greetings,
When you get a traceback that you think is a bug, instead of sending e-mail it is better to use the "Report Bug" button on the error dialog, or if you don't see that, menu: Help... Report a Bug.  

This traceback might be enough for the team to figure out the problem, but sometimes it is not.

The bug-reporting mechanism include a little more information, and there are places in the form to include your email address (if you want feedback) and to attach a file (if some specific data is needed to reproduce the problem.  You can also write a description of what you did, in case certain steps are needed to reproduce the problem.

Thanks for letting us know! 
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Nov 4, 2022, at 8:13 AM, Yoda Muppet via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Greetings.
> 
> We're having an issue savings session with ChimeraX 1.5.  Trying to save a session file results in the following error:
> 
> [save] (help: user/commands/save.html) /data/processed/staggers/cryofib-
> tryps/process/YTAT9-1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs
> [save /data/processed/staggers/cryofib-
> tryps/process/YTAT9 - 1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs] (cxcmd: save
> /data/processed/staggers/cryofib-
> tryps/process/YTAT9 - 1 lamella4 0206 def -5 110e tilt-7/full seg session.cxs)
> Traceback (most recent call last) :
> File
> "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py", line 285, in process
> data = sm. take snapshot (obj
> session,
> self.-state flags)
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/log/tool.py", line 542, in take snapshot
> "contents': self.page source,
> AttributeError:
> *Log' object has no attribute
> 'page source'
> The above exception was the direct cause of the following exception:
> Traceback (most recent call last) :
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py", line 262, in discovery
> self.processed[key] = self.process (obj, parents)
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py",
> line 290, in process
> raise RuntimeError (msg) from e
> RuntimeError: Error while saving session data for
> "tools'
> ->
> ‹chimerax.core. tools. Tools object at 0x7f90efeb0310>
> =>
> <chimerax.log. tool. Log
> object at 0x7f90ee2b3c10>
> During handling of the above exception, another exception occurred:
> Traceback (most recent call last) :
> File
> "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py", line 896, in save
> session. save (output, version=version, include maps=include maps)
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py"
> line 625, in save
> mgr.discovery(self. state containers)
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py", line 266, in discovery
> raise ValueError ("error processing: %S: %S" % ( obj stack(parents, obj),
> e))
> ValueError: error processing:
> "tools'
> <chimerax.core. tools. Tools object at
> 0x7 f90efeb0310>
> <chimerax.log. tool.Log object at 0x7f90ee2b3c10>: Error
> while saving session data for 'tools'
> -> <chimerax.core. tools. Tools object at
> 0x7f90efeb0310>
> <chimerax.log. tool. Log object at 0x7f90ee2b3c10>
> BUG: ValueError: error processing:
> 'tools'
> for
> "tools
> =>
> ->
> ->: Error while saving session data
> File "/opt/cryoem/chimerax-2022.10.28/lib/python3.9/site-
> packages/chimerax/core/session.py"
> line 266, in discovery
> raise ValueError ("error processing: %S: %5" %
> (obj stack(parents, obj), e))
> See log for complete Python traceback.
> _______________________________________________
> ChimeraX-users mailing list
> ChimeraX-users at cgl.ucsf.edu
> Manage subscription:
> https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users