[chimerax-users] How do you submit a sequence text file to BLAST/Modeller in ChimeraX?

Ralph Loring rhloring at gmail.com
Wed Nov 23 05:07:44 PST 2022


Hi,
When I was using Chimera and wanted to use Modeller, I would go to
sequence/Blast, paste in my sequence text file, Blast and then pick
homologous structures and then connect to Modeller.  Both Blast and
Modeller appear to be present in ChimeraX, but I can't see how to enter my
text file.  Is everything supposed to go to AlphaFold now?  Are there any
tutorials on how to use Modeller in ChimeraX?  Thanks!
P.S. Hope you have a Happy Thanksgiving!  I'm not planning on doing
anything with this until after the holidays, so don't rush in answering.
Ralph Lorini

Ralph H. Loring
Associate Professor of Pharmacology
Department of Pharmaceutical Sciences
166 TF
Northeastern University
360 Huntington Avenue
Boston, MA 02115 USA
617-373-3216 office
617-373-8886 fax
r.loring at northeastern.edu
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